[Insight-users] Reading DICOMs using Python wrapping

[Willi Huber]

Is there a way to transfer SimpleITK images to ITK and vice versa?



>________________________________
> Von: Willi Huber <surfersparadise85-itk at yahoo.com>
>An: Bradley Lowekamp <blowekamp at mail.nih.gov> 
>CC: "insight-users at itk.org" <insight-users at itk.org> 
>Gesendet: 1:57 Donnerstag, 10.Januar 2013
>Betreff: Re: [Insight-users] Reading DICOMs using Python wrapping
> 
>
>Hello Brad,
>
>
>thanks for your fast reply. Yeah I didn't think about having enabled all pixel types during compilation. Sorry.
>
>
>I tried SimpleITK now with the drawback that I have to give a sorted list of files to the ImageSeriesReader. In other words I assume the volume is created as stack in the order of the files given.
>Unfortunately the public static functions GetGDCMSeriesIDs are not available in Python. Why is this?
>
>
>Cheers,
>Willi 
>
>
>
>>________________________________
>> Von: Bradley Lowekamp <blowekamp at mail.nih.gov>
>>An: Willi Huber <surfersparadise85-itk at yahoo.com> 
>>CC: "insight-users at itk.org" <insight-users at itk.org> 
>>Gesendet: 13:58 Dienstag, 8.Januar 2013
>>Betreff: Re: [Insight-users] Reading DICOMs using Python wrapping
>> 
>>
>>Hello,
>>
>>
>>You need to recompile you WrapITK to support the pixel types you need.
>>
>>
>>While you are waiting for that you should try a built distribution of SimpleITK 0.6rc1!
>>
>>
>>SimpleITK is compiled for just about all pixel types.
>>
>>
>>The ImageSeriesReader has a couple methods the get the GDCM series files names that can be feed into the reader to read.
>>
>>
>>SimpleITK also has the GetArrayFromImage function which convert the SimpleITK image into a numpy array. It should be easy to convert that into a VTK image, just a little bit of attention is going to be needed to get the meta-data converted correctly. We really should create a utility library to aid in this type of conversion.
>>
>>
>>Brad
>>
>>
>>On Jan 7, 2013, at 11:58 PM, Willi Huber <surfersparadise85-itk at yahoo.com> wrote:
>>
>>Hello all,
>>>
>>>
>>>I am using python(x,y) and I want to work on some dicom volumes in ITK and VTK.
>>>
>>>
>>>My idea was to use ITK for reading the data and if necessary transfer them to VTK using the glue. My problem now is that itk only supports itk.UC and/or itk.US as datatype for reading in python wrapped ITK which is not sufficient.
>>>Does it make sense to allow more datatypes for another users point of view. 
>>>If not it would be nice if someone could give me a hint how to easily transfer raw data to ITK using GDCM.
>>>
>>>
>>>Cheers,
>>>Willi_____________________________________
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>>
>>
>>
>_____________________________________
>Powered by www.kitware.com
>
>Visit other Kitware open-source projects at
>http://www.kitware.com/opensource/opensource.html
>
>Kitware offers ITK Training Courses, for more information visit:
>http://www.kitware.com/products/protraining.php
>
>Please keep messages on-topic and check the ITK FAQ at:
>http://www.itk.org/Wiki/ITK_FAQ
>
>Follow this link to subscribe/unsubscribe:
>http://www.itk.org/mailman/listinfo/insight-users
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>
>
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