[Insight-users] statistical volume measurement of segmented ventricles

[Andriy Fedorov]

On Fri, Nov 13, 2009 at 15:49, John Drozd <john.drozd at gmail.com> wrote:
> Thanks Andriy. I will be developing my ITK code to work as a module within
> 3D Slicer.
>

John,

This is great!

One thing you might want to consider is that 3D Slicer already has the
capability to provide you statistics like mm^3 volume for a label. See
the documentation here:

http://wiki.slicer.org/slicerWiki/index.php/Modules:LabelStatistics-Documentation-3.4

I just don't want you to spend time re-implementing existing
functionality.... Please post to slicer mail list if you need any help
regarding 3D Slicer module development.

Andriy Fedorov




> Thanks,
> john
>
> On Fri, Nov 13, 2009 at 12:17 PM, Andriy Fedorov <fedorov at bwh.harvard.edu>
> wrote:
>>
>> > I had previously been using the ITK that came with the 3DSlicer
>> > download, 3D
>> > Slicer Version 3.4 RC1 1.0 (3D Slicer Version 3.4 RC11.0), which did not
>> > have these classes in its Slicer3-lib/Insight/Code/Review directory.
>> >
>> > Now, I have the impetus to use the latest 3.16.0 version of ITK.
>> >
>>
>> Hi John,
>>
>> 3D Slicer 3.4 is using ITK 3.14, that's why you didn't see the
>> classes. If you check out the current trunk source code for Slicer (or
>> get a recent nightly build) it is using the latest ITK 3.16. The
>> instructions on building Slicer from source are available here
>>
>>
>> http://www.slicer.org/slicerWiki/index.php/Slicer3:Build_Instructions#Building_the_latest_development_version
>>
>> Just FYI in case you would like to develop your tools within 3D Slicer.
>>
>> Andriy Fedorov
>>
>> > Thanks to both of you again,
>> > john
>> >
>> > On Fri, Nov 13, 2009 at 11:20 AM, Bill Lorensen
>> > <bill.lorensen at gmail.com>wrote:
>> >
>> >> John,
>> >>
>> >> The classes in Gaetan's paper now reside in the Insight/Code/Review.
>> >>
>> >> Bill
>> >>
>> >> On Fri, Nov 13, 2009 at 4:29 AM, John Drozd <john.drozd at gmail.com>
>> >> wrote:
>> >> > Thank you very much.  This is very helpful.
>> >> >
>> >> > john
>> >> >
>> >> > On Thu, Nov 12, 2009 at 3:42 PM, C.Cagatay Bilgin <bilgic at cs.rpi.edu>
>> >> wrote:
>> >> >>
>> >> >> I use the following submission by Gaetan for
>> >> >> that purpose. Note that It has way more
>> >> >> morphological features than you asked for.
>> >> >>
>> >> >> http://www.insight-journal.org/browse/publication/176
>> >> >>
>> >> >> Regards,
>> >> >>
>> >> >>
>> >>
>> >> ----------------------------------------------------------------------------
>> >> >> Cemal Cagatay Bilgin,
>> >> >> Ph.D Candidate in Computer Science Department at RPI
>> >> >> bilgic at cs.rpi.edu -
>> >> >> http://www.cs.rpi.edu/~bilgic<http://www.cs.rpi.edu/%7Ebilgic>
>> >> >> Lally 01A, 110 8th Street Troy, NY 12180-3590, USA.
>> >> >> Tel: (518) 276-8489, Fax:(518) 276-4033
>> >> >>
>> >> >> On Nov 12, 2009, at 12:31 PM, John Drozd wrote:
>> >> >>
>> >> >>> Hello,
>> >> >>>
>> >> >>> Using Examples/Segmentation/ConnectedThresholdImageFilter.cxx,
>> >> >>> I successfully segmented ventricles from an mri image of a human
>> >> >>> brain.
>> >> >>>
>> >> >>> Using ITK, I would like to calculate the statistical volume in mm^3
>> >> >>> of
>> >> >>> these segmented ventricles.
>> >> >>> Are there any ITK functions that will allow me to calculate the
>> >> >>> volume
>> >> of
>> >> >>> a segmented region?
>> >> >>>
>> >> >>> Thanks,
>> >> >>> John
>> >> >>> _____________________________________
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>> >> >
>> >> >
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