[Insight-users] 3D Slicer

[Andrew Top]

Hi, you can also try using TurtleSeg to view the 3D image, and even outline
an object in it for better visualization of its surface.  You can download
TurtleSeg here: http://www.turtleseg.org/

TurtleSeg cannot directly read "bmp" or "tif" files though.  In the case of
uncompressed files (as would be the case with a series of "bmp" images), you
can create a MetaImage header file (such as "image.mhd") and enter in to it
the following text to describe properties of the 3D image:

ObjectType = Image
NDims = 3
DimSize = 512 512 100
ElementType = MET_USHORT
HeaderSize = -1
ElementSize = 1 1 3
ElementSpacing = 1 1 1
ElementByteOrderMSB = False
ElementDataFile = LIST
filenameOfSlice1
filenameOfSlice2
filenameOfSlice3
filenameOfSlice4
.
. (one hundred filenames must be specified to specify the 100 slices in the
volume)
.

For more information, see here:
http://www.vtk.org/Wiki/MetaIO/Documentation#Reading_DICOM_and_Other_One-Slice-Per-File_Data_Formats

Then, you can open this new MHD file with TurtleSeg in order to open the
series of images as a 3D image.

    Andrew



faba wrote:
> 
> Dear Friend,
> I have a series of image slices with "bmp" or "tif" format numbered from
> 1-99 and I am trying to make a 3D visualization of these data. Has anyone
> knows which program or ready to use package I can use for this purpose? I
> already tried MeVislab but it seems it has problem reading these series
> which are not dicom.
> 
> any advices is really appreciated
> 
> fari
> 
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