[Insight-users] Reading DICOMs using Python wrapping

[Willi Huber]

Hello Brad,

thanks for your fast reply. Yeah I didn't think about having enabled all pixel types during compilation. Sorry.

I tried SimpleITK now with the drawback that I have to give a sorted list of files to the ImageSeriesReader. In other words I assume the volume is created as stack in the order of the files given.
Unfortunately the public static functions GetGDCMSeriesIDs are not available in Python. Why is this?

Cheers,
Willi 



>________________________________
> Von: Bradley Lowekamp <blowekamp at mail.nih.gov>
>An: Willi Huber <surfersparadise85-itk at yahoo.com> 
>CC: "insight-users at itk.org" <insight-users at itk.org> 
>Gesendet: 13:58 Dienstag, 8.Januar 2013
>Betreff: Re: [Insight-users] Reading DICOMs using Python wrapping
> 
>
>Hello,
>
>
>You need to recompile you WrapITK to support the pixel types you need.
>
>
>While you are waiting for that you should try a built distribution of SimpleITK 0.6rc1!
>
>
>SimpleITK is compiled for just about all pixel types.
>
>
>The ImageSeriesReader has a couple methods the get the GDCM series files names that can be feed into the reader to read.
>
>
>SimpleITK also has the GetArrayFromImage function which convert the SimpleITK image into a numpy array. It should be easy to convert that into a VTK image, just a little bit of attention is going to be needed to get the meta-data converted correctly. We really should create a utility library to aid in this type of conversion.
>
>
>Brad
>
>
>On Jan 7, 2013, at 11:58 PM, Willi Huber <surfersparadise85-itk at yahoo.com> wrote:
>
>Hello all,
>>
>>
>>I am using python(x,y) and I want to work on some dicom volumes in ITK and VTK.
>>
>>
>>My idea was to use ITK for reading the data and if necessary transfer them to VTK using the glue. My problem now is that itk only supports itk.UC and/or itk.US as datatype for reading in python wrapped ITK which is not sufficient.
>>Does it make sense to allow more datatypes for another users point of view. 
>>If not it would be nice if someone could give me a hint how to easily transfer raw data to ITK using GDCM.
>>
>>
>>Cheers,
>>Willi_____________________________________
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