[Insight-users] Segmentation fault using SurfaceCurvature with ITK+ANTS

[brian avants]

you are probably running out of RAM


brian




On Tue, Aug 6, 2013 at 12:50 PM, 张晶晶 <zhangjj831203 at gmail.com> wrote:

> yes, the file is almost 1G.
>
> is there upper limit of the input file?
>
>
>
>
> 2013/8/6 brian avants <stnava at gmail.com>
>
>> it may be related to that file - is it huge in size?
>>
>> also - please stay on the discussion list
>>
>>
>> brian
>>
>>
>>
>>
>> On Tue, Aug 6, 2013 at 12:17 PM, 张晶晶 <zhangjj831203 at gmail.com> wrote:
>>
>>> Hi Brian,
>>>
>>> Many thanks for your reply. I also post this problem to ANTs mailing
>>> list.
>>>
>>> I have successfully compiled ITK4.4.1+latest ANTs under centos system.
>>>
>>> SurfaceCurvature run successfully with other data file, for example
>>> "canon_hist_half_resolution.nii".
>>>
>>> Then, I tried it with my own datafile 0846.nii and got such
>>> segmentation fault.
>>>
>>> Is it related to my datafile?
>>>
>>> Jingjing Zhang
>>>
>>>
>>>
>>> 2013/8/6 brian avants <stnava at gmail.com>
>>>
>>>> hi
>>>>
>>>> this is really an ANTs question better dealt with here:
>>>>
>>>> http://sourceforge.net/p/advants/discussion/840261/
>>>>
>>>> questions about ANTs or ITK should involve some details:
>>>>
>>>>  * what is your specific platform?
>>>>
>>>>  * what is the version of the software you are using?
>>>>
>>>>   * did you compile from source?
>>>>
>>>>  *  did you try the same thing on other data?
>>>>
>>>> *  did you try any other ANTs or ITK programs on this data?
>>>>
>>>> and things like that.
>>>>
>>>>
>>>>
>>>> brian
>>>>
>>>>
>>>>
>>>>
>>>> On Tue, Aug 6, 2013 at 11:12 AM, 张晶晶 <zhangjj831203 at gmail.com> wrote:
>>>>
>>>>> I tried to use the SurfaceCurvature under LINUX but got the
>>>>> segmentation fault as follows:
>>>>>
>>>>> [root at localhost surface]# ./SurfaceCurvature 0846.nii 0846out.nii 3 6
>>>>>  sigma 3
>>>>> Segmentation fault
>>>>>
>>>>> What's does that mean?
>>>>>
>>>>> How to do with that?
>>>>>
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>>>>
>>>
>>
>
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