[Insight-users] SimpleITK / jar wrapper?

[Bradley Lowekamp]

Hello,

It appears that the Wrapping read me is a bit out of date. It would be good if you could add this issue to the SimpleITK issue tracker:

https://itk.icts.uiowa.edu/jira/browse/SIMPLEITK

This visual guide is mostly current:

http://www.vtk.org/Wiki/A_visual_guide_to_SimpleITK_in_Java

I believe the bit you need are:

SimpleITK-build/Wrapping/simpleitk-0.5.0.jar
SimpleITK-build/Wrapping/simpleitk-javadoc-0.5.0.jar
SimpleITK-build/Wrapping/simpleitk-source-0.5.0.jar

Then there is the needed java native shared library which currently is here:

SimpleITK-build/lib/libSimpleITKJava.jnilib

Which has moved since the release version from SimpleITK-build/Wrapping.



On Apr 18, 2012, at 4:08 PM, aptea at mskcc.org wrote:

> Hello Brad,
> 
> Thanks for your reply. I tried to build SimpleITK using the following procedure:
> git clone --recursive  http://itk.org/SimpleITK.git
> mkdir SimpleITK-build
> cd SimpleITK-build
> 
> Then, I used “make” to build SimpleITK. It ran until 32% completion, and gave the following message:
> 
> Linking CXX shared module ../lib/simpleitk.bundle
> ld: framework not found ruby
> collect2: ld returned 1 exit status
> make[5]: *** [lib/simpleitk.bundle] Error 1
> make[4]: *** [Wrapping/CMakeFiles/simpleitk.dir/all] Error 2
> make[3]: *** [all] Error 2
> make[2]: *** [SimpleITK-prefix/src/SimpleITK-stamp/SimpleITK-build] Error 2
> make[1]: *** [CMakeFiles/SimpleITK.dir/all] Error 2
> make: *** [all] Error 2
> 
> It did create simpleitk-0.4.0.jar file under SimpleITK-build/Wrapper directory. Then, I tried to use this .jar file within Matlab. For this, I added  the file to classpath, but I am not able to load the classes within this file as described in the examples. For example, org.itk.simple.ImageFileReader could not be accessed and so on. The documentation under http://www.itk.org/SimpleITKDoxygen/html/Wrapping.html mentions that I should get org.itk.simple.jar file that contains the required classes. But I did not get this file when I built SimpleITK. So I am confused about where to find the java classes that wrap ITK functions.
> 
> Thanks,
> Aditya
> 
> 
> 
> On 4/18/12 3:49 PM, "Bradley Lowekamp" <blowekamp at mail.nih.gov> wrote:
> 
>> Hello,
>> 
>> The SimpleITK Getting Started wiki page a a section for Binaries:
>> 
>> http://www.itk.org/Wiki/ITK_Release_4/SimpleITK/GettingStarted#Binaries
>> 
>> Which points to SourceForge for the Java Binaries:
>> 
>> http://sourceforge.net/projects/simpleitk/files/SimpleITK/0.4.0/Java/
>> 
>> 
>> Where there is a download for Java for MacOSX 10.6:
>> 
>> SimpleITK-0.4.0-Java-maxosx-10.6-intel.zip <http://sourceforge.net/projects/simpleitk/files/SimpleITK/0.4.0/Java/SimpleITK-0.4.0-Java-maxosx-10.6-intel.zip/download> 
>> 
>> This would likely also work for macOSX 10.7 as well.
>> 
>> I also would like to know what was the issue when you tried to compile SimpleITK on OSX.
>> 
>> Thanks,
>> Brad
>> 
>> 
>> 
>> On Apr 18, 2012, at 3:32 PM, aptea at mskcc.org wrote:
>> 
>>> SimpleITK / jar wrapper? 
>>> Are SimpleITK Wrapper .jar files available for download?
>>> I failed to build SimpleITK for Mac OS X, so was wondering if I could use the binaries directly?
>>> Many thanks!
>>> 
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>> ========================================================
>> 
>> Bradley Lowekamp 
>> 
>> Medical Science and Computing for
>> 
>> Office of High Performance Computing and Communications
>> 
>> National Library of Medicine 
>> 
>> blowekamp at mail.nih.gov
>> 
>> 
>> 
>> 

========================================================
Bradley Lowekamp  
Medical Science and Computing for
Office of High Performance Computing and Communications
National Library of Medicine 
blowekamp at mail.nih.gov



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