[Insight-users] Segmentation data

[criskross]

Hi, 

what I even didn't understand is how to save for example a transformation or
windowing as a file which describes even the process to get the resulting
image. Do you unterstand what I would like to get? 

Example: I am a physician and I would like to mark a tumor within image data
of a brain.  I don't want to change the original image data but I would like
to save a description of how to segment the image for displaying the tumor. 

I even did not find any information about this topic within the itk guide. 

Could someone please help me?` 

I would be deeply grateful. 

Christian 


cagatay bilgin-2 wrote:
> 
> Hi Criskross,
> 
> 
> You can save your image as a tiff file.
> 
> mhd files are not special files to save
> 
> segmentation. In fact they are just binary
> 
> images. Here is an example on how you
> 
> can save your segmentated image as tiff.
> 
> 
>   typedef  itk::ImageFileWriter< ImageType  > WriterType;
>   WriterType::Pointer writer = WriterType::New();
>   writer->SetFileName("out.tif");
>   writer->SetInput(segmentedImage);
>   writer->Update();
> 
> 
> Cheers,
> Cagatay
> 
> On Tue, Aug 7, 2012 at 2:02 AM, criskross
> <christianherz1985 at googlemail.com>wrote:
> 
>>
>> Ok now I have an overview of chapter 9 but I can't find any explanation
>> how
>> to save segmentation data as a metafile or somesthing else. Is there any
>> documentation which describes all fileformats?
>>
>>
>>
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> _____________________________________
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> 
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> 
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
> 
> Please keep messages on-topic and check the ITK FAQ at:
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