[Insight-users] problem with Chan and Vese method of segmentation

Wed Jan 19 13:43:31 EST 2011

Hi Juan and Julien,

In case you want to use more than one levelset (multi levelset), then
I have added an example on Insightclopedia. Here is the link:

http://www.itk.org/Wiki/ITK/Examples#Image_Segmentation
http://www.itk.org/Wiki/ITK/Examples/Segmentation/MultiphaseChanAndVeseSparseFieldLevelSetSegmentation#MultiphaseChanAndVeseSparseFieldLevelSetSegmentation.cxx

Kishore

On Wed, Jan 19, 2011 at 1:26 PM, Kishore Mosaliganti
<kishoreraom at gmail.com> wrote:
> Hi all,
>
> There is *NO* need for borrowing the Insight Journal classes. Please
> make sure that you compile ITK with the Review option turned on.
>
> The level set filters were renamed and moved to the ITK/Code/Review folders.
>
> Two examples of using the dense and sparse field filters are located
> at ITK/Examples/Review/itkScalarSinglePhaseDense2DTest.cxx and
> ITK/Examples/Review/itkScalarSinglePhaseSparse2DTest.cxx.
>
> There are also numerous examples of its usage at
> ITK/Testing/Code/Review/. You can grep the relevant files in that
> folder.
>
> I am able to compile and use these filters with ITK4.0. If you face
> any further difficulties, please send me the error message.
>
> Kishore
>
> On Tue, Jan 18, 2011 at 6:57 AM, Juan Cardelino
> <juan.cardelino at gmail.com> wrote:
>> Hello Julien,
>> Where you been able to do solve this? I've been struggling with the
>> same issue without luck. I'm using ITK 3.19, and I get the following
>> results:
>> * If I remove everything but the main, the includes are not found.
>> * If I add them, it seems that they conflict somehow with the
>> installed ITK classes.
>> If someone is interested, I could upload the error I got.
>>
>> For the original authors,
>> I gave it a try with ITK 4.0 from GIT but there were some classes that
>> have been refactored (itkEuclideanDistance).  So I fell back to 3.19.
>> Are you planning to update this? or have you already done it?
>> In addition, would it be possible to enumerate explicitly which
>> classes are required and which not? It is really hard to tell at the
>> begining.
>>
>> Thanks in advance and great work.
>> Best regards,
>>                   Juan
>>
>>
>> On Wed, Jun 23, 2010 at 4:26 AM, julien_s <surchenjohn at gmail.com> wrote:
>>>
>>> I did a folder just with my .cxx et a CMakeList.txt but I have errors because
>>> my file .cxx include ".h" which were present in the Insight Journal Folders
>>> but not in the Review folder.
>>>
>>> For example : "itkSparseMultiphaseLevelSetImageFilter.h"
>>>
>>>
>>> (Maybe I also make some errros in the next CMakelist:
>>>
>>> # This is the root ITK CMakeLists file.
>>> CMAKE_MINIMUM_REQUIRED(VERSION 2.4)
>>> IF(COMMAND CMAKE_POLICY)
>>>  CMAKE_POLICY(SET CMP0003 NEW)
>>> ENDIF(COMMAND CMAKE_POLICY)
>>>
>>>
>>> # This project is designed to be built outside the Insight sourcetree.
>>> PROJECT(ScalarMultiPhase2DTest)
>>>
>>> # Find ITK.
>>> FIND_PACKAGE(ITK REQUIRED)
>>> INCLUDE(${ITK_USE_FILE})
>>>
>>> ADD_EXECUTABLE(ScalarMultiPhase2DTest ScalarMultiPhase2DTest.cxx )
>>>
>>> TARGET_LINK_LIBRARIES(ScalarMultiPhase2DTest ITKCommon)
>>> TARGET_LINK_LIBRARIES(ScalarMultiPhase2DTest ITKNumerics ITKIO)
>>> TARGET_LINK_LIBRARIES(ScalarMultiPhase2DTest ITKReview)
>>>
>>>
>>>
>>>
>>> Kishore Mosaliganti wrote:
>>>>
>>>> Hi Surcin,
>>>>
>>>> You don't have to make any changes in the ITK source folder. After
>>>> downloading ITK, use cmake and build it.
>>>>
>>>> In your project folder, you just need the main.cxx file with a
>>>> CMakeLists.txt and build it.
>>>>
>>>> You don't need the Insight Journal classes at all.
>>>>
>>>> Kishore
>>>>
>>>> On Tue, Jun 22, 2010 at 7:23 AM, julien_s <surchenjohn at gmail.com> wrote:
>>>>>
>>>>> First, thank you for your help
>>>>>
>>>>> Now,I compiled ITK with ITK_USE_REVIEW turned on.
>>>>>
>>>>> About the Review folder, if I understand, I have to replace the classes
>>>>> downloaded from the Insight Journal by the classes available in the
>>>>> Review
>>>>> Folder?
>>>>> I tried to do that but I have a lot of errors so I think I didn't
>>>>> understand.
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> Kishore Mosaliganti wrote:
>>>>>>
>>>>>> Hi Surcin,
>>>>>>
>>>>>> These set of filters were moved to the ITK Review folder and
>>>>>> subsequent changes were made to the filters directly in the Review
>>>>>> folders.
>>>>>>
>>>>>> Therefore, in your project, you should compile ITK with the
>>>>>> ITK_USE_REVIEW turned on in the cmake configuration. You can eliminate
>>>>>> the classes that you downloaded from the Insight Journal.
>>>>>>
>>>>>> Can you then repeat your example and let us know how it goes.
>>>>>>
>>>>>> Kishore
>>>>>>
>>>>>> On Mon, Jun 21, 2010 at 1:03 PM, Surcin Julien <juliensurcin at gmail.com>
>>>>>> wrote:
>>>>>>> Dear ITK users,
>>>>>>>
>>>>>>> I'm working on the Chan and Vese method of segmentation.
>>>>>>> Consequently I tried to use the example of the next publication:
>>>>>>>
>>>>>>> http://www.insight-journal.org/browse/publication/322
>>>>>>>
>>>>>>> I have no errors during the compilation but I have execution errors.
>>>>>>>
>>>>>>> "Debug Assertion Failed!
>>>>>>>
>>>>>>> Program:
>>>>>>> ..eContoursWhithoutEdges\
>>>>>>> Debug\ScalarSinglePhaseSparse2DTest.exe
>>>>>>> File:C:\Program Files\Microsoft Visual Studio 9.0\include\vector
>>>>>>> Line:779
>>>>>>>
>>>>>>> Expression:vector subscript out of range"
>>>>>>>
>>>>>>>
>>>>>>> In fact, it is the same error that in the next post :
>>>>>>> http://www.itk.org/pipermail/insight-users/2009-May/030324.html
>>>>>>>
>>>>>>> (I use Visual Studio 2008 on Windows Vista)
>>>>>>>
>>>>>>> I'm searching a solution for one week but I don't find a solution.
>>>>>>>
>>>>>>> Thanks in advance,
>>>>>>>
>>>>>>> Julien Surcin
>>>>>>>
>>>>>>> Student in 4th year at Polytech'Orleans, School of Engineering, FRANCE
>>>>>>>
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>>>>>> _____________________________________
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>>>>>>
>>>>>
>>>>> --
>>>>> View this message in context:
>>>>> http://old.nabble.com/problem-with-Chan-and-Vese-method-of-segmentation-tp28951053p28958913.html
>>>>> Sent from the ITK - Users mailing list archive at Nabble.com.
>>>>>
>>>>> _____________________________________
>>>>> Powered by www.kitware.com
>>>>>
>>>>> Visit other Kitware open-source projects at
>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>
>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>> http://www.kitware.com/products/protraining.html
>>>>>
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>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>
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>>>>>
>>>> _____________________________________
>>>> Powered by www.kitware.com
>>>>
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>>
>>>> Kitware offers ITK Training Courses, for more information visit:
>>>> http://www.kitware.com/products/protraining.html
>>>>
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>
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>>>>
>>>
>>> --
>>> View this message in context: http://old.nabble.com/problem-with-Chan-and-Vese-method-of-segmentation-tp28951053p28968627.html
>>> Sent from the ITK - Users mailing list archive at Nabble.com.
>>>
>>> _____________________________________
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Kitware offers ITK Training Courses, for more information visit:
>>> http://www.kitware.com/products/protraining.html
>>>
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>>
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>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.html
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
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>