[Insight-users] [ANNOUNCEMENT] ITK 4.3 has been released!
Alessandro
notinmyhead at gmail.com
Thu Jan 10 09:56:07 EST 2013
Hi,
I'm wondering if there is a reason to do not correct the know bug in GDCM SeriesHelper.
Thanks,
Ale
Il giorno 26/dic/2012, alle ore 21.43, Matt McCormick ha scritto:
> The Insight Software Consortium is happy to announce the release of ITK 4.3!
>
> The 4.3 release is a major milestone that marks the hard work of many
> outstanding community members.
>
>
> Links to the Sourceforge.net tarballs can be found on the download page:
>
> http://www.itk.org/ITK/resources/software.html
>
>
> InsightToolkit 4.3.1 tarballs were created after a bug in the
> PhilipsRecImageIO was discovered immediately after the 4.3.0 tag was
> pushed.
>
>
> We are excited to announce that experimental DICOM image reading is
> available via the DCMTK library as a backend in addition to the GDCM
> library. By default, DCMTK ImageIO support is not enabled. To try
> DCMTK ImageIO support, turn the CMake option Module_ITKIODCMTK ON.
> For Unix platforms, the supporting DCMTK library will automatically be
> built as a CMake ExternalProject. On Windows, the DCMTK library must
> be built independently of the ITK build system. Then, specify the
> location to the external build after setting the CMake option
> ITK_USE_SYSTEM_DCMTK ON.
>
> WrapITK has undergone extensive improvements and bug fixes. The status
> of WrapITK on various platforms can be found on the following Wiki
> page:
>
> http://www.itk.org/Wiki/ITK/WrapITK_Status
>
> A number of registration-related feature enhancements were added. The
> image registration methods have been updated to accommodate multiple
> image metrics within a single optimization scheme. This permits, for
> example, registration of a T1/T2 fixed image pair with a T1/T2 moving
> image pair using a single metric for both T1 and T2 gradients or even
> using two different metrics. New exponential transforms are available
> along with automated B-Spline transform scale estimation. A new
> physics-based non-rigid registration class is also available.
>
> Updated third-party library versions include:
> * NrrdIO from Teem 1.11,
> * libtiff 4.03,
> * FFTW 3.3.2
>
> A large number of important bugs were crushed, including fixes to the
> ObjectFactoryBase, Patch-Based Denoising improvements, support for a
> system libtiff, mesh processing, and FFTW use.
>
> Support for itk::VectorImage’s was added to many algorithms, and a
> single templated Adaptor class can now be applied without modification
> to both itk::VectorImage’s and itk::Image’s of itk::Vector’s,
> itk::RGBPixel’s, etc.
>
> An extensive amount of code cruft was removed and coding style was
> made more consistent; ITK gets more stylish and classy with every
> release!
>
> Performance optimizations were achieved by removing GetInput/GetOutput
> calls within filter inner loops, improving memory alignment, memory
> access pattern optimizations, and parallelization through threading.
>
> NOTE: As previously scheduled, Visual Studio 2005 will no longer be
> supported after this release.
>
> Changes from v4.2.0 to v4.3.0:
>
> Andreas Schuh (1):
> DOC: Modify BSplineDeformableTransform comments.
>
> Andriy Kot (1):
> ENH: Main filter for A2D2 PBNRR.
>
> Arnaud Gelas (10):
> PERF: couple of performance improvements useful for mesh processing
> PERF: Minor performance improvement in KernelTransform
> BUG: Fix errors on MS Visual
> COMP: missing includes in itkVectorImageToImageMetricTraitsv4.h
> ENH: Add tests for iterator indices
> COMP: fix doxgen warnings
> COMP: fix warning about uninitialized value
> COMP: Fix compilation error (missing include).
> COMP: fix clang warning about unused parameter
> STYLE: Make CopyMeshToMesh a function just like the other Copy
> Container ones.
>
> Baohua Wu (2):
> BUG: fixed a few bugs related to GPU Demons
> ENH: added suport for buffered region in GPU image
>
> Bill Lorensen (11):
> COMP: Macro definition of None in X11 breaks enum
> BUG: ThirdParty should not depend on ITK
> ENH: Utility to find modules needed by an ITK app
> COMP: Incorrect test signature
> BUG: GDCMImageIO ignores ImagePositionPatient
> STYLE: Fix according to KWstyle
> BUG: DCMTKImageIOFactory has wrong class name
> COMP: Remove DCMTK from default modules
> COMP: add set methods for member variables where missing.
> BUG: Cannot read a 2 channel (gray, alpha) png file correctly
> COMP: Revert recent change to iterator that fails to compile
>
> Brad King (11):
> MetaIO: Avoid NULL dereference in MetaOutput::GetUsername
> KWSys: Fix SystemInformation declaration order
> ENH: Allow ITK modules to export custom information
> ENH: ExternalData: Fix typo in unknown action error message
> COMP: Make module header tests depend on module libraries
> COMP: Make module header tests depend on module libraries
> STYLE: Replace write_file() with file(WRITE) and file(APPEND)
> STYLE: Replace make_directory() with file(MAKE_DIRECTORY)
> STYLE: Replace install_(files|programs|targets) with install command
> STYLE: Replace remove() with list(REMOVE_ITEM)
> STYLE: Remove unsed vxl source directory
>
> Bradley Lowekamp (46):
> COMP: fixing error when instatiated with image of double
> PERF: remove per sample allocation, use per-thread structure
> BUG: prevent static initialization fiasco during factory registration
> PERF: Avoid memcpy call per component for Nift
> BUG: Correct for divide by zero when first bin has zero frequency
> PERF: add alignment data attribute to per-thread structure
> BUG: fix writing a corrupt meta image header from unknow metadata
> PERF: remove per sample allocation, use per-thread structure
> BUG: prevent static initialization fiasco during factory registration
> BUG: fix writing a corrupt meta image header from unknow metadata
> BUG: fix for overlay functor for llvm optimization bug
> ENH: adding support for VectorImage output in LabelMapCountorOverlay
> BUG: Fix segfault when no inital means were set.
> BUG: verify sigma is a positive number for Recursive Gaussian
> COMP: fix exception specification warning
> BUG: Restore automatic loading of factories in ITK_AUTOLOAD_PATH
> BUG: Avoid warning by using ProcessObject::GetInput method
> COMP: add missing functional header for logic ops tests
> BUG: The incorrect auto_load path was specified in itkIOPluginTest
> BUG: Use path to configure NrrdIO.h for installation
> PERF: Replacing iterator copy with optimized ImageAgotithm::Copy
> BUG: Prevent segfault when logger not set for PatchedBasedDenoising
> BUG: Update uncrustify configuration with space before access spec
> ENH: Enabling support for system lib versions prior to TIFF 4.0.0
> STYLE: Fixed numerous style error in PatchBased denoising
> BUG: Internal factory must use RegisterFactoryInternal method
> BUG: Fix Wrapping FFTWComplexToComplex
> ENH: updating to libtif 4.0.3
> BUG: Fix compilation ofswig external project
> BUG: Fix segfault from integer overflow in NIFTI reader
> BUG: disable wrapping of Toboggan filter for win 64
> ENH: adding support for VectorImage to JoinSeries filter
> ENH: support for VectorImage output to GradientRecursiveGaussian
> BUG: Correcting wrapping CMakeList.txt for DCMTK
> ENH: Improve MRCImageIO support for VectorImages
> COMP: Adding Valgrind suppression for NRRD IO on RH6
> ENH: Convert the Modulus filter to standard binary filter
> BUG: unset environmental default number of threads
> COMP: Adding valgrid suppression file for RHEL6
> BUG: Remove NiftiBigIO Test add MEMORY_SIZE test lock
> COMP: Fix WrapITK warning in DCMTK
> BUG: Append FFTW dirs to ITK's in ITKConfig
> COMP: Fix link error with visibility-inlines-hidden
> BUG: ShrinkImageFilter marked as modified in SetShrinkFactor
> BUG: Prevent modulus by zero is Modulus functor
> BUG: Enable the rehash method to re-register internal factories.
>
> Brian Avants (2):
> COMP: The + operation was not registering on Win7-vc10-vce32rel
> BUG: InputImageDimension should be OutputImageDimension
>
> Brian Helba (1):
> ENH: Update Remote/LesionSizingToolkit to newer commit
>
> Cory Quammen (4):
> BUG: Added missing include
> BUG: Propagate the spacing and meta-data in FFTWForwardFFT fitler.
> BUG: Added locking around fftw_destroy_plan
> DOC: Modify PasteImageFilter comments.
>
> David Doria (6):
> ENH: Add a SetRegion function to all ImageIterators.
> ENH: Add SetRegion function to NeighborhoodIterators.
> ENH: Allow the ShapedNeighborhoodIterators to use SetRegion.
> COMP: Replace stdlib.h with cstdlib.
> STYLE: Replace dash character in comment.
> STYLE: Replace C Library headers with c[headername]
>
> Dirk Padfield (3):
> PERF: Faster distance computation and fixed reflective iterator bug
> BUG: Corrected bug in SignedDanielssonDistanceMap and added
> regression tests.
> ENH: Templated MaskedFFTNormalizedCorr. over MaskType (#ITK-2940)
>
> Fotis Drakopoulos (1):
> BUG: Variance and structure tensor fix
>
> Gang Song (2):
> ENH: Add sparse threader for ANTS CC metric
> COMP: Remove deque header from metric class header
>
> Gordon Kindlmann (5):
> ENH: updating ITK's NrrdIO to reflect state of Teem's NrrdIO, take 4
> ENH: re-enabling warnings for NrrdIO
> ENH: warning about idxIn in reorder.c; no trailing whitespace
> ENH: still trying to quash warning about idxIn in reorder.c
> BUG: tracking changes (hopefully the last) in Teem prior to its
> 1.11 release
>
> Hans Johnson (35):
> ENH: Bump version to 4.3.0
> BUG: Test harness gave false positives
> BUG: Remove duplicate file in wrong place
> ENH: Allow removal of all Deprecated code
> COMP: Remove unnecessary const_cast.
> STYLE: Remove all references to StartRegistation
> BUG: Array overrun in LaplacianRecursiveGaussian
> COMP: Revert use of itkLegacyMacro
> ENH: Improve testing of GetInverse
> PERF: Const correct optimize initialization.
> COMP: Fix data type for consistency
> ENH: Imaging data should not be in git
> BUG: Missing DisplacementFieldTransform IO
> COMP: Fix warning for propogating success status
> BUG: Make IsTransformQueueEmpty const
> STYLE: Convert CMake-language commands lower case
> STYLE: Remove CMake-language block-end arguments
> BUG: Reading composite transform error
> ENH: Update compiler fixes for fftw external
> BUG: Test harness gave false positives
> BUG: Remove duplicate file in wrong place
> COMP: Remove unnecessary const_cast.
> COMP: Unused variable warning with FFTW options
> ENH: Test always uncondintionally returned true
> STYLE: Add more files that need to be ignored
> STYLE: Fix typo in comment.
> PERF: Avoid costly redundant computations.
> BUG: Removed too stringent ConceptChecking
> PERF: Remove unnecessary function GetImageDimension
> STYLE: Remove dead code ITK_TEMPLATE_EXPLICIT
> STYLE: Made use of .hxx guards consistent
> DOC: Update space before access specification
> BUG: Allow backwards compatibilty for ITK_TEMPLATE_TXX
> STYLE: Make round consistent in ITK.
> BUG: Incorrect syntax for Intel optimize pragma
>
> Ho Cheung (4):
> COMP: Add "#include " to classes for VS2012
> PERF: Fix usage of ElementAt in PolyLineParametricPath to use
> const version
> BUG: Make LaplRecurGauss filter set the number of threads on the
> subfilters
> COMP: Fix regression of name mangling for libtiff
>
> ITK Migration V4 (3):
> DOC: Modify ComposeImageFilter comments.
> DOC: Modify VectorIndexSelectionCastImageFilter comments.
> DOC: Modify AnisotropicDiffusionFunction comments.
>
> Jean-Christophe Fillion-Robin (2):
> BUG: Prevent MetaIO vessel tube from getting stuck in while loop
> BUG: Add test for MetaIO vessel tube from getting stuck in while loop
>
> Jeffrey Duda (1):
> ENH: Updates for multivariate metrics
>
> Kent Williams (18):
> PERF: Pull expensive GetInput/GetOutput calls out of inner loops
> COMP: propogate compiler selection & flags to FFTW build
> STYLE: Remove superfluous static_cast
> PERF: Pull expensive GetInput/GetOutput calls out of inner loops
> STYLE: Refine usage of static_cast
> BUG: B.Lowenkamp's changes to detect empty fields in Meta files
> BUG: isblank is missing on Microsoft Visual Studio.
> COMP: propogate compiler selection & flags to FFTW build
> BUG: Added test to verify metadata gets copied on file write w/Nrrd
> BUG: Add regression test to try very long filename w/MetaIO
> ENH: Allow change of tolerance in ImageToImageFilter
> DOC: Document spacing/direction tolerance access methods.
> BUG: Orientation vector in FiniteCylinderFunction
> PERF: hoist computation of norm outside Evaluate method.
> ENH: Add DCMTKImageIO to ITK
> BUG: Origin was lost reading HDF5 format images.
> COMP: add new gdcm test for SeriesReader + MetaDataDictionary
> COMP: add set methods for member variables where missing.
>
> Kris Zygmunt (5):
> PERF: Optimize patch-based denoiser tensor computations
> BUG: GPU tests sometimes fails
> BUG: SymmetricEigenAnalysis OrderByMagnitude bug
> PERF: speed up patch-based denoising tests
> BUG: Denoising 3D patch weights incorrect
>
> Marius Staring (1):
> ENH: Creating a typedef for the modified time
>
> Matthew McCormick (64):
> ENH: Allow custom name for ProcessObject Primary Input/Output.
> DOC: Clarify ProcessObject NumberOfRequiredInputs.
> STYLE: Fix style in itkBlockMatchingImageFilterTest.
> BUG: Fix BlockMatchingImageFilter for pipeline updating.
> DOC: Use one column in the Doxygen alphabetical class index.
> BUG: Fix GCC_XML and SWIG ExternalProject dependencies.
> BUG: Fix multi-object MetaIO reading for ASCII MetaVesselTube.
> STYLE: Improve readability and debugability in MetaScene.
> BUG: Fix multi-object MetaIO reading for ASCII MetaVesselTube.
> COMP: Fix QuadEdgeMesh doxygen warnings.
> ENH: Wrap new exponential Transform classes.
> STYLE: Use typedefs in TreeNode.
> STYLE: Use more descriptive names in itkSceneSpatialObject.hxx.
> STYLE: Cleanup WrapITK comments.
> BUG: Fix WrapITK GCCXML ExternalProject dependency.
> COMP: Make sure the VC script gets executed after gccxml installation.
> ENH: Use tarball for gccxml ExternalProject build.
> PERF: Use GetPrimaryOutput in ImageSource GetOutput.
> COMP: Add missing deque header for ANTSNeighborhoodCorrelation metric.
> BUG: Fix WrapITK GCCXML ExternalProject dependency.
> COMP: Make sure the VC script gets executed after gccxml installation.
> BUG: Fix multi-object MetaIO reading for ASCII MetaVesselTube.
> ENH: Bump release branch CMakeLists.txt version to 4.2.1.
> DOC: Update Doxygen config's for 1.8.2.
> DOC: Remove out-of-date files in Documentation/
> STYLE: Use EXIT_SUCCESS in itkQuadEdgeMeshPolygonCellTest.
> DOC: Improve Doxygen HTML layout.
> STYLE: Improve style in itkGaussianImageSourceTest.
> COMP: GaussianImageSource unsigned comparison always false.
> BUG: Fix VelocityFieldTransform classes wrapping.
> ENH: Support Vector scalar product with CovariantVector.
> MetaIO: Remove the executable bit from metaFEMObject.{h,cxx}.
> MetaIO: Fix invalid memory dereference with empty Meta field.
> COMP: Fix invalid unsigned comparison with 1D instantiation.
> ENH: Archive testing data in Midas.
> BUG: FixedArray wrapping for 4D wrapping.
> ENH: Add operator=( FloatType & rhs ) to CompensatedSummation.
> BUG: Improve robustness of RayCastInterpolateImageFunction.
> BUG: VTKPolyDataMeshIO for Meshes with Tensor Pixels. #2961
> COMP: Do not wrap WatershedImageFilter on Windows.
> BUG: Set the third-party libtiff VERSION to the correct value.
> COMP: Build with ITK_USE_SYSTEM_TIFF. #2967
> COMP: Fix wrapping of itkNarrowBandCurvesLevelSetImageFilter. #2970.
> COMP: Do not run itkSampleToHistogramFilterTest4 with VC.
> COMP: Fix 1D wrapping of itkImageToVTKImageFilter.
> MetaIO: Prevent vessel tube from getting stuck in while loop
> MetaIO: Fix error in metaVesselTube ASCII reader.
> COMP: Disable DCMTK for MinGW.
> COMP: Ignore DCMTK build warnings.
> BUG: Use HTTP protocol by default for Git pull URLs.
> COMP: Better identification of MSVC90.
> STYLE: Fix style of BorderQuadEdgeMeshFilter.
> STYLE: Fix style of CleanQuadEdgeMeshFilter.
> STYLE: Rename itkMultiTransformBase to itkMultiTransform.
> COMP: Wrap MultiTransform.
> STYLE: Fix style in MultiTransform.
> COMP: Disabling the VideoStreamTest.
> COMP: Suppress fftw ExternalProject warnings.
> COMP: LabelImageInterpolateImageFunctionTest type conversion.
> COMP: Add include directory for ITK_USE_SYSTEM_HDF5.
> COMP: itkLabelImageGaussianInterpolateImageFunctionTest signed unsigned.
> COMP: Fix Doxygen warnings.
> COMP: Ignore libtool FFTW warnings with quote.
> COMP: Fix HDF5IO with ITK_USE_64BITS_IDS on Windows.
>
> Matthias Seise (1):
> COMP: Compile wrapITK for python2.7,64bit on windows
>
> Michael Stauffer (6):
> PERF: Optimize GetValue in v4 image metrics.
> ENH: Add "WithOnlyIndex" iterators.
> PERF: improve speed of ImageToImageMetricv4 and derived metrics
> ENH: Add parameter weighting option to Optimizersv4
> ENH: Add MultiTransformBase
> DOC: Fix to ObjectToObjectOptimizerBase documentation
>
> Nick Tustison (20):
> ENH: Expanding HasLocalSupport to transform categories.
> ENH: Adding ability to prepend transform queue.
> ENH: Adding labeled point set metric.
> ENH: Add GetTransformCategory() to translation transform.
> ENH: Adding exponential transforms.
> ENH: Adding common transforms to be registered.
> BUG: Voxel size scaling needed
> ENH: Enable inverse for exponential transforms.
> ENH: BSpline automated scales estimation.
> BUG: Fix resampling of constant velocity field.
> BUG: Uninitialized variable.
> ENH: Reorganization of vel. field transforms.
> BUG: Control point grid origin wasn't set correctly.
> ENH: Adding option to permit voxel-based smoothing.
> ENH: Adding Multiple label STAPLE.
> BUG: Disp. field xfrm inverse not set correctly.
> ENH: Multiple metrics in registration methods.
> BUG: Incomplete dynamic casting.
> BUG: Correcting valgrind error.
> BUG: Set correct images in update field.
>
> Paul Novotny (1):
> COMP: Fix Spatial Object Test Segfaults
>
> Richard Beare (1):
> ENH: Functors for logic operations
>
> Willi Huber (2):
> COMP: WrapITK generates non-unique typedefs in FFT submodule
> COMP: Fix the wrapping for some modules
>
> Xiaoxiao Liu (3):
> ENH: Update LSTK version.
> BUG: Update LSTK version to sync with VTK 6.0.
> BUG: Fix ffmpeg VideoStream failing tests.
>
>
> Changes from v4.3.0 to v4.3.1:
>
> Bill Lorensen (1):
> COMP: Fix compile error in PhilipsRECImageIO
>
> Hans Johnson (1):
> COMP: Remove unnecessary BORLAND code
>
> Matthew McCormick (4):
> COMP: Fix HDF5 unused function for long long on Unix.
> BUG: Remove unused metric test content link.
> COMP: Add DLL to PATH for Python tests on Visual Studio.
> ENH: Bump CMakeLists.txt ITK version to 4.3.1.
>
>
>
> Enjoy ITK!
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