[Insight-users] SimpleITK testing in Python

[David Welch]

Matt, 

Works like a charm.  I have all but three tests passing now: Python.OtsuThreshold, Registration.Simple and Python.Test.Numpy.  

I believe the last is caused b/c the submodule SimpleITK.numpy points to my out-of-date OSX Python framework version as opposed to my /Library/Python/site-packages version.  Is there a CMake flag to control that or is this intended?  
 
-Dave 

----
David Welch
david.m.welch at gmail.com

Something you entered
transcended parameters.
So much is unknown.

-Salon Magazine, Error Haiku Challenge


On 30Nov, 2011, at 5:22 PM, Matt McCormick wrote:

> Hi Dave,
> 
> Please try
> 
>  git submodule update --init
> 
> at the top of the source tree.
> 
> Thanks,
> Matt
> 
> On Wed, Nov 30, 2011 at 6:10 PM, David Welch <david.m.welch at gmail.com> wrote:
>> Thanks, Bill.  The tests run, but almost all fail.  Using the -VV flag, I see the first ~10 are looking for the Input/ directory from the SimpleITKData repository.  How do I point CTest (or SITK) to this directory?
>> 
>> -Dave
>> 
>> --
>> David Welch
>> david.m.welch at gmail.com
>> 
>> 
>> 
>> On 30Nov, 2011, at 1:53 PM, Bill Lorensen wrote:
>> 
>>> Try typing ctest at the top[ of your build tree.
>>> 
>>> 
>>> On Wed, Nov 30, 2011 at 2:41 PM, David Welch <david.m.welch at gmail.com> wrote:
>>>> Hello all,
>>>> I've installed SimpleITK with Python wrapping and testing ON, but now that
>>>> I've finished my build, I cannot see how to test it.  After building with
>>>> CMake, I did the following:
>>>> *******************************************
>>>> $ cd Wrapping/
>>>> $ python PythonPackage/setup.py install
>>>> $ python
>>>>>>> import SimpleITK as sitk
>>>>>>> sitk.test("1")
>>>> Traceback (most recent call last):
>>>>   File "<stdin>", line 1, in <module>
>>>> AttributeError: 'module' object has no attribute 'test'
>>>> *******************************************
>>>> Looking at the SimpleITK Jira site, there is a Python virtualenv to test the
>>>> python install ( https://issues.itk.org/jira/browse/SIMPLEITK-163 ) but it
>>>> doesn't seem to address testing SimpleITK itself.
>>>> In the build folder, there is a Testing/Unit/PythonTests folder with many
>>>> test files, but running them from the command line gives an error "Usage:
>>>> FooBar tag <input(s)> output".  I can't find any documentation to help me,
>>>> either.
>>>> Cheers,
>>>> Dave
>>>> ----
>>>> David Welch
>>>> david.m.welch at gmail.com
>>>> 
>>>> Something you entered
>>>> transcended parameters.
>>>> So much is unknown.
>>>> -Salon Magazine, Error Haiku Challenge
>>>> 
>>>> 
>>>> 
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>>> 
>>> 
>>> 
>>> --
>>> Unpaid intern in BillsBasement at noware dot com
>> 
>> _____________________________________
>> Powered by www.kitware.com
>> 
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>> 
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.html
>> 
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>> 
>> Follow this link to subscribe/unsubscribe:
>> http://www.itk.org/mailman/listinfo/insight-users