[Insight-users] ITK 4.3.2 compilation with python wrappers: problem with gccxml
Martin Schober
m.schober at fz-juelich.de
Tue May 7 04:05:41 EDT 2013
Hello,
I use libc-2.17. Which version do you recommend or which one do you use?
Thanks
Martin
On 06.05.2013 21:15, Matt McCormick wrote:
> Hi Martin,
>
> The glibc package may be too new, also. What version do you have?
>
> Thanks,
> Matt
>
> On Tue, Apr 30, 2013 at 6:23 AM, Martin Schober <m.schober at fz-juelich.de> wrote:
>> Hello,
>>
>> I tried to compile with gcc 4.4.7 and gcc 4.6.4 In both cases I get this
>> error:
>>
>> [ 21%] Generating vcl_complex.xml
>> In file included from /usr/include/endian.h:60,
>> from /usr/include/ctype.h:40,
>> from
>> /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/cctype:44,
>> from
>> /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h:44,
>> from
>> /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/ios:42,
>> from
>> /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/ostream:40,
>> from
>> /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/iostream:40,
>> from
>> /localdata/martin/setup_files/InsightToolkit-4.3.2/Modules/Core/Common/include/itkSmartPointer.h:21,
>> from
>> /localdata/martin/setup_files/InsightToolkit-4.3.2/Modules/Core/Common/include/itkLightObject.h:21,
>> from
>> /localdata/martin/setup_files/InsightToolkit-4.3.2/Modules/Core/Common/include/itkObject.h:31,
>> from
>> /localdata/martin/setup_files/InsightToolkit-4.3.2/Modules/Core/Common/include/itkCommand.h:21,
>> from
>> /localdata/martin/setup_files/InsightToolkit-4.3.2/build/Wrapping/Modules/ITKCommon/vcl_complex.cxx:1:
>> /usr/include/bits/byteswap.h: In function 'unsigned int __bswap_32(unsigned
>> int)':
>> /usr/include/bits/byteswap.h:47: error: '__builtin_bswap32' was not declared
>> in this scope
>> /usr/include/bits/byteswap.h: In function '__uint64_t
>> __bswap_64(__uint64_t)':
>> /usr/include/bits/byteswap.h:111: error: '__builtin_bswap64' was not
>> declared in this scope
>> make[2]: *** [Wrapping/Modules/ITKCommon/vcl_complex.xml] Error 1
>> make[1]: *** [Wrapping/Modules/ITKCommon/CMakeFiles/ITKCommonGccXML.dir/all]
>> Error 2
>> make: *** [all] Error 2
>>
>>
>>
>> On 29.04.2013 15:55, Bradley Lowekamp wrote:
>>> Hello,
>>>
>>> I am able to build it on my Redhat 6 system with gcc 4.4.7 and gcc 4.7.2.
>>>
>>> I don't think gcc_xml support gcc 4.8.
>>>
>>> In my build directory I see files like the following:
>>>
>>>
>>> ITK-build/Wrapping/Generators/GccXML/gccxml/src/GCC_XML/GCC_XML/Support/GCC/4.?/gccxml_builtins.h
>>>
>>> Where the gcc version goes from 4.0 to 4.7.
>>>
>>> I believe that a freshly upgraded Arch Linux is close to the opposite
>>> side of the stability spectrum as Redhat. So you are quite on the bleeding
>>> edge of things. Are you up able to obtain an older compiler that has
>>> actually been officially release by gcc?
>>>
>>> Brad
>>>
>>> On Apr 29, 2013, at 9:40 AM, Martin Schober <m.schober at fz-juelich.de>
>>> wrote:
>>>
>>>> What is the gcc version you were able to compile itk with?
>>>>
>>>> My configuration options to build itk:
>>>> BUILD_EXAMPLES OFF
>>>> BUILD_SHARED_LIBS ON
>>>> BUILD_TESTING OFF
>>>> CMAKE_BUILD_TYPE Release
>>>> INSTALL_WRAP_ITK_COMPATIBILITY ON
>>>> ITKV3_COMPATIBILITY ON
>>>> ITK_BUILD_ALL_MODULES ON
>>>> ITK_USE_SYSTEM_SWIG OFF
>>>> ITK_WRAP_DIMS 2;3
>>>> ITK_WRAP_DOC OFF
>>>> ITK_WRAP_EXPLICIT OFF
>>>> ITK_WRAP_GCCXML ON
>>>> ITK_WRAP_JAVA OFF
>>>> ITK_WRAP_PERL OFF
>>>> ITK_WRAP_PYTHON ON
>>>> ITK_WRAP_RUBY OFF
>>>> ITK_WRAP_SWIGINTERFACE ON
>>>> ITK_WRAP_TCL OFF
>>>> ITK_WRAP_complex_double OFF
>>>> ITK_WRAP_complex_float OFF
>>>> ITK_WRAP_covariant_vector_doub OFF
>>>> ITK_WRAP_covariant_vector_floa OFF
>>>> ITK_WRAP_double OFF
>>>> ITK_WRAP_float ON
>>>> ITK_WRAP_rgb_unsigned_char ON
>>>> ITK_WRAP_rgb_unsigned_short OFF
>>>> ITK_WRAP_rgba_unsigned_char OFF
>>>> ITK_WRAP_rgba_unsigned_short OFF
>>>> ITK_WRAP_signed_char ON
>>>> ITK_WRAP_signed_long OFF
>>>> ITK_WRAP_signed_short OFF
>>>> ITK_WRAP_unsigned_char ON
>>>> ITK_WRAP_unsigned_long OFF
>>>> ITK_WRAP_unsigned_short OFF
>>>> ITK_WRAP_vector_double OFF
>>>> ITK_WRAP_vector_float ON
>>>>
>>>> I tried both versions of gccxml: system and itk built.
>>>> My gcc version is the system compiler. I installed it with pacman -S gcc
>>>> on arch-linux operation system.
>>>> My cmake version is 2.8.10.2
>>>>
>>>>
>>>> On 29.04.2013 15:14, Bradley Lowekamp wrote:
>>>>> Hello Martin,
>>>>>
>>>>> I was just able to build ITK with ITK_WRAP_PYTHON and shared libraries
>>>>> turned on without a problem from the master branch. You indicate that you
>>>>> are using a pre-release version of the compiler, so I am a little skeptical
>>>>> that the problem is with ITK.
>>>>>
>>>>> What configuration options did you set?
>>>>>
>>>>> Are you using the version of gcc_xml that get built with ITK?
>>>>>
>>>>> Is that pre-release version of gcc the system compiler? If you use the
>>>>> system compiler do you get the same error?
>>>>>
>>>>> What version of CMake are you using?
>>>>>
>>>>> Thanks for the the additional info,
>>>>> Brad
>>>>>
>>>>> On Apr 29, 2013, at 8:13 AM, Martin Schober <m.schober at fz-juelich.de>
>>>>> wrote:
>>>>>
>>>>>> I tried compiling ITK 4.3.2 with ITK python wrappers. I use gcc (GCC)
>>>>>> 4.8.0 20130411 (prerelease) in arch-linux.
>>>>>>
>>>>>> The compilation aborts with the following error:
>>>>>>
>>>>>> [ 36%] Generating vcl_complex.xml
>>>>>> gccxml_cc1plus: error: gccxml_builtins.h: No such file or directory
>>>>>>
>>>>>> Are there any ideas to fix this problem?
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> ------------------------------------------------------------------------------------------------
>>>>>>
>>>>>> ------------------------------------------------------------------------------------------------
>>>>>> Forschungszentrum Juelich GmbH
>>>>>> 52425 Juelich
>>>>>> Sitz der Gesellschaft: Juelich
>>>>>> Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
>>>>>> Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher
>>>>>> Geschaeftsfuehrung: Prof. Dr. Achim Bachem (Vorsitzender),
>>>>>> Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt,
>>>>>> Prof. Dr. Sebastian M. Schmidt
>>>>>>
>>>>>> ------------------------------------------------------------------------------------------------
>>>>>>
>>>>>> ------------------------------------------------------------------------------------------------
>>>>>> _____________________________________
>>>>>> Powered by www.kitware.com
>>>>>>
>>>>>> Visit other Kitware open-source projects at
>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>
>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>> http://www.kitware.com/products/protraining.php
>>>>>>
>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>
>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>> http://www.itk.org/mailman/listinfo/insight-users
>>
>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://www.itk.org/mailman/listinfo/insight-users
More information about the Insight-users
mailing list