[Insight-users] SimpleITK / jar wrapper?

[aptea at mskcc.org]

Hello Brad,

Thanks for your reply. I tried to build SimpleITK using the following procedure:
git clone --recursive  http://itk.org/SimpleITK.git
mkdir SimpleITK-build
cd SimpleITK-build

Then, I used “make” to build SimpleITK. It ran until 32% completion, and gave the following message:

Linking CXX shared module ../lib/simpleitk.bundle
ld: framework not found ruby
collect2: ld returned 1 exit status
make[5]: *** [lib/simpleitk.bundle] Error 1
make[4]: *** [Wrapping/CMakeFiles/simpleitk.dir/all] Error 2
make[3]: *** [all] Error 2
make[2]: *** [SimpleITK-prefix/src/SimpleITK-stamp/SimpleITK-build] Error 2
make[1]: *** [CMakeFiles/SimpleITK.dir/all] Error 2
make: *** [all] Error 2

It did create simpleitk-0.4.0.jar file under SimpleITK-build/Wrapper directory. Then, I tried to use this .jar file within Matlab. For this, I added  the file to classpath, but I am not able to load the classes within this file as described in the examples. For example, org.itk.simple.ImageFileReader could not be accessed and so on. The documentation under http://www.itk.org/SimpleITKDoxygen/html/Wrapping.html mentions that I should get org.itk.simple.jar file that contains the required classes. But I did not get this file when I built SimpleITK. So I am confused about where to find the java classes that wrap ITK functions.

Thanks,
Aditya



On 4/18/12 3:49 PM, "Bradley Lowekamp" <blowekamp at mail.nih.gov> wrote:

Hello,

The SimpleITK Getting Started wiki page a a section for Binaries:

http://www.itk.org/Wiki/ITK_Release_4/SimpleITK/GettingStarted#Binaries

Which points to SourceForge for the Java Binaries:

http://sourceforge.net/projects/simpleitk/files/SimpleITK/0.4.0/Java/


Where there is a download for Java for MacOSX 10.6:

SimpleITK-0.4.0-Java-maxosx-10.6-intel.zip <http://sourceforge.net/projects/simpleitk/files/SimpleITK/0.4.0/Java/SimpleITK-0.4.0-Java-maxosx-10.6-intel.zip/download>

This would likely also work for macOSX 10.7 as well.

I also would like to know what was the issue when you tried to compile SimpleITK on OSX.

Thanks,
Brad



On Apr 18, 2012, at 3:32 PM, aptea at mskcc.org wrote:

SimpleITK / jar wrapper?
Are SimpleITK Wrapper .jar files available for download?
I failed to build SimpleITK for Mac OS X, so was wondering if I could use the binaries directly?
Many thanks!


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