[Insight-users] Convert to 3D: DeformableRegistration17 & 16

[Ganesh Narayanasamy]

Thank you Luis, as always we can expect a reply from you with solutions.

Trying to decipher your message, here is what I did but the outcome was not pleasant. After making these changes, I built the solution and ran the exe file to see both the programs crash. 
**
Changed lines 130 to 133 in DeformableRegistration17.cxx

  typedef itk::Image< PixelType, 3 > ImageType;
  typedef itk::Image< InternalPixelType, 3 > InternalImageType;
    typedef itk::Vector< float, 3 > VectorPixelType; 
  typedef itk::Image< VectorPixelType, 3 > DeformationFieldType; 

and line 206 into
  const unsigned int Dimension = 3; 
**

Can you help me understand your message below.

Thank you,
Ganesh
 
************************************************************************

"What the mind of man can conceive and believe, It can achieve" - Napolean Hill

-Ganesh 
Narayanasamy,Ph.D., PostDoc-University of Kentucky Cancer Center

Earlier work: 
http://www.sciencedaily.com/releases/2007/05/070504133017.htm

************************************************************************



> Date: Sun, 2 May 2010 18:14:09 -0400
> Subject: Re: [Insight-users] Convert to 3D: DeformableRegistration17 & 16
> From: luis.ibanez at kitware.com
> To: nganesh76 at hotmail.com
> CC: insight-users at itk.org
> 
> Hi Ganesh,
> 
> Here is the patch that you need to apply to
> 
>     DeformableRegistration16.cxx
>     DeformableRegistration17.cxx
> 
> in order to use them in 3D images:
> 
> ------------------------------------------------------------------
> Index: DeformableRegistration16.cxx
> ===================================================================
> RCS file: /cvsroot/Insight/Insight/Examples/Registration/DeformableRegistration16.cxx,v
> retrieving revision 1.3
> diff -p -u -r1.3 DeformableRegistration16.cxx
> --- DeformableRegistration16.cxx	21 Nov 2009 21:23:25 -0000	1.3
> +++ DeformableRegistration16.cxx	2 May 2010 22:03:24 -0000
> @@ -125,10 +125,10 @@ protected:
>    // define ITK short-hand types
>    typedef short PixelType;
>    typedef float InternalPixelType;
> -  typedef itk::Image< PixelType, 2 > ImageType;
> -  typedef itk::Image< InternalPixelType, 2 > InternalImageType;
> -  typedef itk::Vector< float, 2 > VectorPixelType;
> -  typedef itk::Image< VectorPixelType, 2 > DeformationFieldType;
> +  typedef itk::Image< PixelType, 3 > ImageType;
> +  typedef itk::Image< InternalPixelType, 3 > InternalImageType;
> +  typedef itk::Vector< float, 3 > VectorPixelType;
> +  typedef itk::Image< VectorPixelType, 3 > DeformationFieldType;
>    typedef itk::DemonsRegistrationFilter< InternalImageType,
>      InternalImageType, DeformationFieldType> RegistrationFilterType;
> 
> @@ -201,7 +201,7 @@ int main( int argc, char * argv [] )
>      }
> 
>    // define ITK short-hand types
> -  const unsigned int Dimension = 2;
> +  const unsigned int Dimension = 3;
>    typedef short PixelType;
>    typedef float InternalPixelType;
>    typedef itk::Image< PixelType, Dimension > ImageType;
> Index: DeformableRegistration17.cxx
> ===================================================================
> RCS file: /cvsroot/Insight/Insight/Examples/Registration/DeformableRegistration17.cxx,v
> retrieving revision 1.3
> diff -p -u -r1.3 DeformableRegistration17.cxx
> --- DeformableRegistration17.cxx	21 Nov 2009 21:23:25 -0000	1.3
> +++ DeformableRegistration17.cxx	2 May 2010 22:03:25 -0000
> @@ -203,7 +203,7 @@ int main( int argc, char * argv [] )
>      }
> 
>    // define ITK short-hand types
> -  const unsigned int Dimension = 2;
> +  const unsigned int Dimension = 3;
>    typedef short PixelType;
>    typedef float InternalPixelType;
>    typedef itk::Image< PixelType, Dimension > ImageType;
> 
> -----------------------------------------------
> 
> Regarding the examples:
> 
>        *  DeformableRegistration9
>        *  DeformableRegistration10
> 
> Please look at the CMakeLists.txt file in
> 
>    Insight/Examples/Registration/
> 
> to line 90-98 you will find:
> 
> IF( USE_FFTWD )
>   ADD_EXECUTABLE(DeformableRegistration9 DeformableRegistration9.cxx )
>   TARGET_LINK_LIBRARIES(DeformableRegistration9
>       ITKIO ITKAlgorithms ITKNumerics)
> 
>   ADD_EXECUTABLE(DeformableRegistration10 DeformableRegistration10.cxx )
>   TARGET_LINK_LIBRARIES(DeformableRegistration10
>                         ITKIO ITKAlgorithms ITKNumerics)
> ENDIF( USE_FFTWD )
> 
> 
> 
> That is, these two examples are only build if you are
> using the FFTW Library.
> 
> You will have to download and build FFTW, and then
> reconfigure ITK with CMake, to turn ON the option
> 
>                   USE_FFTWD
> 
> 
>      Regards,
> 
> 
>           Luis
> 
> 
> -------------------------------------
> On Thu, Apr 29, 2010 at 11:00 AM, Ganesh Narayanasamy
> <nganesh76 at hotmail.com> wrote:
> >
> >
> > I would like to convert DeformableRegistration 17 & 16 from 2D into 3D. Can
> > some one send me the changes along with the location. The ones that I can
> > spot are:
> >
> > In DeformableRegistration17.cxx,
> > Change Line 206 from "const unsigned int Dimension = 2;"  into 3
> >
> > In DeformableRegistration16.cxx,
> > Change Line 204 from "const unsigned int Dimension = 2;"  into 3
> >
> > ***
> > In a related query, I can find DeformableRegistration9 & 10.cxx inside
> > C:\ITK316\ITK\Examples\Registration\, however all of the
> > DeformableRegistration9 & 10.VC++ project related files are missing from the
> > C:\ITK316\Build\Examples\Registration\. Can you help me create these ?
> >
> >
> > Thanks,
> > Ganesh
> >

 		 	   		  
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