[Insight-users] ITK 4.3.2 compilation with python wrappers: problem with gccxml
Matt McCormick
matt.mccormick at kitware.com
Tue May 7 12:35:15 EDT 2013
Hi Martin,
I have glibc-2.15.
We are attempting to maintain a WrapITK compatiblity table here:
http://www.itk.org/Wiki/ITK/WrapITK_Status
Thanks,
Matt
On Tue, May 7, 2013 at 8:05 AM, Martin Schober <m.schober at fz-juelich.de> wrote:
> Hello,
>
> I use libc-2.17. Which version do you recommend or which one do you use?
>
> Thanks
> Martin
>
>
> On 06.05.2013 21:15, Matt McCormick wrote:
>>
>> Hi Martin,
>>
>> The glibc package may be too new, also. What version do you have?
>>
>> Thanks,
>> Matt
>>
>> On Tue, Apr 30, 2013 at 6:23 AM, Martin Schober <m.schober at fz-juelich.de>
>> wrote:
>>>
>>> Hello,
>>>
>>> I tried to compile with gcc 4.4.7 and gcc 4.6.4 In both cases I get this
>>> error:
>>>
>>> [ 21%] Generating vcl_complex.xml
>>> In file included from /usr/include/endian.h:60,
>>> from /usr/include/ctype.h:40,
>>> from
>>>
>>> /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/cctype:44,
>>> from
>>>
>>> /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h:44,
>>> from
>>>
>>> /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/ios:42,
>>> from
>>>
>>> /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/ostream:40,
>>> from
>>>
>>> /usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/iostream:40,
>>> from
>>>
>>> /localdata/martin/setup_files/InsightToolkit-4.3.2/Modules/Core/Common/include/itkSmartPointer.h:21,
>>> from
>>>
>>> /localdata/martin/setup_files/InsightToolkit-4.3.2/Modules/Core/Common/include/itkLightObject.h:21,
>>> from
>>>
>>> /localdata/martin/setup_files/InsightToolkit-4.3.2/Modules/Core/Common/include/itkObject.h:31,
>>> from
>>>
>>> /localdata/martin/setup_files/InsightToolkit-4.3.2/Modules/Core/Common/include/itkCommand.h:21,
>>> from
>>>
>>> /localdata/martin/setup_files/InsightToolkit-4.3.2/build/Wrapping/Modules/ITKCommon/vcl_complex.cxx:1:
>>> /usr/include/bits/byteswap.h: In function 'unsigned int
>>> __bswap_32(unsigned
>>> int)':
>>> /usr/include/bits/byteswap.h:47: error: '__builtin_bswap32' was not
>>> declared
>>> in this scope
>>> /usr/include/bits/byteswap.h: In function '__uint64_t
>>> __bswap_64(__uint64_t)':
>>> /usr/include/bits/byteswap.h:111: error: '__builtin_bswap64' was not
>>> declared in this scope
>>> make[2]: *** [Wrapping/Modules/ITKCommon/vcl_complex.xml] Error 1
>>> make[1]: ***
>>> [Wrapping/Modules/ITKCommon/CMakeFiles/ITKCommonGccXML.dir/all]
>>> Error 2
>>> make: *** [all] Error 2
>>>
>>>
>>>
>>> On 29.04.2013 15:55, Bradley Lowekamp wrote:
>>>>
>>>> Hello,
>>>>
>>>> I am able to build it on my Redhat 6 system with gcc 4.4.7 and gcc
>>>> 4.7.2.
>>>>
>>>> I don't think gcc_xml support gcc 4.8.
>>>>
>>>> In my build directory I see files like the following:
>>>>
>>>>
>>>>
>>>> ITK-build/Wrapping/Generators/GccXML/gccxml/src/GCC_XML/GCC_XML/Support/GCC/4.?/gccxml_builtins.h
>>>>
>>>> Where the gcc version goes from 4.0 to 4.7.
>>>>
>>>> I believe that a freshly upgraded Arch Linux is close to the opposite
>>>> side of the stability spectrum as Redhat. So you are quite on the
>>>> bleeding
>>>> edge of things. Are you up able to obtain an older compiler that has
>>>> actually been officially release by gcc?
>>>>
>>>> Brad
>>>>
>>>> On Apr 29, 2013, at 9:40 AM, Martin Schober <m.schober at fz-juelich.de>
>>>> wrote:
>>>>
>>>>> What is the gcc version you were able to compile itk with?
>>>>>
>>>>> My configuration options to build itk:
>>>>> BUILD_EXAMPLES OFF
>>>>> BUILD_SHARED_LIBS ON
>>>>> BUILD_TESTING OFF
>>>>> CMAKE_BUILD_TYPE Release
>>>>> INSTALL_WRAP_ITK_COMPATIBILITY ON
>>>>> ITKV3_COMPATIBILITY ON
>>>>> ITK_BUILD_ALL_MODULES ON
>>>>> ITK_USE_SYSTEM_SWIG OFF
>>>>> ITK_WRAP_DIMS 2;3
>>>>> ITK_WRAP_DOC OFF
>>>>> ITK_WRAP_EXPLICIT OFF
>>>>> ITK_WRAP_GCCXML ON
>>>>> ITK_WRAP_JAVA OFF
>>>>> ITK_WRAP_PERL OFF
>>>>> ITK_WRAP_PYTHON ON
>>>>> ITK_WRAP_RUBY OFF
>>>>> ITK_WRAP_SWIGINTERFACE ON
>>>>> ITK_WRAP_TCL OFF
>>>>> ITK_WRAP_complex_double OFF
>>>>> ITK_WRAP_complex_float OFF
>>>>> ITK_WRAP_covariant_vector_doub OFF
>>>>> ITK_WRAP_covariant_vector_floa OFF
>>>>> ITK_WRAP_double OFF
>>>>> ITK_WRAP_float ON
>>>>> ITK_WRAP_rgb_unsigned_char ON
>>>>> ITK_WRAP_rgb_unsigned_short OFF
>>>>> ITK_WRAP_rgba_unsigned_char OFF
>>>>> ITK_WRAP_rgba_unsigned_short OFF
>>>>> ITK_WRAP_signed_char ON
>>>>> ITK_WRAP_signed_long OFF
>>>>> ITK_WRAP_signed_short OFF
>>>>> ITK_WRAP_unsigned_char ON
>>>>> ITK_WRAP_unsigned_long OFF
>>>>> ITK_WRAP_unsigned_short OFF
>>>>> ITK_WRAP_vector_double OFF
>>>>> ITK_WRAP_vector_float ON
>>>>>
>>>>> I tried both versions of gccxml: system and itk built.
>>>>> My gcc version is the system compiler. I installed it with pacman -S
>>>>> gcc
>>>>> on arch-linux operation system.
>>>>> My cmake version is 2.8.10.2
>>>>>
>>>>>
>>>>> On 29.04.2013 15:14, Bradley Lowekamp wrote:
>>>>>>
>>>>>> Hello Martin,
>>>>>>
>>>>>> I was just able to build ITK with ITK_WRAP_PYTHON and shared libraries
>>>>>> turned on without a problem from the master branch. You indicate that
>>>>>> you
>>>>>> are using a pre-release version of the compiler, so I am a little
>>>>>> skeptical
>>>>>> that the problem is with ITK.
>>>>>>
>>>>>> What configuration options did you set?
>>>>>>
>>>>>> Are you using the version of gcc_xml that get built with ITK?
>>>>>>
>>>>>> Is that pre-release version of gcc the system compiler? If you use the
>>>>>> system compiler do you get the same error?
>>>>>>
>>>>>> What version of CMake are you using?
>>>>>>
>>>>>> Thanks for the the additional info,
>>>>>> Brad
>>>>>>
>>>>>> On Apr 29, 2013, at 8:13 AM, Martin Schober <m.schober at fz-juelich.de>
>>>>>> wrote:
>>>>>>
>>>>>>> I tried compiling ITK 4.3.2 with ITK python wrappers. I use gcc (GCC)
>>>>>>> 4.8.0 20130411 (prerelease) in arch-linux.
>>>>>>>
>>>>>>> The compilation aborts with the following error:
>>>>>>>
>>>>>>> [ 36%] Generating vcl_complex.xml
>>>>>>> gccxml_cc1plus: error: gccxml_builtins.h: No such file or directory
>>>>>>>
>>>>>>> Are there any ideas to fix this problem?
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
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