[Insight-users] [ITK3] ITK3.20 + VTK5.6.1 + GDCM 2.2

[Kent Williams]

I should also mention that sometime after ITK 4.1 the GDCM support
will be deprecated, and ITK will be using DCMTK instead.  There are
some technical and maintenance reasons for this, but it wouldn't hurt
if you're serious about DICOM, it would be a good thing to get DCMTK
and learn to use it.

On Tue, Mar 13, 2012 at 11:54 AM, Marta Peroni <m.peroni at gmail.com> wrote:
> Hi!
> I'm in need of having the version of ITK/VTK/GDCM mentioned in the subject
> communicating together for one project. I'm stuck with ITK and VTK versions
> (i.e. canNOT modify them).
> I'd love to have GDCM 2 though instead of GDCM 1.
>
> I can successfully configure VTK5.6 + GDCM 2.2 and runs beautifully.
> I am not able to add ITK though.
>
> at first I had the vtkmetaio error, which I solved with this:
>
> now, I set ITK_USE_SYSTEM_GDCM and make sure to link to correct folders. I
> can configure, but cannot compile.....
> first line of make:
>
> ../../bin/libITKIO.a(itkGDCMImageIO.o): In function
> `itk::GDCMImageIO::CanReadFile(char const*)':
> itkGDCMImageIO.cxx:(.text+0x136a): undefined reference to
> `gdcm::Reader::SetFileName(char const*)'
> ../../bin/libITKIO.a(itkGDCMImageIO.o): In function
> `itk::GDCMImageIO::Read(void*)':
> itkGDCMImageIO.cxx:(.text+0x14a8): undefined reference to
> `gdcm::Reader::SetFileName(char const*)'
> itkGDCMImageIO.cxx:(.text+0x18a0): undefined reference to
> `gdcm::Unpacker12Bits::Unpack(char*, char const*, unsigned long)'
> ../../bin/libITKIO.a(itkGDCMImageIO.o): In function
> `itk::GDCMImageIO::InternalReadImageInformation(std::basic_ifstream<char,
> std::char_traits<char> >&)':
> itkGDCMImageIO.cxx:(.text+0x1e8d): undefined reference to
> `gdcm::Reader::SetFileName(char const*)'
> ../../bin/libITKIO.a(itkGDCMImageIO.o): In function
> `itk::GDCMImageIO::Write(void const*)':
> itkGDCMImageIO.cxx:(.text+0x32e1): undefined reference to
> `gdcm::FileMetaInformation::AppendImplementationClassUID(char const*)'
> itkGDCMImageIO.cxx:(.text+0x3364): undefined reference to
> `gdcm::FileMetaInformation::SetSourceApplicationEntityTitle(char const*)'
> itkGDCMImageIO.cxx:(.text+0x3393): undefined reference to
> `gdcm::Global::GetInstance()'
> itkGDCMImageIO.cxx:(.text+0x33a3): undefined reference to
> `gdcm::Global::GetDicts()'
> itkGDCMImageIO.cxx:(.text+0x33b3): undefined reference to
> `gdcm::Dicts::GetPublicDict() const'
> itkGDCMImageIO.cxx:(.text+0x34f3): undefined reference to
> `gdcm::Tag::ReadFromPipeSeparatedString(char const*)'
> itkGDCMImageIO.cxx:(.text+0x372d): undefined reference to
> `gdcm::VR::IsVRFile() const'
> itkGDCMImageIO.cxx:(.text+0x5ae9): undefined reference to
> `gdcm::Writer::SetFileName(char const*)'
> ../../bin/libITKIO.a(itkGDCMImageIO.o): In function
> `itk::GDCMImageIO::GetLabelFromTag(std::basic_string<char,
> std::char_traits<char>, std::allocator<char> > const&,
> std::basic_string<char, std::char_traits<char>, std::allocator<char> >&)':
> itkGDCMImageIO.cxx:(.text+0x6a77): undefined reference to
> `gdcm::Tag::ReadFromPipeSeparatedString(char const*)'
> itkGDCMImageIO.cxx:(.text+0x6aa0): undefined reference to
> `gdcm::Global::GetInstance()'
> itkGDCMImageIO.cxx:(.text+0x6ab0): undefined reference to
> `gdcm::Global::GetDicts() const'
> itkGDCMImageIO.cxx:(.text+0x6acc): undefined reference to
> `gdcm::Dicts::GetDictEntry(gdcm::Tag const&, char const*) const'
>
>
> I saw many ppl having this issue, so I wonder if I just have to surrender...
> by the way, I'm on Arch linux 64 bits, and I cannot install libraries
> because I need multiple versions of GDCM and VTK (I mean same version but
> different options turned on :)
> thanks
> Marta
>
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