[Insight-users] SimpleITK testing in Python

[Matt McCormick]

Hi David,

If SimpleITK is using your system Python, then you will need to
install numpy into your system Python -- it will not use the other
version.

Thanks,
Matt

On Thu, Dec 8, 2011 at 12:20 PM, David Welch <david.m.welch at gmail.com> wrote:
> Matt,
>
> Works like a charm.  I have all but three tests passing now: Python.OtsuThreshold, Registration.Simple and Python.Test.Numpy.
>
> I believe the last is caused b/c the submodule SimpleITK.numpy points to my out-of-date OSX Python framework version as opposed to my /Library/Python/site-packages version.  Is there a CMake flag to control that or is this intended?
>
> -Dave
>
> ----
> David Welch
> david.m.welch at gmail.com
>
> Something you entered
> transcended parameters.
> So much is unknown.
>
> -Salon Magazine, Error Haiku Challenge
>
>
> On 30Nov, 2011, at 5:22 PM, Matt McCormick wrote:
>
>> Hi Dave,
>>
>> Please try
>>
>>  git submodule update --init
>>
>> at the top of the source tree.
>>
>> Thanks,
>> Matt
>>
>> On Wed, Nov 30, 2011 at 6:10 PM, David Welch <david.m.welch at gmail.com> wrote:
>>> Thanks, Bill.  The tests run, but almost all fail.  Using the -VV flag, I see the first ~10 are looking for the Input/ directory from the SimpleITKData repository.  How do I point CTest (or SITK) to this directory?
>>>
>>> -Dave
>>>
>>> --
>>> David Welch
>>> david.m.welch at gmail.com
>>>
>>>
>>>
>>> On 30Nov, 2011, at 1:53 PM, Bill Lorensen wrote:
>>>
>>>> Try typing ctest at the top[ of your build tree.
>>>>
>>>>
>>>> On Wed, Nov 30, 2011 at 2:41 PM, David Welch <david.m.welch at gmail.com> wrote:
>>>>> Hello all,
>>>>> I've installed SimpleITK with Python wrapping and testing ON, but now that
>>>>> I've finished my build, I cannot see how to test it.  After building with
>>>>> CMake, I did the following:
>>>>> *******************************************
>>>>> $ cd Wrapping/
>>>>> $ python PythonPackage/setup.py install
>>>>> $ python
>>>>>>>> import SimpleITK as sitk
>>>>>>>> sitk.test("1")
>>>>> Traceback (most recent call last):
>>>>>   File "<stdin>", line 1, in <module>
>>>>> AttributeError: 'module' object has no attribute 'test'
>>>>> *******************************************
>>>>> Looking at the SimpleITK Jira site, there is a Python virtualenv to test the
>>>>> python install ( https://issues.itk.org/jira/browse/SIMPLEITK-163 ) but it
>>>>> doesn't seem to address testing SimpleITK itself.
>>>>> In the build folder, there is a Testing/Unit/PythonTests folder with many
>>>>> test files, but running them from the command line gives an error "Usage:
>>>>> FooBar tag <input(s)> output".  I can't find any documentation to help me,
>>>>> either.
>>>>> Cheers,
>>>>> Dave
>>>>> ----
>>>>> David Welch
>>>>> david.m.welch at gmail.com
>>>>>
>>>>> Something you entered
>>>>> transcended parameters.
>>>>> So much is unknown.
>>>>> -Salon Magazine, Error Haiku Challenge
>>>>>
>>>>>
>>>>>
>>>>> _____________________________________
>>>>> Powered by www.kitware.com
>>>>>
>>>>> Visit other Kitware open-source projects at
>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>
>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>> http://www.kitware.com/products/protraining.html
>>>>>
>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>
>>>>> Follow this link to subscribe/unsubscribe:
>>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> Unpaid intern in BillsBasement at noware dot com
>>>
>>> _____________________________________
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Kitware offers ITK Training Courses, for more information visit:
>>> http://www.kitware.com/products/protraining.html
>>>
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>>
>>> Follow this link to subscribe/unsubscribe:
>>> http://www.itk.org/mailman/listinfo/insight-users
>