[Insight-users] statistical volume measurement of segmented ventricles

[John Drozd]

Thanks Andriy. I will be developing my ITK code to work as a module within
3D Slicer.

Thanks,
john

On Fri, Nov 13, 2009 at 12:17 PM, Andriy Fedorov <fedorov at bwh.harvard.edu>wrote:

> > I had previously been using the ITK that came with the 3DSlicer download,
> 3D
> > Slicer Version 3.4 RC1 1.0 (3D Slicer Version 3.4 RC11.0), which did not
> > have these classes in its Slicer3-lib/Insight/Code/Review directory.
> >
> > Now, I have the impetus to use the latest 3.16.0 version of ITK.
> >
>
> Hi John,
>
> 3D Slicer 3.4 is using ITK 3.14, that's why you didn't see the
> classes. If you check out the current trunk source code for Slicer (or
> get a recent nightly build) it is using the latest ITK 3.16. The
> instructions on building Slicer from source are available here
>
>
> http://www.slicer.org/slicerWiki/index.php/Slicer3:Build_Instructions#Building_the_latest_development_version
>
> Just FYI in case you would like to develop your tools within 3D Slicer.
>
> Andriy Fedorov
>
> > Thanks to both of you again,
> > john
> >
> > On Fri, Nov 13, 2009 at 11:20 AM, Bill Lorensen <bill.lorensen at gmail.com
> >wrote:
> >
> >> John,
> >>
> >> The classes in Gaetan's paper now reside in the Insight/Code/Review.
> >>
> >> Bill
> >>
> >> On Fri, Nov 13, 2009 at 4:29 AM, John Drozd <john.drozd at gmail.com>
> wrote:
> >> > Thank you very much.  This is very helpful.
> >> >
> >> > john
> >> >
> >> > On Thu, Nov 12, 2009 at 3:42 PM, C.Cagatay Bilgin <bilgic at cs.rpi.edu>
> >> wrote:
> >> >>
> >> >> I use the following submission by Gaetan for
> >> >> that purpose. Note that It has way more
> >> >> morphological features than you asked for.
> >> >>
> >> >> http://www.insight-journal.org/browse/publication/176
> >> >>
> >> >> Regards,
> >> >>
> >> >>
> >>
> ----------------------------------------------------------------------------
> >> >> Cemal Cagatay Bilgin,
> >> >> Ph.D Candidate in Computer Science Department at RPI
> >> >> bilgic at cs.rpi.edu - http://www.cs.rpi.edu/~bilgic<http://www.cs.rpi.edu/%7Ebilgic>
> <http://www.cs.rpi.edu/%7Ebilgic>
> >> >> Lally 01A, 110 8th Street Troy, NY 12180-3590, USA.
> >> >> Tel: (518) 276-8489, Fax:(518) 276-4033
> >> >>
> >> >> On Nov 12, 2009, at 12:31 PM, John Drozd wrote:
> >> >>
> >> >>> Hello,
> >> >>>
> >> >>> Using Examples/Segmentation/ConnectedThresholdImageFilter.cxx,
> >> >>> I successfully segmented ventricles from an mri image of a human
> brain.
> >> >>>
> >> >>> Using ITK, I would like to calculate the statistical volume in mm^3
> of
> >> >>> these segmented ventricles.
> >> >>> Are there any ITK functions that will allow me to calculate the
> volume
> >> of
> >> >>> a segmented region?
> >> >>>
> >> >>> Thanks,
> >> >>> John
> >> >>> _____________________________________
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> >> >
> >> >
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