[Insight-users] ITK 4.3.2 compilation with python wrappers: problem with gccxml
Matt McCormick
matt.mccormick at kitware.com
Mon May 6 15:15:06 EDT 2013
Hi Martin,
The glibc package may be too new, also. What version do you have?
Thanks,
Matt
On Tue, Apr 30, 2013 at 6:23 AM, Martin Schober <m.schober at fz-juelich.de> wrote:
> Hello,
>
> I tried to compile with gcc 4.4.7 and gcc 4.6.4 In both cases I get this
> error:
>
> [ 21%] Generating vcl_complex.xml
> In file included from /usr/include/endian.h:60,
> from /usr/include/ctype.h:40,
> from
> /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/cctype:44,
> from
> /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h:44,
> from
> /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/ios:42,
> from
> /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/ostream:40,
> from
> /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/iostream:40,
> from
> /localdata/martin/setup_files/InsightToolkit-4.3.2/Modules/Core/Common/include/itkSmartPointer.h:21,
> from
> /localdata/martin/setup_files/InsightToolkit-4.3.2/Modules/Core/Common/include/itkLightObject.h:21,
> from
> /localdata/martin/setup_files/InsightToolkit-4.3.2/Modules/Core/Common/include/itkObject.h:31,
> from
> /localdata/martin/setup_files/InsightToolkit-4.3.2/Modules/Core/Common/include/itkCommand.h:21,
> from
> /localdata/martin/setup_files/InsightToolkit-4.3.2/build/Wrapping/Modules/ITKCommon/vcl_complex.cxx:1:
> /usr/include/bits/byteswap.h: In function 'unsigned int __bswap_32(unsigned
> int)':
> /usr/include/bits/byteswap.h:47: error: '__builtin_bswap32' was not declared
> in this scope
> /usr/include/bits/byteswap.h: In function '__uint64_t
> __bswap_64(__uint64_t)':
> /usr/include/bits/byteswap.h:111: error: '__builtin_bswap64' was not
> declared in this scope
> make[2]: *** [Wrapping/Modules/ITKCommon/vcl_complex.xml] Error 1
> make[1]: *** [Wrapping/Modules/ITKCommon/CMakeFiles/ITKCommonGccXML.dir/all]
> Error 2
> make: *** [all] Error 2
>
>
>
> On 29.04.2013 15:55, Bradley Lowekamp wrote:
>>
>> Hello,
>>
>> I am able to build it on my Redhat 6 system with gcc 4.4.7 and gcc 4.7.2.
>>
>> I don't think gcc_xml support gcc 4.8.
>>
>> In my build directory I see files like the following:
>>
>>
>> ITK-build/Wrapping/Generators/GccXML/gccxml/src/GCC_XML/GCC_XML/Support/GCC/4.?/gccxml_builtins.h
>>
>> Where the gcc version goes from 4.0 to 4.7.
>>
>> I believe that a freshly upgraded Arch Linux is close to the opposite
>> side of the stability spectrum as Redhat. So you are quite on the bleeding
>> edge of things. Are you up able to obtain an older compiler that has
>> actually been officially release by gcc?
>>
>> Brad
>>
>> On Apr 29, 2013, at 9:40 AM, Martin Schober <m.schober at fz-juelich.de>
>> wrote:
>>
>>> What is the gcc version you were able to compile itk with?
>>>
>>> My configuration options to build itk:
>>> BUILD_EXAMPLES OFF
>>> BUILD_SHARED_LIBS ON
>>> BUILD_TESTING OFF
>>> CMAKE_BUILD_TYPE Release
>>> INSTALL_WRAP_ITK_COMPATIBILITY ON
>>> ITKV3_COMPATIBILITY ON
>>> ITK_BUILD_ALL_MODULES ON
>>> ITK_USE_SYSTEM_SWIG OFF
>>> ITK_WRAP_DIMS 2;3
>>> ITK_WRAP_DOC OFF
>>> ITK_WRAP_EXPLICIT OFF
>>> ITK_WRAP_GCCXML ON
>>> ITK_WRAP_JAVA OFF
>>> ITK_WRAP_PERL OFF
>>> ITK_WRAP_PYTHON ON
>>> ITK_WRAP_RUBY OFF
>>> ITK_WRAP_SWIGINTERFACE ON
>>> ITK_WRAP_TCL OFF
>>> ITK_WRAP_complex_double OFF
>>> ITK_WRAP_complex_float OFF
>>> ITK_WRAP_covariant_vector_doub OFF
>>> ITK_WRAP_covariant_vector_floa OFF
>>> ITK_WRAP_double OFF
>>> ITK_WRAP_float ON
>>> ITK_WRAP_rgb_unsigned_char ON
>>> ITK_WRAP_rgb_unsigned_short OFF
>>> ITK_WRAP_rgba_unsigned_char OFF
>>> ITK_WRAP_rgba_unsigned_short OFF
>>> ITK_WRAP_signed_char ON
>>> ITK_WRAP_signed_long OFF
>>> ITK_WRAP_signed_short OFF
>>> ITK_WRAP_unsigned_char ON
>>> ITK_WRAP_unsigned_long OFF
>>> ITK_WRAP_unsigned_short OFF
>>> ITK_WRAP_vector_double OFF
>>> ITK_WRAP_vector_float ON
>>>
>>> I tried both versions of gccxml: system and itk built.
>>> My gcc version is the system compiler. I installed it with pacman -S gcc
>>> on arch-linux operation system.
>>> My cmake version is 2.8.10.2
>>>
>>>
>>> On 29.04.2013 15:14, Bradley Lowekamp wrote:
>>>>
>>>> Hello Martin,
>>>>
>>>> I was just able to build ITK with ITK_WRAP_PYTHON and shared libraries
>>>> turned on without a problem from the master branch. You indicate that you
>>>> are using a pre-release version of the compiler, so I am a little skeptical
>>>> that the problem is with ITK.
>>>>
>>>> What configuration options did you set?
>>>>
>>>> Are you using the version of gcc_xml that get built with ITK?
>>>>
>>>> Is that pre-release version of gcc the system compiler? If you use the
>>>> system compiler do you get the same error?
>>>>
>>>> What version of CMake are you using?
>>>>
>>>> Thanks for the the additional info,
>>>> Brad
>>>>
>>>> On Apr 29, 2013, at 8:13 AM, Martin Schober <m.schober at fz-juelich.de>
>>>> wrote:
>>>>
>>>>> I tried compiling ITK 4.3.2 with ITK python wrappers. I use gcc (GCC)
>>>>> 4.8.0 20130411 (prerelease) in arch-linux.
>>>>>
>>>>> The compilation aborts with the following error:
>>>>>
>>>>> [ 36%] Generating vcl_complex.xml
>>>>> gccxml_cc1plus: error: gccxml_builtins.h: No such file or directory
>>>>>
>>>>> Are there any ideas to fix this problem?
>>>>>
>>>>>
>>>>>
>>>>>
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>
> _____________________________________
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