[Insight-users] [ITK Community] can't build bridge

[Matt McCormick]

Hi Chengjia,

+1 to Tim's comment.  Good to hear you are making progress :-).

There is a little VXL build documentation on the wiki [1], although I
have not tried it recently.

InsightApplications is easiest to build as a Superbuild by pointing
CMake to the "Superbuild" directory in the initial configuration.

Hope this helps,
Matt

[1] http://www.cmake.org/Wiki/ITK_Release_4/Video/HowToBuildVideoModules

On Wed, Feb 5, 2014 at 7:28 PM, WANG Chengjia
<wangchengjia1986 at gmail.com> wrote:
> Hi Matt,
>
> Thank you very much!
>
> And how can I fix the error "vxl version too old"?
>
> I finally make/installed itk/vtk/opencv/vxl1.17 but I still can't make the
> InsightApplications. And I'm now using itk4.5
>
> Thank you very much!
>
> Best,
>
>
> On Wed, Feb 5, 2014 at 5:30 AM, Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> Hi Chengija,
>>
>> Welcome to ITK!
>>
>> There are many opportunities to improve the ITK python wrapping,
>> including a number of warnings.
>>
>> Make sure to use the latest version of ITK for the best DCMTK support.
>>  Try turning OFF USE_SYSTEM_DCMTK if trouble persists.
>>
>> Wrapping is not yet available for the OpenCV bridge yet.  It could be
>> added [1] (see the "wrapping" directory of other modules).  The
>> quickest route, though, is to use SimpleITK (easy_install SimpleITK),
>> then use SimpleITK.GetArrayFromImage() to get the NumPy array, then
>> import the NumPy array into OpenCV.
>>
>> Thanks,
>> Matt
>>
>> [1]
>> http://insightsoftwareconsortium.github.io/ITKBarCamp-doc/CommunitySoftwareProcess/SubmitAPatchToGerrit/index.html
>>
>> On Tue, Feb 4, 2014 at 10:48 PM, WANG Chengjia
>> <wangchengjia1986 at gmail.com> wrote:
>> > Hi,
>> >
>> > I must started using itk. So apologize if I asked stupid questions.
>> >
>> > I want to build ITK with itkOpenCVBridge enabled because I have an
>> > urgent
>> > project which requires cascade training, neural network and 3D image
>> > transformations/feature detections. And I want it work with python wrap
>> > as I
>> > want to create 3DSlicer scripts (while 3DSlicer is lack of documents and
>> > adequate debugging tools).
>> >
>> > but I kept receiving error/warnings during the configure/generate/make
>> > process. Any modules related swig, itkvtkglue, dcmtk, vxl can't be built
>> > (but I have already installed the newest version of these pacs/libs in
>> > ubuntu, the cmake just say that vxl version is too old, can't find
>> > DCMTK_LIBRARIES no matter how I set the paths). So I just disabled these
>> > items in cmake.
>> >
>> > Then I received some errors/warnings in make process, such as the
>> > following
>> > one:
>> >
>> >
>> > home/ivjia/itk/InsightToolkit-4.4.2/bin/Wrapping/Modules/ITKStatistics/itkHistogramToIntensityImageFilterPython.cpp:
>> > In function 'void SWIG_InitializeModule(void*)':
>> >
>> > /home/ivjia/itk/InsightToolkit-4.4.2/bin/Wrapping/Modules/ITKStatistics/itkHistogramToIntensityImageFilterPython.cpp:13566:21:
>> > warning: statement has no effect [-Wunused-value]
>> > [ 72%] Building CXX object
>> >
>> > Modules/Nonunit/Review/test/CMakeFiles/ITKReviewTestDriver.dir/itkScalarChanAndVeseSparseLevelSetImageFilterTest1.cxx.o
>> > [ 72%] Generating itkCenteredSimilarity2DTransformPython.cpp,
>> > ../../../lib/itkCenteredSimilarity2DTransformPython.py
>> >
>> > How can I bulid itk with all these properties enabled?
>> >
>> > Thank you very much!
>> >
>> > Best,
>> >
>> > --
>> > Chengjia Wang
>> > Phd Student,
>> > University of Edinburgh
>> > Clinical Research Imaging Center (CRIC)
>> > Toshiba Medical Visualization Systems Europe, Ltd
>> > Email: wangchengjia1986 at gmail.com
>> >
>> > _____________________________________
>> > Powered by www.kitware.com
>> >
>> > Visit other Kitware open-source projects at
>> > http://www.kitware.com/opensource/opensource.html
>> >
>> > Kitware offers ITK Training Courses, for more information visit:
>> > http://www.kitware.com/products/protraining.php
>> >
>> > Please keep messages on-topic and check the ITK FAQ at:
>> > http://www.itk.org/Wiki/ITK_FAQ
>> >
>> > Follow this link to subscribe/unsubscribe:
>> > http://www.itk.org/mailman/listinfo/insight-users
>> >
>> > _______________________________________________
>> > Community mailing list
>> > Community at itk.org
>> > http://public.kitware.com/cgi-bin/mailman/listinfo/community
>> >
>
>
>
>
> --
> Chengjia Wang
> Phd Student,
> University of Edinburgh
> Clinical Research Imaging Center (CRIC)
> Toshiba Medical Visualization Systems Europe, Ltd
> Email: wangchengjia1986 at gmail.com