[Insight-users] problem with Chan and Vese method of segmentation

Wed Jan 19 13:26:39 EST 2011

Hi all,

There is *NO* need for borrowing the Insight Journal classes. Please
make sure that you compile ITK with the Review option turned on.

The level set filters were renamed and moved to the ITK/Code/Review folders.

Two examples of using the dense and sparse field filters are located
at ITK/Examples/Review/itkScalarSinglePhaseDense2DTest.cxx and
ITK/Examples/Review/itkScalarSinglePhaseSparse2DTest.cxx.

There are also numerous examples of its usage at
ITK/Testing/Code/Review/. You can grep the relevant files in that
folder.

I am able to compile and use these filters with ITK4.0. If you face
any further difficulties, please send me the error message.

Kishore

On Tue, Jan 18, 2011 at 6:57 AM, Juan Cardelino
<juan.cardelino at gmail.com> wrote:
> Hello Julien,
> Where you been able to do solve this? I've been struggling with the
> same issue without luck. I'm using ITK 3.19, and I get the following
> results:
> * If I remove everything but the main, the includes are not found.
> * If I add them, it seems that they conflict somehow with the
> installed ITK classes.
> If someone is interested, I could upload the error I got.
>
> For the original authors,
> I gave it a try with ITK 4.0 from GIT but there were some classes that
> have been refactored (itkEuclideanDistance).  So I fell back to 3.19.
> Are you planning to update this? or have you already done it?
> In addition, would it be possible to enumerate explicitly which
> classes are required and which not? It is really hard to tell at the
> begining.
>
> Thanks in advance and great work.
> Best regards,
>                   Juan
>
>
> On Wed, Jun 23, 2010 at 4:26 AM, julien_s <surchenjohn at gmail.com> wrote:
>>
>> I did a folder just with my .cxx et a CMakeList.txt but I have errors because
>> my file .cxx include ".h" which were present in the Insight Journal Folders
>> but not in the Review folder.
>>
>> For example : "itkSparseMultiphaseLevelSetImageFilter.h"
>>
>>
>> (Maybe I also make some errros in the next CMakelist:
>>
>> # This is the root ITK CMakeLists file.
>> CMAKE_MINIMUM_REQUIRED(VERSION 2.4)
>> IF(COMMAND CMAKE_POLICY)
>>  CMAKE_POLICY(SET CMP0003 NEW)
>> ENDIF(COMMAND CMAKE_POLICY)
>>
>>
>> # This project is designed to be built outside the Insight sourcetree.
>> PROJECT(ScalarMultiPhase2DTest)
>>
>> # Find ITK.
>> FIND_PACKAGE(ITK REQUIRED)
>> INCLUDE(${ITK_USE_FILE})
>>
>> ADD_EXECUTABLE(ScalarMultiPhase2DTest ScalarMultiPhase2DTest.cxx )
>>
>> TARGET_LINK_LIBRARIES(ScalarMultiPhase2DTest ITKCommon)
>> TARGET_LINK_LIBRARIES(ScalarMultiPhase2DTest ITKNumerics ITKIO)
>> TARGET_LINK_LIBRARIES(ScalarMultiPhase2DTest ITKReview)
>>
>>
>>
>>
>> Kishore Mosaliganti wrote:
>>>
>>> Hi Surcin,
>>>
>>> You don't have to make any changes in the ITK source folder. After
>>> downloading ITK, use cmake and build it.
>>>
>>> In your project folder, you just need the main.cxx file with a
>>> CMakeLists.txt and build it.
>>>
>>> You don't need the Insight Journal classes at all.
>>>
>>> Kishore
>>>
>>> On Tue, Jun 22, 2010 at 7:23 AM, julien_s <surchenjohn at gmail.com> wrote:
>>>>
>>>> First, thank you for your help
>>>>
>>>> Now,I compiled ITK with ITK_USE_REVIEW turned on.
>>>>
>>>> About the Review folder, if I understand, I have to replace the classes
>>>> downloaded from the Insight Journal by the classes available in the
>>>> Review
>>>> Folder?
>>>> I tried to do that but I have a lot of errors so I think I didn't
>>>> understand.
>>>>
>>>>
>>>>
>>>>
>>>> Kishore Mosaliganti wrote:
>>>>>
>>>>> Hi Surcin,
>>>>>
>>>>> These set of filters were moved to the ITK Review folder and
>>>>> subsequent changes were made to the filters directly in the Review
>>>>> folders.
>>>>>
>>>>> Therefore, in your project, you should compile ITK with the
>>>>> ITK_USE_REVIEW turned on in the cmake configuration. You can eliminate
>>>>> the classes that you downloaded from the Insight Journal.
>>>>>
>>>>> Can you then repeat your example and let us know how it goes.
>>>>>
>>>>> Kishore
>>>>>
>>>>> On Mon, Jun 21, 2010 at 1:03 PM, Surcin Julien <juliensurcin at gmail.com>
>>>>> wrote:
>>>>>> Dear ITK users,
>>>>>>
>>>>>> I'm working on the Chan and Vese method of segmentation.
>>>>>> Consequently I tried to use the example of the next publication:
>>>>>>
>>>>>> http://www.insight-journal.org/browse/publication/322
>>>>>>
>>>>>> I have no errors during the compilation but I have execution errors.
>>>>>>
>>>>>> "Debug Assertion Failed!
>>>>>>
>>>>>> Program:
>>>>>> ..eContoursWhithoutEdges\
>>>>>> Debug\ScalarSinglePhaseSparse2DTest.exe
>>>>>> File:C:\Program Files\Microsoft Visual Studio 9.0\include\vector
>>>>>> Line:779
>>>>>>
>>>>>> Expression:vector subscript out of range"
>>>>>>
>>>>>>
>>>>>> In fact, it is the same error that in the next post :
>>>>>> http://www.itk.org/pipermail/insight-users/2009-May/030324.html
>>>>>>
>>>>>> (I use Visual Studio 2008 on Windows Vista)
>>>>>>
>>>>>> I'm searching a solution for one week but I don't find a solution.
>>>>>>
>>>>>> Thanks in advance,
>>>>>>
>>>>>> Julien Surcin
>>>>>>
>>>>>> Student in 4th year at Polytech'Orleans, School of Engineering, FRANCE
>>>>>>
>>>>>> _____________________________________
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>>>>>>
>>>>> _____________________________________
>>>>> Powered by www.kitware.com
>>>>>
>>>>> Visit other Kitware open-source projects at
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>>>>>
>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>> http://www.kitware.com/products/protraining.html
>>>>>
>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>
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>>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>>
>>>>>
>>>>
>>>> --
>>>> View this message in context:
>>>> http://old.nabble.com/problem-with-Chan-and-Vese-method-of-segmentation-tp28951053p28958913.html
>>>> Sent from the ITK - Users mailing list archive at Nabble.com.
>>>>
>>>> _____________________________________
>>>> Powered by www.kitware.com
>>>>
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>>
>>>> Kitware offers ITK Training Courses, for more information visit:
>>>> http://www.kitware.com/products/protraining.html
>>>>
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>
>>>> Follow this link to subscribe/unsubscribe:
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>>> _____________________________________
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Kitware offers ITK Training Courses, for more information visit:
>>> http://www.kitware.com/products/protraining.html
>>>
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>>
>>> Follow this link to subscribe/unsubscribe:
>>> http://www.itk.org/mailman/listinfo/insight-users
>>>
>>>
>>
>> --
>> View this message in context: http://old.nabble.com/problem-with-Chan-and-Vese-method-of-segmentation-tp28951053p28968627.html
>> Sent from the ITK - Users mailing list archive at Nabble.com.
>>
>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.html
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://www.itk.org/mailman/listinfo/insight-users
>>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.html
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://www.itk.org/mailman/listinfo/insight-users
>