[Insight-users] ITK image to Numpy matrix and viceversa

[Paolo Zaffino]

Dear Brad,
thanks for your answer but I'm not yet able to get working that module.
First I think that the command is git clone 
git://github.com/tobiasmaier/itkPyBuffer.git 
Modules/External/itkPyBuffer, right?
Anyway I didn't understand how compile it, if I have to compile it 
before ITK or if it will be compiled during the itk building.
The problem is that I don't see the option to enable itkPyBuffer in the 
cmake step for ITK.

Yes, I know of simpleITK, but in this case I need of ITK...anyway thanks 
for the advice.

Thanks a lot.
Paolo




Il 29/01/2013 15:20, Bradley Lowekamp ha scritto:
> Hello Paolo,
>
> I have used the the following external module for get numpy support 
> for WrapITK:
>
> https://github.com/tobiasmaier/itkPyBuffer
>
>
> From the root ITK source dir just clone the repo into the 
> Modules/External directory:
>
> git clone git://github.com/tobiasmaier/itkPyBuffer.git Modules/External/
>
> Rerun ccmake, and turn on this module. And recompile.
>
>
> While you are waiting you can check to see if SimpleITK has the 
> functionality you need.
> I'd like to point out that SimpleITK has built in support for numpy, 
> and has binary eggs available for download.
> http://www.itk.org/Wiki/ITK/Release_4/SimpleITK
>
> Brad
>
> On Jan 29, 2013, at 8:46 AM, Paolo Zaffino <p.zaffino at yahoo.it 
> <mailto:p.zaffino at yahoo.it>> wrote:
>
>> Dear ITK community,
>>
>> I compiled ITK 4.3.1 with the Python support and all went fine.
>> I am able to run ITK functions from Python, but I'm also interested 
>> in converting an ITK image into a Numpy matrix and viceversa.
>> How can I do this?
>>
>> Thank you very much.
>> Regards.
>> Paolo
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