[Insight-users] [ANNOUNCE] ITK 4.4.0 has been released!
Bill Lorensen
bill.lorensen at gmail.com
Wed Jul 10 14:35:50 EDT 2013
Have you ever read this file with other software? Have you tried other mnc
files?
On Wed, Jul 10, 2013 at 2:25 PM, Panagiotis Foteinos <
panagiotis.foteinos at gmail.com> wrote:
> I have given all the permissions to the file in question.
>
> The error I am getting is:
>
> *********************
> /home/pfoteino/local/bin/itk-4.4.0-bin/release/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volume.c:142
> (from MINC2): Unable to open file
> '/home/pfoteino/ITK_Images/BigBrain/full16_100um_2009b_sym.mnc'
> ExceptionObject caught!
>
> itk::ExceptionObject (0x28ab790)
> Location: "unknown"
> File:
> /home/pfoteino/local/src/ITK-4.4.0/Modules/IO/ImageBase/src/itkImageIOBase.cxx
> Line: 366
> Description: itk::ERROR: MINCImageIO(0x28aecf0): Unknown component type: 0
>
> *********************
>
> Best,
> Panagiotis
>
>
> On Wed, Jul 10, 2013 at 2:10 PM, Bill Lorensen <bill.lorensen at gmail.com>wrote:
>
>> Also, check the permissions on the file. And please post the new error.
>> The error message should now include the full path name.
>>
>>
>>
>> On Wed, Jul 10, 2013 at 1:44 PM, Panagiotis Foteinos <
>> panagiotis.foteinos at gmail.com> wrote:
>>
>>> Thank you for the reply.
>>>
>>> It did not solve the problem, however. Same error.
>>>
>>> Regards,
>>> Panagiotis Foteinos
>>>
>>>
>>> On Wed, Jul 10, 2013 at 1:16 PM, Bill Lorensen <bill.lorensen at gmail.com>wrote:
>>>
>>>> When you specify the file, you should provide the full path to the
>>>> file. The error says the file cannot be opened:
>>>> full16_100um_2009b_sym.mnc
>>>>
>>>>
>>>>
>>>>
>>>> On Wed, Jul 10, 2013 at 1:07 PM, Panagiotis Foteinos <
>>>> panagiotis.foteinos at gmail.com> wrote:
>>>>
>>>>> Greetings.
>>>>>
>>>>> Glad to see that MINC is supported.
>>>>>
>>>>>
>>>>> So, I enblabled MINC support and everything compiled nicely.
>>>>> Attempting to read, however, a *.mnc file, yielded the following error:
>>>>>
>>>>>
>>>>> ********************
>>>>> /home/pfoteino/local/bin/itk-4.4.0-bin/release/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volume.c:142
>>>>> (from MINC2): Unable to open file 'full16_100um_2009b_sym.mnc'
>>>>> ExceptionObject caught!
>>>>>
>>>>> itk::ExceptionObject (0x1fc2440)
>>>>> Location: "unknown"
>>>>> File:
>>>>> /home/pfoteino/local/src/ITK-4.4.0/Modules/IO/ImageBase/src/itkImageIOBase.cxx
>>>>> Line: 366
>>>>> Description: itk::ERROR: MINCImageIO(0x1fc0cd0): Unknown component
>>>>> type: 0
>>>>> ********************
>>>>>
>>>>> The MINC image I used was taken from the BigBrain project.
>>>>>
>>>>> Any suggestions?
>>>>>
>>>>>
>>>>> Best Regards,
>>>>> Panagiotis Foteinos
>>>>>
>>>>>
>>>>> On Mon, Jun 3, 2013 at 5:06 PM, Matt McCormick <
>>>>> matt.mccormick at kitware.com> wrote:
>>>>>
>>>>>> The InsightToolkit (ITK) 4.4.0 has been released!
>>>>>>
>>>>>> The 4.4 release is a major milestone that marks the hard work of many
>>>>>> outstanding community members.
>>>>>>
>>>>>> Links to the Sourceforge.net tarballs can be found on the download
>>>>>> page:
>>>>>>
>>>>>> http://www.itk.org/ITK/resources/software.html
>>>>>>
>>>>>>
>>>>>> We will discuss what is new in 4.4.0 on Tuesday, June 11 at 3PM
>>>>>> Eastern Time (GMT -5). To take part, join the “ITK BarCamp”
>>>>>> GooglePlus Community, and join the “What’s New in Release 4.4.0”
>>>>>> Event. A link to the YouTube live stream of the event will also be
>>>>>> posted at
>>>>>>
>>>>>> http://www.itk.org/ITK/resources/webinars.html
>>>>>>
>>>>>>
>>>>>> In summary:
>>>>>>
>>>>>> We are excited to announce two new ImageIO modules available in the
>>>>>> main repository. The MINC ImageIO module provides a bridge to the
>>>>>> MINC file format, a powerful medical imaging format used by the MINC
>>>>>> library, another open source library with many features similar to
>>>>>> ITK. The new MINC module, which has Image IO and Transform IO
>>>>>> capabilities, is considered experimental and must be enabled by
>>>>>> turning Module_ITKIOMINC ON in CMake’s configuration. This will
>>>>>> automatically build the MINC library, which is now available on Mac,
>>>>>> Linux, and Windows. The HDF5-based MINC2 file format is supported,
>>>>>> but support for the NetCDF-based MINC1 file format is not supported
>>>>>> because NetCDF is not distributed with ITK.
>>>>>>
>>>>>> Another new ImageIO module that expands the reach of ITK is the SCIFIO
>>>>>> module. SCIFIO is a refactoring of the Bio-Formats library. This
>>>>>> module provides access to a wide range of file formats encountered in
>>>>>> life sciences/microscopy environments. This experimental feature is
>>>>>> available a Remote module; to enable it, set the Fetch_SCIFIO CMake
>>>>>> variable to ON. Many improvements and fixes are ongoing for this
>>>>>> module; Git master is recommended for those interested in this module.
>>>>>>
>>>>>> A number of improvements were also made to DCMTK ImageIO, but this
>>>>>> module remains experimental on disabled by default. To try DCMTK
>>>>>> ImageIO support, turn the CMake option Module_ITKIODCMTK ON. For Unix
>>>>>> platforms, the supporting DCMTK library will automatically be built as
>>>>>> a CMake ExternalProject. On Windows, the DCMTK library must be built
>>>>>> independently of the ITK build system. Then, specify the location to
>>>>>> the external build after setting the CMake option ITK_USE_SYSTEM_DCMTK
>>>>>> ON.
>>>>>>
>>>>>> A number of performance improvements were made to QuadEdgeMesh
>>>>>> processing and memory copy functions. A new ImageScanlineIterator is
>>>>>> available. This iterator can be used in many of the cases where an
>>>>>> ImageRegionIterator is applied, but it has better performance.
>>>>>>
>>>>>> The approach to split image regions for parallel processing is no
>>>>>> longer hard coded to make multiple options available.
>>>>>>
>>>>>> An API design change was started to improve the implied functionality
>>>>>> of the GetObject methods. The non-const “GetObjectMacro” has been
>>>>>> replaced with a “GetModifiableObjectMacro” that will result in a
>>>>>> GetModifiableXXX method instead of a GetXXX method. This makes the
>>>>>> non-const nature of the method and the circumvention of pipeline
>>>>>> update semantics explicit for both the code author and those reading
>>>>>> the class API. This was implemented in a backwards compatible way,
>>>>>> and it will only be enforced if ITK_FUTURE_LEGACY_REMOVE is defined.
>>>>>>
>>>>>> Support for the Google Double Conversion library was added to improve
>>>>>> the reading and writing of double values as ASCII text with the
>>>>>> intention to improve the precision of the text transform file format’s
>>>>>> serialization.
>>>>>>
>>>>>> It is now easier to identify filter inputs by both a string name or an
>>>>>> integer index. The internal methods to store and retrieve inputs by
>>>>>> either string or index was correspondingly refactored, and performance
>>>>>> was also improved.
>>>>>>
>>>>>> JPEG ImageIO now writes and reads image spacing in a manner similar to
>>>>>> the TIFF ImageIO.
>>>>>>
>>>>>> An extensive amount of code cruft was removed and coding style was
>>>>>> made more consistent; ITK gets more stylish and classy with every
>>>>>> release!
>>>>>>
>>>>>> The ExternalData method to store large testing data outside of the Git
>>>>>> repository is now in upstream CMake 2.8.11. Our internal version has
>>>>>> been updated to the improved version in CMake.
>>>>>>
>>>>>> The minimum CMake required version was bumped to 2.8.8 on Windows and
>>>>>> 2.8.5 otherwise. This may be increased even higher in the near future
>>>>>> to ensure all CMake features utilized operate correctly.
>>>>>>
>>>>>> Known assertion failures occur when compiled under Visual Studio in
>>>>>> the Debug configuration. This will be fixed in 4.4.1. If this has a
>>>>>> significant negative impact on your work, please consider contributing
>>>>>> a Nightly dashboard build under this configuration. As previously
>>>>>> scheduled, Visual Studio 2005 is no longer be supported.
>>>>>>
>>>>>> Support for building against system third party libraries continues to
>>>>>> improve. Further improvements are expected for version 4.5.
>>>>>>
>>>>>> All tests are now passing again on the Nightly big-endian dashboard
>>>>>> system.
>>>>>>
>>>>>> InsightApplications (ITKApps) has seen fixes in the FLTK superbuild
>>>>>> and the TCL wrapped applications.
>>>>>>
>>>>>>
>>>>>>
>>>>>> Changes in ITK from v4.3.0 to v4.4.0 from the Git log:
>>>>>>
>>>>>> Ali Ghayoor (7):
>>>>>> ENH: Get the internal transforms of SyN registration filter
>>>>>> COMP: Fix all valid cppcheck warnings in "Module/Filtering"
>>>>>> directory
>>>>>> COMP: Fix all valid cppcheck warnings in "Module/Core"
>>>>>> directory
>>>>>> COMP: Fix all valid cppcheck warnings in
>>>>>> "Module/Segmentation" directory
>>>>>> COMP: Fix all valid cppcheck warnings in
>>>>>> "Module/Registration" directory
>>>>>> COMP: Fix all valid cppcheck warnings in ITK (last patch)
>>>>>> COMP: Fix all valid cppcheck warnings in "ITK/Module"
>>>>>> directory
>>>>>>
>>>>>> Arnaud Gelas (4):
>>>>>> PERF: improve performance of couple of methods of
>>>>>> itk::QuadEdgeMesh
>>>>>> PERF: couple of speed up improvements for QuadEdgeMesh
>>>>>> processing
>>>>>> PERF: avoid doing GetPoint and SetPoint for the same point
>>>>>> ENH: Simplify template parameters in itk::PointsLocator
>>>>>>
>>>>>> Bill Lorensen (20):
>>>>>> ENH: Prevent duplicate loading of dynamic libraries
>>>>>> COMP: Fix compile error in PhilipsRECImageIO
>>>>>> COMP: Fix compile error in PhilipsRECImageIO
>>>>>> BUG: Memory leak after failed RegisterFactory
>>>>>> BUG: Warn on directories
>>>>>> ENH: Refactor DoubleToString into NumberToString
>>>>>> DOC: Escape hash in comment
>>>>>> STYLE: Apply kwstyle to Modules/Core tests
>>>>>> STYLE: Apply kwstyle to Modules/Filtering tests
>>>>>> STYLE: Apply kwstyle to Modules/Segmentation tests
>>>>>> STYLE: Apply kwstyle to Modules/IO tests
>>>>>> STYLE: Apply kwstyle to Modules/Numerics tests
>>>>>> STYLE: Apply kwstyle to Modules/Registration tests
>>>>>> STYLE: Apply kwstyle to some tests
>>>>>> BUG: Memory leak after failed RegisterFactory
>>>>>> COMP: Remove copy_n wrapper for standard std::copy
>>>>>> COMP: Make the test stable by removing random source
>>>>>> COMP: More baselines
>>>>>> COMP: Another baseline
>>>>>> COMP: Missing return error after exception
>>>>>>
>>>>>> Brad King (14):
>>>>>> BUG: ExternalData: Do not match directory names when
>>>>>> resolving DATA{}
>>>>>> STYLE: ExternalData: Cleanup stray TODO and typo in comments
>>>>>> STYLE: ExternalData: Remove unused private interface
>>>>>> ENH: ExternalData: Improve series matching using an explicit
>>>>>> syntax
>>>>>> ENH: ExternalData: Allow ()-groups in series match regex
>>>>>> ENH: ExternalData: Allow DATA{} syntax to reference
>>>>>> directories
>>>>>> ENH: Configure new ExternalData series parsing for ITK
>>>>>> baselines
>>>>>> BUG: ExternalData: Collapse ../ components in DATA{} paths
>>>>>> BUG: Fix "git gerrit-push" for content links with spaces
>>>>>> STYLE: Add detail to the vxl update instructions
>>>>>> STYLE: Add more detail to the vxl update instructions
>>>>>> ENH: ExternalData: Partly generalize hash algo/ext handling
>>>>>> ENH: ExternalData: Attach download rules to content links in
>>>>>> IDEs
>>>>>> ENH: ExternalData: Preserve escaped semicolons during
>>>>>> argument expansion
>>>>>>
>>>>>> Bradley Lowekamp (78):
>>>>>> STYLE: Use ITK_ prefix for FFTW cmake variables and defines
>>>>>> BUG: Change default boundary condition to ZeroFlux
>>>>>> ENH: wrapping itkImageSeriesWriter
>>>>>> BUG: incorrect CMake variable for system jpeg include
>>>>>> DOC: Correct description of Bitwise binary filters
>>>>>> BUG: incorrect CMake variable for system jpeg include
>>>>>> COMP: GetTimeVaryingVelocityField methods did not compile
>>>>>> ENH: Creating templateless region splitter classes
>>>>>> ENH: Adding image region splitter for separable filtering
>>>>>> PERF: Do not spawn threads that will not be used.
>>>>>> ENH: ImageIO's now use ImageRegionSplitter base
>>>>>> COMP: Specify export for Specialized Array output operators
>>>>>> ENH: making old ImageRegionSplitter compatible with new
>>>>>> splitter
>>>>>> BUG: initials Direction IVAR
>>>>>> STYLE: never a space before;
>>>>>> COMP: Address unused parameter warning in GPU code
>>>>>> BUG: Do not create static initialized ITK objects
>>>>>> ENH: Converted Multidimensional splitter to new base class
>>>>>> ENH: moving old ImageRegionSplitter to Deprecated Module
>>>>>> BUG: Only thread 0 should report progress.
>>>>>> PERF: Use std::fill for image filling
>>>>>> BUG: Only thread 0 should report progress in LabelMapFilters
>>>>>> COMP: Adding missing header
>>>>>> BUG: Using CMake variable in external builds with autoconf
>>>>>> environment
>>>>>> BUG: initialize InverseCovariance size with degenerate matrix
>>>>>> ENH: Adding numeric_traits specializations for "long long"
>>>>>> ENH: instantiate vnl types with "long long" on all platforms
>>>>>> Revert "ENH: Use named inputs in BinaryReconstruction
>>>>>> filters."
>>>>>> BUG: initialize InverseCovariance size with degenerate matrix
>>>>>> BUG: Using CMake variable in external builds with autoconf
>>>>>> environment
>>>>>> COMP: Address unused parameter warning in GPU code
>>>>>> BUG: Only thread 0 should report progress in LabelMapFilters
>>>>>> BUG: Only thread 0 should report progress.
>>>>>> COMP: Adding missing header
>>>>>> ENH: Adding support for instantiating long long pixel types
>>>>>> BUG: VerifyPreconditions checks required named inputs
>>>>>> PERF: Adding performance oriented ScanlineIterator
>>>>>> COMP: Remove copy_n wrapper for standard std::copy
>>>>>> COMP: Missing ProgressReporter header
>>>>>> COMP: Suppress linker warning from fftw external project
>>>>>> COMP: Add missing ImageRegionIterator header in test
>>>>>> BUG: Don't allocate empty names in Get I/O Names methods
>>>>>> COMP: Make GPUFunctorBase destructor virtual
>>>>>> PERF: Changing filters to use ImageScanlineInterator
>>>>>> COMP: GCC_XML external project does not use BUILD_EXAMPLES
>>>>>> BUG: Scanline iterator in STAPLE filter not advanced to next
>>>>>> line
>>>>>> PERF: Use ImageScanlineIterator in ImageAlgorithm::Copy
>>>>>> PERF: Use iterators into name map for index inputs
>>>>>> ENH: index can be associated with required input
>>>>>> PERF: Add global variable of index names in ProcessObject
>>>>>> COMP: fix unused result warning in ProcessObject
>>>>>> ENH: Remove names inputs specialized comparison
>>>>>> DOC: Updated input methods doxygen
>>>>>> PERF: Use ImageAlgorithm::Copy in JoinSeries filter
>>>>>> PERF: Change default index i/o prefix to just "_"
>>>>>> PERF: Use ImageAlgorithm::Copy in CastImageFilter
>>>>>> COMP: Fix failing implicit conversion from NULL
>>>>>> BUG: restore gnu aligned attribute
>>>>>> PERF: ImageAlgorithm::copy to use std::copy for conversion
>>>>>> PERF: Store indexed outputs in array for constant time access
>>>>>> COMP: GCC_XML compilation error with type_traits
>>>>>> BUG: Add unsigned int concept check to LabelVoting filter
>>>>>> COMP: Disable conversion warning for std::copy in
>>>>>> ImageAlgorithm
>>>>>> BUG: Use correct types for TIFF Tags and buff math
>>>>>> BUG: Use local var for TIFF va_list parameter
>>>>>> BUG: Use correct bytes for BigEndian magic number
>>>>>> COMP: Fix int to char narrowing error and warning
>>>>>> COMP: Fix int to char narrowing error and warning
>>>>>> COMP: Fix scanf conversion specification to %u
>>>>>> COMP: Fix scanf conversion specification for id types
>>>>>> BUG: Remove extraneous print statement in tiffio
>>>>>> BUG: Incorrect va_arg type used in TIFF and LSM
>>>>>> BUG: JPEG2000 bool type in C is now unsigned char
>>>>>> BUG: add a test to demonstrate ThreadedIteratorPartitioner bug
>>>>>> BUG: Fix written other magic number in FreeSurferBinaryMeshIO
>>>>>> COMP: Fix assert in LSM, = in err of ==
>>>>>> BUG: IteratorPartitioner extra thread don't advance
>>>>>> BUG: C++ bool is 4 bytes on osx ppc
>>>>>>
>>>>>> Brian Helba (11):
>>>>>> STYLE: Ensure documentation \author tags are parsed
>>>>>> STYLE: Remove unnecessary overloads in favor of implicit
>>>>>> conversion
>>>>>> PERF: Replace deep copy with const const signature
>>>>>> ENH: Re-enable LoadPrivateTags option in GDCMImageIO
>>>>>> STYLE: Slightly refactor ImageFileWriter::Write to simplify
>>>>>> logic
>>>>>> ENH: Always enable Get*FromTag methods in GDCMImageIO
>>>>>> DOC: Fix misspelling in MorphologyImageFilter
>>>>>> DOC: Fix misspelling in ObjectMorphologyImageFilter
>>>>>> STYLE: Remove unnecessary function call in GDCMImageIO
>>>>>> STYLE: Remove calls to deprecated functionality from DICOM
>>>>>> Examples / Tests
>>>>>> ENH: Allow Get*FromTag to accept uppercase hex
>>>>>>
>>>>>> Cory Quammen (1):
>>>>>> COMP: Bumped up minimum required CMake version
>>>>>>
>>>>>> Cyrille Faucheux (2):
>>>>>> ENH: allow the ClampImageFilter to use user-defined bounds
>>>>>> (#3016).
>>>>>> ENH: Move the ClampImageFilter to the ImageIntensity module
>>>>>> (#3016).
>>>>>>
>>>>>> David Cole (4):
>>>>>> BUG: Avoid using def file when BUILD_SHARED_LIBS is off
>>>>>> BUG: Do not undefine _WIN32_WINNT
>>>>>> BUG: Avoid using def file when BUILD_SHARED_LIBS is off
>>>>>> BUG: Do not undefine _WIN32_WINNT
>>>>>>
>>>>>> David Fuentes (2):
>>>>>> ENH: Allow block matching on diff size images
>>>>>> ENH: wrapping itkMaskFeaturePointSelectionFilter
>>>>>> itkBlockMatchingImageFilter
>>>>>>
>>>>>> Dirk Padfield (6):
>>>>>> BUG: CSVFileReader was reading all values as NaN
>>>>>> DOC: Made AnisotropicDiffusion documentation consistent with
>>>>>> code
>>>>>> ENH: Enable MetaIO to read filenames with spaces using regex
>>>>>> BUG: CSVFileReader was reading all values as NaN
>>>>>> ENH: Added m_RequiredFractionOfOverlappingPixels to
>>>>>> MaskedFFTNCC
>>>>>> BUG: SignedMaurerDistanceMap in 4D
>>>>>>
>>>>>> Google double-conversion Maintainers (1):
>>>>>> Google double-conversion (reduced)
>>>>>>
>>>>>> Hans Johnson (21):
>>>>>> COMP: Remove unnecessary BORLAND code
>>>>>> COMP: Make type conversions explicit/consistent
>>>>>> PERF: Optimize loop index computations
>>>>>> COMP: Remove unnecessary BORLAND code
>>>>>> COMP: Incomplete variable name change.
>>>>>> COMP: Incorrect warning presented for cppcheck
>>>>>> STYLE: The FFTW libs should be co-located with ITK
>>>>>> COMP: Fix robustness of DCMTK internal builds
>>>>>> ENH: Get function accessible from const objects
>>>>>> COMP: Missing patch for ITK_FUTURE_LEGACY_REMOVE
>>>>>> STYLE: Reduce redundant code identified by cpd
>>>>>> BUG: Return a modifiable object or provide const
>>>>>> STYLE: Improve SoftwareGuide documentation
>>>>>> COMP: Type mis-match for comparison operator
>>>>>> STYLE: Enforce using ITK macros when available
>>>>>> COMP: Type mis-match for comparison operator
>>>>>> BUG: ITK_FUTURE_LEGACY_REMOVE must cmake configured
>>>>>> BUG: Expose BSplineInterpolateImageFunction test
>>>>>> COMP: Linkage ITK_ABI_EXPORT to ITKCommon_EXPORT
>>>>>> BUG: itk_tiff.h should not be in itkTIFFImageIO.h
>>>>>> DOC: Fix line length issues for the SoftwareGuide
>>>>>>
>>>>>> Ho Cheung (7):
>>>>>> BUG: GradientVectorFlow should calculate timestep based on
>>>>>> image dimension
>>>>>> STYLE: GradientVectorFlow - Add const correctness
>>>>>> STYLE: GradientVectorFlow
>>>>>> PERF: GradientVectorFlow - Remove redundant initializations
>>>>>> BUG: itkPolyLineParametricPath infinite loop for degenerate
>>>>>> paths
>>>>>> BUG: Fix ITK Path test failures
>>>>>> BUG: ITK unable to detect number of threads under Unix in
>>>>>> recent glibc.
>>>>>>
>>>>>> ITK Migration V4 (4):
>>>>>> DOC: Modify ContourMeanDistanceImageFilter comments.
>>>>>> DOC: Modify MattesMutualInformationImageToImageMetric
>>>>>> comments.
>>>>>> DOC: Modify MaskImageFilter comments.
>>>>>> DOC: Modify BSplineTransformInitializer comments.
>>>>>>
>>>>>> Jan Margeta (1):
>>>>>> COMP: Added missing header <functional> in
>>>>>> itkAnchorCloseImageFilter.h
>>>>>>
>>>>>> Julien Finet (2):
>>>>>> ENH: Add unit test to itkThresholdImageFilterTest
>>>>>> ENH: Add MaskingValue to MaskImageFilter
>>>>>>
>>>>>> Julien Malik (2):
>>>>>> BUG: Remove itkLoad definition in JPEG2000ImageIOFactory
>>>>>> ENH: Add missing NumericTraits for complex
>>>>>>
>>>>>> Julien Michel (2):
>>>>>> BUG: Fix InverseDisplacementFieldImageFilter bug
>>>>>> BUG: Fix InverseDisplacementFieldImageFilter bug
>>>>>>
>>>>>> Kent Williams (21):
>>>>>> COMP: Turn on -fpic in options for DCMTK External Project
>>>>>> BUG: using InputPixelType to hold label count can overflow.
>>>>>> COMP: Update DCMTK version to incorporate new fixes.
>>>>>> COMP: Use portable method to find source dir & find DCMTK
>>>>>> headers
>>>>>> COMP: Start using ITKConsortium github to retrieve DCMTK.
>>>>>> BUG: Regressions with respect to building DCMTK
>>>>>> COMP: Added patch from Dirk Padfield
>>>>>> ENH: use find_package(DCMTK NO_MODULE)
>>>>>> ENH: Add double-conversion library for precise Float output
>>>>>> COMP: replace in-line access methods with itk Macros
>>>>>> COMP: The install path for DoubleConversion lib was wrong.
>>>>>> COMP: removed warnings on Windows due to generic vs excp obj
>>>>>> throw.
>>>>>> COMP: check for this == &rhs as much as possible.
>>>>>> COMP: Replace memcpy with std::copy in ImportImageContainer.
>>>>>> COMP: Replace memcpy calls with std::copy
>>>>>> COMP: Further changes to the use of std::copy_n
>>>>>> COMP: Add preprocessor symbols to double-conversion for OS X
>>>>>> PPC
>>>>>> COMP: Add DoubleConversion merge from upstream documentation
>>>>>> BUG: Return of NaN by
>>>>>> DiffusionTensor3D::GetFractionalAnisotropy
>>>>>> BUG: Dicom method for Dir Cosines made non-orthogonal
>>>>>> directions
>>>>>> COMP: Install openjpgDllConfig.h
>>>>>>
>>>>>> Kris Zygmunt (1):
>>>>>> PERF: Provide better default config for patch-based denoiser
>>>>>>
>>>>>> Luis Ibanez (1):
>>>>>> ENH: Maurer for Danielsson in Surface Distance.
>>>>>>
>>>>>> Manuel Grizonnet (4):
>>>>>> BUG: Inconsistency detected by ld.so due to static const
>>>>>> string
>>>>>> BUG: Inconsistency detected by ld.so due to static const
>>>>>> string
>>>>>> BUG: Inconsistency detected by ld.so due to static const
>>>>>> string
>>>>>> BUG: Inconsistency detected by ld.so due to static const
>>>>>> string
>>>>>>
>>>>>> Marco Feuerstein (1):
>>>>>> ENH: JPEG IO now writes and reads spacing, similar to the
>>>>>> TIFF IO (ITK-3023)
>>>>>>
>>>>>> Marius Staring (3):
>>>>>> ENH: expose parameter in Bilateral filter
>>>>>> PERF: Replace fill and copy with std alternatives
>>>>>> BUG: B-spline interpolator should use direction
>>>>>>
>>>>>> Mark Hiner (1):
>>>>>> ENH: Add SCIFIOImageIO.
>>>>>>
>>>>>> Matthew McCormick (47):
>>>>>> COMP: Fix wrapping configuration warnings about itkMeshBase,
>>>>>> etc.
>>>>>> COMP: Fix HDF5 unused function for long long on Unix.
>>>>>> ENH: Bump CMake version numbers to 4.4.0.
>>>>>> BUG: Remove unused metric test content link.
>>>>>> COMP: Add DLL to PATH for Python tests on Visual Studio.
>>>>>> BUG: Do not nullify the DCMTK ExternalProject UPDATE_COMMAND.
>>>>>> BUG: Fix DCMTK lib_prefix identification.
>>>>>> COMP: Fix HDF5 unused function for long long on Unix.
>>>>>> BUG: Remove unused metric test content link.
>>>>>> COMP: Add DLL to PATH for Python tests on Visual Studio.
>>>>>> ENH: Bump CMakeLists.txt ITK version to 4.3.1.
>>>>>> STYLE: Fix errors detected by KWStyleCodeTest.
>>>>>> COMP: VectorIndexSelectionCastImageFilter extra itk namespace.
>>>>>> STYLE: Fix alignment in itkMask{Image,Negated}ImageFilter.h
>>>>>> ENH: Doxygen configuration update to 1.8.3.1.
>>>>>> BUG: Fix FFTW install paths in ITKConfig.cmake (ITK-2995).
>>>>>> DOC: Doxygen detection of DirectionTolerance as private.
>>>>>> ENH: Get Direction and CoordinateTolerance are const methods.
>>>>>> BUG: Add missing header to the third party TIFF install.
>>>>>> COMP: More fixes to mesh wrapping warnings.
>>>>>> BUG: Temporarily disable Python utility tests.
>>>>>> COMP: Avoid explicit instantiation and specialization for
>>>>>> Array.
>>>>>> ENH: Add utility script to create JRE tarballs.
>>>>>> ENH: Use named inputs in BinaryReconstruction filters.
>>>>>> STYLE: Remove redundant itk namespace.
>>>>>> DOC: CreateTestDriver srcs should have the .cxx extension.
>>>>>> COMP: Must reinterpret the pointers to match
>>>>>> COMP: Fix project linking against ITK that does not use
>>>>>> VtkGlue.
>>>>>> COMP: Fix project linking against ITK that does not use
>>>>>> VtkGlue.
>>>>>> BUG: Fix FFTW install paths in ITKConfig.cmake (ITK-2995).
>>>>>> ENH: Bump version in CMakeLists.txt to 4.3.2.
>>>>>> DOC: Doxygen expansion of itkGetModifiableObjectMacro.
>>>>>> ENH: Remove unused wrapping code. ITK-3032.
>>>>>> ENH: Use named inputs in BinaryReconstruction filters.
>>>>>> COMP: Distance maps filters cannot wrap 1D.
>>>>>> DOC: Remove reference to MeanDistanceImageFilter.
>>>>>> STYLE: Fix KWStyle errors.
>>>>>> STYLE: Remove entries from the old MINC2ImageIO.
>>>>>> BUG: Remove MINCIO from the default registered modules.
>>>>>> BUG: Add EXCLUDE_FROM_ALL to ThirdParty/MINC.
>>>>>> BUG: Include SCIFIO in the auto-registered factories if the
>>>>>> module
>>>>>> is enabled.
>>>>>> BUG: Visual Studio itkClampImageFilterTest failures.
>>>>>> STYLE: itkClampImageFilter.hxx in the wrong module.
>>>>>> COMP: Add _CRT_NO_SECURE_WARNINGS when building GCCXML.
>>>>>> COMP: Prevent ITK_USE_64BITS_IDS with Wrapping on Windows.
>>>>>> STYLE: Too many blank lines in itkCastImageFilterTest.cxx.
>>>>>> COMP: Bump MINC third party to fix warnings.
>>>>>>
>>>>>> Nick Tustison (4):
>>>>>> ENH: Adding masking capabilities with confidence mask option.
>>>>>> BUG: Masks need to be warped.
>>>>>> ENH: Permitting access to shrinking per dimension.
>>>>>> BUG: Valgrind error.
>>>>>>
>>>>>> Nicolas Rey (1):
>>>>>> STYLE: Minor style fixes
>>>>>>
>>>>>> Paul Novotny (3):
>>>>>> COMP: Fix TIFF on big endian systems
>>>>>> COMP: Build fails with ITK_USE_SYSTEM_TIFF
>>>>>> COMP: Fix TIFF on big endian systems
>>>>>>
>>>>>> Prathamesh Kulkarni (1):
>>>>>> COMP: QuickViewTest new baseline.
>>>>>>
>>>>>> Sean McBride (4):
>>>>>> STYLE: fixed minor spelling: XCode -> Xcode
>>>>>> COMP: fixed clang warning about NULL to bool conversion
>>>>>> BUG: Handle missing Analyze 7.5 flipped directions
>>>>>> COMP: Handle missing Analyze 7.5 flipped directions
>>>>>>
>>>>>> Tim Allman (3):
>>>>>> DOC: Modify BSplineTransform comments.
>>>>>> DOC: Modify
>>>>>> JointHistogramMutualInformationImageToImageMetricv4 comments.
>>>>>> DOC: Modify
>>>>>> JointHistogramMutualInformationImageToImageMetricv4 comments.
>>>>>>
>>>>>> Tom Vercauteren (2):
>>>>>> COMP: GPUPDEDeformableRegistrationFilter.cl fails to
>>>>>> "compile".
>>>>>> COMP: GPUPDEDeformableRegistrationFilter.cl fails to
>>>>>> "compile".
>>>>>>
>>>>>> Vladimir S. FONOV (2):
>>>>>> ENH: Adding libminc and updating MINC IO support.
>>>>>> BUG: Making 2D Minc IO work properly
>>>>>>
>>>>>> Xiaoxiao Liu (2):
>>>>>> ENH: Sync python scripts with python3.
>>>>>> ENH: Sync python scripts with python3.
>>>>>>
>>>>>> Yan Xu (1):
>>>>>> COMP: static cast unsigned int to int
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> Changes in ITKapps from v4.3.0-apps to v4.4.0-apps:
>>>>>>
>>>>>> Bill Lorensen (3):
>>>>>> COMP: VTK6 API change
>>>>>> ENH: Add TCL Wrapped examples
>>>>>> BUG: Missing includes for ITK4.4
>>>>>>
>>>>>> Hans Johnson (1):
>>>>>> COMP: Mac 10.8 fixes were incorporated in FLTK
>>>>>>
>>>>>> Jamie Snape (1):
>>>>>> BUG: Propagate build, linker, and OSX settings to external
>>>>>> projects
>>>>>>
>>>>>> Matt McCormick (6):
>>>>>> COMP: Re-add the FLTK patch for some Macs.
>>>>>> BUG: ITK External build only depends on VTK if being built.
>>>>>> COMP: Update FLTK SVN configuration.
>>>>>> ENH: Bump VTK ExternalProject to 5.10.1.
>>>>>> COMP: Use FLTK zip file stored on Midas3.
>>>>>> ENH: Bump ITK superbuild version to 4.4.0.
>>>>>>
>>>>>> Roland Kwitt (1):
>>>>>> COMP: Shadowing warning in GLSliceView.h
>>>>>>
>>>>>> Stephen R. Aylward (1):
>>>>>> COMP: Fix FLTK build error on Mac/Clang.
>>>>>>
>>>>>> Xiaoxiao Liu (1):
>>>>>> ENH: Print out accurate image IO error message.
>>>>>>
>>>>>>
>>>>>>
>>>>>> Changes from v4.3.0 to v4.4.0 from the Jira Issue tracker:
>>>>>>
>>>>>> [ITK-3002] - Make itkGetObjectMacro issue compile time warnings
>>>>>> [ITK-3003] - Add itkGetObjectMacro to the ITK_LEGACY_REMOVE option
>>>>>> [ITK-3085] - itkBSplineExponentialImageRegistrationTest Timeout on
>>>>>> RogueResearch11
>>>>>> [ITK-3086] - QuickViewTest test failure on farsight-mint
>>>>>> [ITK-3087] - itkLargeMetaImageWriteReadTest4 test failure on
>>>>>> dash5win7x64.kitware
>>>>>> [ITK-3088] - itkClampImageFilterTest test failure on lhcp-win7vm2.nlm
>>>>>> Win32-VS9-Release-Shared VS10-Release-Shared
>>>>>> [ITK-3089] - itkLSMImageIOTest on eldorado.kitware
>>>>>> Ubuntu-g++-4.6.2-Debug
>>>>>> [ITK-3090] - itkTimeVaryingVelocityFieldImageRegistrationTest test
>>>>>> failure on eldorado.kitware Ubuntu-g++-4.6.2-Debug
>>>>>> [ITK-3091] - itkLSMImageIOTest test failure on RogueResearch9,
>>>>>> Mac10.6-gcc-rel-x86_64-static
>>>>>> [ITK-3093] - itkTIFFImageIOSpacing test failure on mini0.nlm,
>>>>>> MacOSX-cross-rosetta
>>>>>> [ITK-3094] - itkMeshFileReadWriteTest04 test failure on mini0.nlm,
>>>>>> MacOSX-cross-rosetta
>>>>>> [ITK-3095] - itkMeshFileReadWriteTest02 test failure on mini0.nlm,
>>>>>> MacOSX-cross-rosetta
>>>>>> [ITK-3096] - itkDiscreteGaussianImageFilterTest2 test failure on
>>>>>> mini0.nlm, MacOSX-cross-rosetta
>>>>>>
>>>>>> Bug
>>>>>> [ITK-2889] - Bug in BSplineInterpolateImageFunction ?
>>>>>> [ITK-2919] - Build with JOM fails to properly generate
>>>>>> ITKTargets.cmake
>>>>>> [ITK-2943] - Add migration guide related to "itkTestMain.h"
>>>>>> [ITK-2975] - itk::CastImageFilter creates bad output
>>>>>> [ITK-2978] - ImageSeriesFileReader MetaDataDictionary Array
>>>>>> Incorrectly Handles Missing Fields
>>>>>> [ITK-2983] - ITKVtkGlue not adding VTK_LIBRARIES
>>>>>> [ITK-2988] - tiff name pollution
>>>>>> [ITK-2989] - A factor of 1/standard_deviation is missing from the
>>>>>> kernel pdf estimator in MutualInformationImageToImageMetric
>>>>>> [ITK-2992] - tif_config.h is not install
>>>>>> [ITK-2995] - Install tree ITKConfig.cmake is wrong for FFTW
>>>>>> [ITK-3004] - Direction cosine matrix generated using the images DICOM
>>>>>> tag "image orientation (patient)" or (0020,0037) is not necessarilly
>>>>>> orthogonal
>>>>>> [ITK-3009] - itk::InverseDisplacementFieldImageFilter does not work
>>>>>> properly
>>>>>> [ITK-3011] - Maurer for Danielsson in Surface Distance
>>>>>> [ITK-3012] - ld error on exit when using itkBinaryErodeImageFilter and
>>>>>> itkBinaryDilateImageFilter
>>>>>> [ITK-3015] - Modules/IO/PhillipsREC/src/itkPhilipsPar.cxx contains
>>>>>> nonsense code
>>>>>> [ITK-3017] - ITK_ABI_EXPORT is used directly when ITKCommon_EXPORT
>>>>>> should be used
>>>>>> [ITK-3020] - ImageRegistration2D bug
>>>>>> [ITK-3021] - itk::ImportImageContainer use of memcpy seen as harmful
>>>>>> [ITK-3028] - BUG: B-spline interpolator should use direction
>>>>>> [ITK-3064] - BSplineDeformableTransform writes out a warning every
>>>>>> time a point in an image is transformed, causes memory allocation
>>>>>> errors
>>>>>> [ITK-3065] - TestImportImageContainer cannot handle memory
>>>>>> reallocation
>>>>>> [ITK-3066] - BSplineDeformableTransform::InsideValidRegion icm with
>>>>>> even spline orders and ITK_USE_CENTERED_PIXEL_COORDINATES_CONSISTENTLY
>>>>>> [ITK-3068] - Cannot resample a VectorImage
>>>>>> [ITK-3069] - itkMersenneTwisterRandomVariateGenerator is not thread
>>>>>> safe
>>>>>> [ITK-3070] - IPLCommonImageIO fails to read GE Signa CT file series.
>>>>>> [ITK-3071] - PolyLineParametricPath converges too slow
>>>>>> [ITK-3072] - itkTransforms could supply a spatial Jacobian.
>>>>>> [ITK-3083] - Clean Dashboard for 4.4 release
>>>>>> [ITK-3118] - inconsistent behavior of all filters derived from
>>>>>> itk::BinaryFunctorImageFilter
>>>>>>
>>>>>> Improvement
>>>>>> [ITK-2896] - Add missing NumericTraits for complex
>>>>>> [ITK-2940] - MaskedFFTNormalizedCorrelationImageFilter should be
>>>>>> templated on MaskType
>>>>>> [ITK-2964] - CMake warnings about "Perhaps should you turn on more
>>>>>> WRAP_* options" not helpful.
>>>>>> [ITK-2977] - itkMatrix sometimes requires extra VNL includes, leading
>>>>>> to confusing linker errors
>>>>>> [ITK-2980] - STYLE: Make FEM Get/Set codes use itkMacros wherever
>>>>>> possible
>>>>>> [ITK-2993] - Add Masking value to MaskImageFilter
>>>>>> [ITK-2996] - Improve speed bilateral filter
>>>>>> (itk::BilateralImageFilter)
>>>>>> [ITK-3001] - itkGetObjectMacro pervasively hides the
>>>>>> itkGetConstObjectMacro
>>>>>> [ITK-3008] - Apply cppcheck to ITK
>>>>>> [ITK-3016] - Allow the ClampImageFilter to use user-defined bounds
>>>>>> [ITK-3073] - Const Correctness Warning
>>>>>>
>>>>>> New Feature
>>>>>> [ITK-2985] - Get the internal transforms of the
>>>>>> itkSyNImageRegistrationMethod
>>>>>> [ITK-3005] - Add ITK icon to ITK wiki, doc and examples
>>>>>> Task
>>>>>> [ITK-2560] - Remove ITK_TEMPLATE_TXX
>>>>>> [ITK-2979] - Fix doxygen documentation
>>>>>> [ITK-3032] - Duplicate Source Code Versions of
>>>>>> itkImagetoVTKImageFilter
>>>>>>
>>>>>>
>>>>>>
>>>>>> Enjoy ITK!
>>>>>> _____________________________________
>>>>>> Powered by www.kitware.com
>>>>>>
>>>>>> Visit other Kitware open-source projects at
>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>
>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>> http://www.kitware.com/products/protraining.php
>>>>>>
>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>
>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>>>
>>>>>
>>>>>
>>>>> _____________________________________
>>>>> Powered by www.kitware.com
>>>>>
>>>>> Visit other Kitware open-source projects at
>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>
>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>> http://www.kitware.com/products/protraining.php
>>>>>
>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>
>>>>> Follow this link to subscribe/unsubscribe:
>>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> Unpaid intern in BillsBasement at noware dot com
>>>>
>>>
>>>
>>
>>
>> --
>> Unpaid intern in BillsBasement at noware dot com
>>
>
>
--
Unpaid intern in BillsBasement at noware dot com
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.itk.org/pipermail/insight-users/attachments/20130710/173ae21c/attachment-0001.htm>
More information about the Insight-users
mailing list