[Insight-users] [ANNOUNCEMENT] ITK 4.3 has been released!
Matt McCormick
matt.mccormick at kitware.com
Thu Jan 10 10:28:52 EST 2013
Hi Ale,
Which patch are you referring to?
Thanks,
Matt
On Thu, Jan 10, 2013 at 7:56 AM, Alessandro <notinmyhead at gmail.com> wrote:
> Hi,
>
> I'm wondering if there is a reason to do not correct the know bug in GDCM SeriesHelper.
>
> Thanks,
> Ale
>
> Il giorno 26/dic/2012, alle ore 21.43, Matt McCormick ha scritto:
>
>> The Insight Software Consortium is happy to announce the release of ITK 4.3!
>>
>> The 4.3 release is a major milestone that marks the hard work of many
>> outstanding community members.
>>
>>
>> Links to the Sourceforge.net tarballs can be found on the download page:
>>
>> http://www.itk.org/ITK/resources/software.html
>>
>>
>> InsightToolkit 4.3.1 tarballs were created after a bug in the
>> PhilipsRecImageIO was discovered immediately after the 4.3.0 tag was
>> pushed.
>>
>>
>> We are excited to announce that experimental DICOM image reading is
>> available via the DCMTK library as a backend in addition to the GDCM
>> library. By default, DCMTK ImageIO support is not enabled. To try
>> DCMTK ImageIO support, turn the CMake option Module_ITKIODCMTK ON.
>> For Unix platforms, the supporting DCMTK library will automatically be
>> built as a CMake ExternalProject. On Windows, the DCMTK library must
>> be built independently of the ITK build system. Then, specify the
>> location to the external build after setting the CMake option
>> ITK_USE_SYSTEM_DCMTK ON.
>>
>> WrapITK has undergone extensive improvements and bug fixes. The status
>> of WrapITK on various platforms can be found on the following Wiki
>> page:
>>
>> http://www.itk.org/Wiki/ITK/WrapITK_Status
>>
>> A number of registration-related feature enhancements were added. The
>> image registration methods have been updated to accommodate multiple
>> image metrics within a single optimization scheme. This permits, for
>> example, registration of a T1/T2 fixed image pair with a T1/T2 moving
>> image pair using a single metric for both T1 and T2 gradients or even
>> using two different metrics. New exponential transforms are available
>> along with automated B-Spline transform scale estimation. A new
>> physics-based non-rigid registration class is also available.
>>
>> Updated third-party library versions include:
>> * NrrdIO from Teem 1.11,
>> * libtiff 4.03,
>> * FFTW 3.3.2
>>
>> A large number of important bugs were crushed, including fixes to the
>> ObjectFactoryBase, Patch-Based Denoising improvements, support for a
>> system libtiff, mesh processing, and FFTW use.
>>
>> Support for itk::VectorImage’s was added to many algorithms, and a
>> single templated Adaptor class can now be applied without modification
>> to both itk::VectorImage’s and itk::Image’s of itk::Vector’s,
>> itk::RGBPixel’s, etc.
>>
>> An extensive amount of code cruft was removed and coding style was
>> made more consistent; ITK gets more stylish and classy with every
>> release!
>>
>> Performance optimizations were achieved by removing GetInput/GetOutput
>> calls within filter inner loops, improving memory alignment, memory
>> access pattern optimizations, and parallelization through threading.
>>
>> NOTE: As previously scheduled, Visual Studio 2005 will no longer be
>> supported after this release.
>>
>> Changes from v4.2.0 to v4.3.0:
>>
>> Andreas Schuh (1):
>> DOC: Modify BSplineDeformableTransform comments.
>>
>> Andriy Kot (1):
>> ENH: Main filter for A2D2 PBNRR.
>>
>> Arnaud Gelas (10):
>> PERF: couple of performance improvements useful for mesh processing
>> PERF: Minor performance improvement in KernelTransform
>> BUG: Fix errors on MS Visual
>> COMP: missing includes in itkVectorImageToImageMetricTraitsv4.h
>> ENH: Add tests for iterator indices
>> COMP: fix doxgen warnings
>> COMP: fix warning about uninitialized value
>> COMP: Fix compilation error (missing include).
>> COMP: fix clang warning about unused parameter
>> STYLE: Make CopyMeshToMesh a function just like the other Copy
>> Container ones.
>>
>> Baohua Wu (2):
>> BUG: fixed a few bugs related to GPU Demons
>> ENH: added suport for buffered region in GPU image
>>
>> Bill Lorensen (11):
>> COMP: Macro definition of None in X11 breaks enum
>> BUG: ThirdParty should not depend on ITK
>> ENH: Utility to find modules needed by an ITK app
>> COMP: Incorrect test signature
>> BUG: GDCMImageIO ignores ImagePositionPatient
>> STYLE: Fix according to KWstyle
>> BUG: DCMTKImageIOFactory has wrong class name
>> COMP: Remove DCMTK from default modules
>> COMP: add set methods for member variables where missing.
>> BUG: Cannot read a 2 channel (gray, alpha) png file correctly
>> COMP: Revert recent change to iterator that fails to compile
>>
>> Brad King (11):
>> MetaIO: Avoid NULL dereference in MetaOutput::GetUsername
>> KWSys: Fix SystemInformation declaration order
>> ENH: Allow ITK modules to export custom information
>> ENH: ExternalData: Fix typo in unknown action error message
>> COMP: Make module header tests depend on module libraries
>> COMP: Make module header tests depend on module libraries
>> STYLE: Replace write_file() with file(WRITE) and file(APPEND)
>> STYLE: Replace make_directory() with file(MAKE_DIRECTORY)
>> STYLE: Replace install_(files|programs|targets) with install command
>> STYLE: Replace remove() with list(REMOVE_ITEM)
>> STYLE: Remove unsed vxl source directory
>>
>> Bradley Lowekamp (46):
>> COMP: fixing error when instatiated with image of double
>> PERF: remove per sample allocation, use per-thread structure
>> BUG: prevent static initialization fiasco during factory registration
>> PERF: Avoid memcpy call per component for Nift
>> BUG: Correct for divide by zero when first bin has zero frequency
>> PERF: add alignment data attribute to per-thread structure
>> BUG: fix writing a corrupt meta image header from unknow metadata
>> PERF: remove per sample allocation, use per-thread structure
>> BUG: prevent static initialization fiasco during factory registration
>> BUG: fix writing a corrupt meta image header from unknow metadata
>> BUG: fix for overlay functor for llvm optimization bug
>> ENH: adding support for VectorImage output in LabelMapCountorOverlay
>> BUG: Fix segfault when no inital means were set.
>> BUG: verify sigma is a positive number for Recursive Gaussian
>> COMP: fix exception specification warning
>> BUG: Restore automatic loading of factories in ITK_AUTOLOAD_PATH
>> BUG: Avoid warning by using ProcessObject::GetInput method
>> COMP: add missing functional header for logic ops tests
>> BUG: The incorrect auto_load path was specified in itkIOPluginTest
>> BUG: Use path to configure NrrdIO.h for installation
>> PERF: Replacing iterator copy with optimized ImageAgotithm::Copy
>> BUG: Prevent segfault when logger not set for PatchedBasedDenoising
>> BUG: Update uncrustify configuration with space before access spec
>> ENH: Enabling support for system lib versions prior to TIFF 4.0.0
>> STYLE: Fixed numerous style error in PatchBased denoising
>> BUG: Internal factory must use RegisterFactoryInternal method
>> BUG: Fix Wrapping FFTWComplexToComplex
>> ENH: updating to libtif 4.0.3
>> BUG: Fix compilation ofswig external project
>> BUG: Fix segfault from integer overflow in NIFTI reader
>> BUG: disable wrapping of Toboggan filter for win 64
>> ENH: adding support for VectorImage to JoinSeries filter
>> ENH: support for VectorImage output to GradientRecursiveGaussian
>> BUG: Correcting wrapping CMakeList.txt for DCMTK
>> ENH: Improve MRCImageIO support for VectorImages
>> COMP: Adding Valgrind suppression for NRRD IO on RH6
>> ENH: Convert the Modulus filter to standard binary filter
>> BUG: unset environmental default number of threads
>> COMP: Adding valgrid suppression file for RHEL6
>> BUG: Remove NiftiBigIO Test add MEMORY_SIZE test lock
>> COMP: Fix WrapITK warning in DCMTK
>> BUG: Append FFTW dirs to ITK's in ITKConfig
>> COMP: Fix link error with visibility-inlines-hidden
>> BUG: ShrinkImageFilter marked as modified in SetShrinkFactor
>> BUG: Prevent modulus by zero is Modulus functor
>> BUG: Enable the rehash method to re-register internal factories.
>>
>> Brian Avants (2):
>> COMP: The + operation was not registering on Win7-vc10-vce32rel
>> BUG: InputImageDimension should be OutputImageDimension
>>
>> Brian Helba (1):
>> ENH: Update Remote/LesionSizingToolkit to newer commit
>>
>> Cory Quammen (4):
>> BUG: Added missing include
>> BUG: Propagate the spacing and meta-data in FFTWForwardFFT fitler.
>> BUG: Added locking around fftw_destroy_plan
>> DOC: Modify PasteImageFilter comments.
>>
>> David Doria (6):
>> ENH: Add a SetRegion function to all ImageIterators.
>> ENH: Add SetRegion function to NeighborhoodIterators.
>> ENH: Allow the ShapedNeighborhoodIterators to use SetRegion.
>> COMP: Replace stdlib.h with cstdlib.
>> STYLE: Replace dash character in comment.
>> STYLE: Replace C Library headers with c[headername]
>>
>> Dirk Padfield (3):
>> PERF: Faster distance computation and fixed reflective iterator bug
>> BUG: Corrected bug in SignedDanielssonDistanceMap and added
>> regression tests.
>> ENH: Templated MaskedFFTNormalizedCorr. over MaskType (#ITK-2940)
>>
>> Fotis Drakopoulos (1):
>> BUG: Variance and structure tensor fix
>>
>> Gang Song (2):
>> ENH: Add sparse threader for ANTS CC metric
>> COMP: Remove deque header from metric class header
>>
>> Gordon Kindlmann (5):
>> ENH: updating ITK's NrrdIO to reflect state of Teem's NrrdIO, take 4
>> ENH: re-enabling warnings for NrrdIO
>> ENH: warning about idxIn in reorder.c; no trailing whitespace
>> ENH: still trying to quash warning about idxIn in reorder.c
>> BUG: tracking changes (hopefully the last) in Teem prior to its
>> 1.11 release
>>
>> Hans Johnson (35):
>> ENH: Bump version to 4.3.0
>> BUG: Test harness gave false positives
>> BUG: Remove duplicate file in wrong place
>> ENH: Allow removal of all Deprecated code
>> COMP: Remove unnecessary const_cast.
>> STYLE: Remove all references to StartRegistation
>> BUG: Array overrun in LaplacianRecursiveGaussian
>> COMP: Revert use of itkLegacyMacro
>> ENH: Improve testing of GetInverse
>> PERF: Const correct optimize initialization.
>> COMP: Fix data type for consistency
>> ENH: Imaging data should not be in git
>> BUG: Missing DisplacementFieldTransform IO
>> COMP: Fix warning for propogating success status
>> BUG: Make IsTransformQueueEmpty const
>> STYLE: Convert CMake-language commands lower case
>> STYLE: Remove CMake-language block-end arguments
>> BUG: Reading composite transform error
>> ENH: Update compiler fixes for fftw external
>> BUG: Test harness gave false positives
>> BUG: Remove duplicate file in wrong place
>> COMP: Remove unnecessary const_cast.
>> COMP: Unused variable warning with FFTW options
>> ENH: Test always uncondintionally returned true
>> STYLE: Add more files that need to be ignored
>> STYLE: Fix typo in comment.
>> PERF: Avoid costly redundant computations.
>> BUG: Removed too stringent ConceptChecking
>> PERF: Remove unnecessary function GetImageDimension
>> STYLE: Remove dead code ITK_TEMPLATE_EXPLICIT
>> STYLE: Made use of .hxx guards consistent
>> DOC: Update space before access specification
>> BUG: Allow backwards compatibilty for ITK_TEMPLATE_TXX
>> STYLE: Make round consistent in ITK.
>> BUG: Incorrect syntax for Intel optimize pragma
>>
>> Ho Cheung (4):
>> COMP: Add "#include " to classes for VS2012
>> PERF: Fix usage of ElementAt in PolyLineParametricPath to use
>> const version
>> BUG: Make LaplRecurGauss filter set the number of threads on the
>> subfilters
>> COMP: Fix regression of name mangling for libtiff
>>
>> ITK Migration V4 (3):
>> DOC: Modify ComposeImageFilter comments.
>> DOC: Modify VectorIndexSelectionCastImageFilter comments.
>> DOC: Modify AnisotropicDiffusionFunction comments.
>>
>> Jean-Christophe Fillion-Robin (2):
>> BUG: Prevent MetaIO vessel tube from getting stuck in while loop
>> BUG: Add test for MetaIO vessel tube from getting stuck in while loop
>>
>> Jeffrey Duda (1):
>> ENH: Updates for multivariate metrics
>>
>> Kent Williams (18):
>> PERF: Pull expensive GetInput/GetOutput calls out of inner loops
>> COMP: propogate compiler selection & flags to FFTW build
>> STYLE: Remove superfluous static_cast
>> PERF: Pull expensive GetInput/GetOutput calls out of inner loops
>> STYLE: Refine usage of static_cast
>> BUG: B.Lowenkamp's changes to detect empty fields in Meta files
>> BUG: isblank is missing on Microsoft Visual Studio.
>> COMP: propogate compiler selection & flags to FFTW build
>> BUG: Added test to verify metadata gets copied on file write w/Nrrd
>> BUG: Add regression test to try very long filename w/MetaIO
>> ENH: Allow change of tolerance in ImageToImageFilter
>> DOC: Document spacing/direction tolerance access methods.
>> BUG: Orientation vector in FiniteCylinderFunction
>> PERF: hoist computation of norm outside Evaluate method.
>> ENH: Add DCMTKImageIO to ITK
>> BUG: Origin was lost reading HDF5 format images.
>> COMP: add new gdcm test for SeriesReader + MetaDataDictionary
>> COMP: add set methods for member variables where missing.
>>
>> Kris Zygmunt (5):
>> PERF: Optimize patch-based denoiser tensor computations
>> BUG: GPU tests sometimes fails
>> BUG: SymmetricEigenAnalysis OrderByMagnitude bug
>> PERF: speed up patch-based denoising tests
>> BUG: Denoising 3D patch weights incorrect
>>
>> Marius Staring (1):
>> ENH: Creating a typedef for the modified time
>>
>> Matthew McCormick (64):
>> ENH: Allow custom name for ProcessObject Primary Input/Output.
>> DOC: Clarify ProcessObject NumberOfRequiredInputs.
>> STYLE: Fix style in itkBlockMatchingImageFilterTest.
>> BUG: Fix BlockMatchingImageFilter for pipeline updating.
>> DOC: Use one column in the Doxygen alphabetical class index.
>> BUG: Fix GCC_XML and SWIG ExternalProject dependencies.
>> BUG: Fix multi-object MetaIO reading for ASCII MetaVesselTube.
>> STYLE: Improve readability and debugability in MetaScene.
>> BUG: Fix multi-object MetaIO reading for ASCII MetaVesselTube.
>> COMP: Fix QuadEdgeMesh doxygen warnings.
>> ENH: Wrap new exponential Transform classes.
>> STYLE: Use typedefs in TreeNode.
>> STYLE: Use more descriptive names in itkSceneSpatialObject.hxx.
>> STYLE: Cleanup WrapITK comments.
>> BUG: Fix WrapITK GCCXML ExternalProject dependency.
>> COMP: Make sure the VC script gets executed after gccxml installation.
>> ENH: Use tarball for gccxml ExternalProject build.
>> PERF: Use GetPrimaryOutput in ImageSource GetOutput.
>> COMP: Add missing deque header for ANTSNeighborhoodCorrelation metric.
>> BUG: Fix WrapITK GCCXML ExternalProject dependency.
>> COMP: Make sure the VC script gets executed after gccxml installation.
>> BUG: Fix multi-object MetaIO reading for ASCII MetaVesselTube.
>> ENH: Bump release branch CMakeLists.txt version to 4.2.1.
>> DOC: Update Doxygen config's for 1.8.2.
>> DOC: Remove out-of-date files in Documentation/
>> STYLE: Use EXIT_SUCCESS in itkQuadEdgeMeshPolygonCellTest.
>> DOC: Improve Doxygen HTML layout.
>> STYLE: Improve style in itkGaussianImageSourceTest.
>> COMP: GaussianImageSource unsigned comparison always false.
>> BUG: Fix VelocityFieldTransform classes wrapping.
>> ENH: Support Vector scalar product with CovariantVector.
>> MetaIO: Remove the executable bit from metaFEMObject.{h,cxx}.
>> MetaIO: Fix invalid memory dereference with empty Meta field.
>> COMP: Fix invalid unsigned comparison with 1D instantiation.
>> ENH: Archive testing data in Midas.
>> BUG: FixedArray wrapping for 4D wrapping.
>> ENH: Add operator=( FloatType & rhs ) to CompensatedSummation.
>> BUG: Improve robustness of RayCastInterpolateImageFunction.
>> BUG: VTKPolyDataMeshIO for Meshes with Tensor Pixels. #2961
>> COMP: Do not wrap WatershedImageFilter on Windows.
>> BUG: Set the third-party libtiff VERSION to the correct value.
>> COMP: Build with ITK_USE_SYSTEM_TIFF. #2967
>> COMP: Fix wrapping of itkNarrowBandCurvesLevelSetImageFilter. #2970.
>> COMP: Do not run itkSampleToHistogramFilterTest4 with VC.
>> COMP: Fix 1D wrapping of itkImageToVTKImageFilter.
>> MetaIO: Prevent vessel tube from getting stuck in while loop
>> MetaIO: Fix error in metaVesselTube ASCII reader.
>> COMP: Disable DCMTK for MinGW.
>> COMP: Ignore DCMTK build warnings.
>> BUG: Use HTTP protocol by default for Git pull URLs.
>> COMP: Better identification of MSVC90.
>> STYLE: Fix style of BorderQuadEdgeMeshFilter.
>> STYLE: Fix style of CleanQuadEdgeMeshFilter.
>> STYLE: Rename itkMultiTransformBase to itkMultiTransform.
>> COMP: Wrap MultiTransform.
>> STYLE: Fix style in MultiTransform.
>> COMP: Disabling the VideoStreamTest.
>> COMP: Suppress fftw ExternalProject warnings.
>> COMP: LabelImageInterpolateImageFunctionTest type conversion.
>> COMP: Add include directory for ITK_USE_SYSTEM_HDF5.
>> COMP: itkLabelImageGaussianInterpolateImageFunctionTest signed unsigned.
>> COMP: Fix Doxygen warnings.
>> COMP: Ignore libtool FFTW warnings with quote.
>> COMP: Fix HDF5IO with ITK_USE_64BITS_IDS on Windows.
>>
>> Matthias Seise (1):
>> COMP: Compile wrapITK for python2.7,64bit on windows
>>
>> Michael Stauffer (6):
>> PERF: Optimize GetValue in v4 image metrics.
>> ENH: Add "WithOnlyIndex" iterators.
>> PERF: improve speed of ImageToImageMetricv4 and derived metrics
>> ENH: Add parameter weighting option to Optimizersv4
>> ENH: Add MultiTransformBase
>> DOC: Fix to ObjectToObjectOptimizerBase documentation
>>
>> Nick Tustison (20):
>> ENH: Expanding HasLocalSupport to transform categories.
>> ENH: Adding ability to prepend transform queue.
>> ENH: Adding labeled point set metric.
>> ENH: Add GetTransformCategory() to translation transform.
>> ENH: Adding exponential transforms.
>> ENH: Adding common transforms to be registered.
>> BUG: Voxel size scaling needed
>> ENH: Enable inverse for exponential transforms.
>> ENH: BSpline automated scales estimation.
>> BUG: Fix resampling of constant velocity field.
>> BUG: Uninitialized variable.
>> ENH: Reorganization of vel. field transforms.
>> BUG: Control point grid origin wasn't set correctly.
>> ENH: Adding option to permit voxel-based smoothing.
>> ENH: Adding Multiple label STAPLE.
>> BUG: Disp. field xfrm inverse not set correctly.
>> ENH: Multiple metrics in registration methods.
>> BUG: Incomplete dynamic casting.
>> BUG: Correcting valgrind error.
>> BUG: Set correct images in update field.
>>
>> Paul Novotny (1):
>> COMP: Fix Spatial Object Test Segfaults
>>
>> Richard Beare (1):
>> ENH: Functors for logic operations
>>
>> Willi Huber (2):
>> COMP: WrapITK generates non-unique typedefs in FFT submodule
>> COMP: Fix the wrapping for some modules
>>
>> Xiaoxiao Liu (3):
>> ENH: Update LSTK version.
>> BUG: Update LSTK version to sync with VTK 6.0.
>> BUG: Fix ffmpeg VideoStream failing tests.
>>
>>
>> Changes from v4.3.0 to v4.3.1:
>>
>> Bill Lorensen (1):
>> COMP: Fix compile error in PhilipsRECImageIO
>>
>> Hans Johnson (1):
>> COMP: Remove unnecessary BORLAND code
>>
>> Matthew McCormick (4):
>> COMP: Fix HDF5 unused function for long long on Unix.
>> BUG: Remove unused metric test content link.
>> COMP: Add DLL to PATH for Python tests on Visual Studio.
>> ENH: Bump CMakeLists.txt ITK version to 4.3.1.
>>
>>
>>
>> Enjoy ITK!
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