[ITK-users] [ANN] ITK 4.11 Release Candidate 1 is ready for testing!
Matt McCormick
matt.mccormick at kitware.com
Thu Jan 12 11:54:52 EST 2017
Hello Brad,
Good point. I added a comment in the release notes.
Thanks,
Matt
On Thu, Jan 12, 2017 at 11:19 AM, Lowekamp, Bradley (NIH/NLM/LHC) [C]
<blowekamp at mail.nih.gov> wrote:
> Hello,
>
> An additional bug fix that may have impact on registration is this one:
> https://github.com/InsightSoftwareConsortium/ITK/commit/99a7ac8f3ab88cdc508084e4921f0f4c9678468b
>
> The ITKv4 parameter estimators where using an incorrect algorithm for “affine” or “linear” transforms. The previous incorrect algorithm used random samples, which produced unstable parameter scales. Because of the change to the wall clock initialized random generator, I have found that many registrations were overly sensitive to these random estimated scale. The correction to fixed corner based sampling should produce stable and reproducible results moving forward.
>
> Brad
>
>> On Jan 9, 2017, at 8:08 PM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>>
>> On behalf of the Insight Toolkit community, we are proud to announce
>> that ITK 4.11 release candidate 1 has been tagged and is available for
>> testing! Please take this opportunity to test the new features in the
>> release candidate.
>>
>>
>> To obtain the source code,
>>
>> git clone https://itk.org/ITK.git
>> cd ITK
>> git checkout -q --detach v4.11rc01
>>
>> For more details, please see the Git documentation [1].
>>
>>
>> A few selected highlights for this release:
>>
>>
>> - Remote Modules were added to: perturb mesh vertices with additive
>> gaussian noise, accurately benchmark computational performance,
>> perform principal components analysis of scalar, vector, and mesh
>> vertex data, create a run-length encoded memory compression scheme for
>> itk::Image, run N-D morphological contour interpolation, interpolate
>> multi-label images, iterate over multiple images simultaneously, and
>> compute inverse displacement fields.
>> - NumPy bridge support is now enabled by default with NumPy array
>> views of multi-component images and VNL vectors and matrices.
>> - Internal HDF5 was updated to the latest upstream version along
>> with a number of other third-party libraries.
>>
>>
>> This release introduces a new template class export specification
>> macro, ITK_TEMPLATE_EXPORT. The macro should be used with templated
>> classes to address failing dynamic_cast's and exception catching
>> across binaries on Mac OSX.
>>
>> Bugs were addressed and improvements were made to how the
>> pseudo-random number generator is used. Tests that rely on the random
>> number generator should explicitly set the global seed at start:
>>
>> itk::Statistics::MersenneTwisterRandomVariateGenerator::GetInstance()->SetSeed(
>> 121212 );
>>
>> To improve randomness, new instances of the generator start from a
>> different seed; some minor differences in the output of algorithms
>> that uses the generator, like mutual information metrics, should be
>> expected.
>>
>>
>> Please test the release candidate and share your experiences on the
>> mailing list, issue tracker, and Gerrit Code Review.
>>
>> An Experimental build, which demonstrates how the test suite performs
>> on your local build system, can be submitted to the dashboard [2]
>> with:
>>
>> mkdir ../ITK-build
>> cd ../ITK-build
>> cmake ../ITK
>> ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit
>>
>> Visual Studio builds must also add “-C Release” to the ctest command.
>>
>> Notify the mailing list if there are any unexpected failures. Testing
>> your own applications against the RC is also appreciated.
>>
>>
>> Congratulations to the 31 contributors to this release. We would
>> especially like to recognize the new contributors: Hastings Greer,
>> Gilles Filippini, Thien Nguyen, Caspar Goch, Mayeul Chassagnard,
>> Somesh Kashyap, Simon Rit, Pierre Barbier de Reuille, and Maeliss
>> Jallais.
>>
>>
>> The 4.11.0 final release is scheduled for January 23rd.
>>
>>
>> [1] http://www.itk.org/Wiki/ITK/Git
>>
>> [2] http://open.cdash.org/index.php?project=Insight
>>
>>
>> New Features
>> ------------
>>
>> * Wrapping Improvements
>> - Python GetArrayFromImage() and GetImageFromArray() from
>> ITKBridgeNumPy are directly accessible from the Python itk namespace.
>> - The itk package loads much faster: individual modules are loaded
>> only when required.
>> - Conversion of ITK images from and to NumPy array using Bridge
>> NumPy supports RGB, RGBA, and Vector images.
>> - VNL vectors and VNL matrices can be converted from and to NumPy
>> objects with respectively the new couple of functions
>> GetArrayFromVnlVector()/GetVnlVectorFromArray() and
>> GetArrayFromVnlMatrix()/GetVnlMatrixFromArray()
>> - The global timestamp is used across all ITK Python modules when
>> built statically
>> - Wrap additional classes such as KernelFunctionBase
>> - itk_python_add_test CMake function added for Python script testing
>> in ITK modules
>>
>> * New Remote Modules
>> - DVMeshNoise
>> - Perturbing mesh vertices with additive gaussian noise
>> - http://hdl.handle.net/10380/3567
>> - PerformanceBenchmarking
>> - Accurate benchmarking of computational performance
>> - http://hdl.handle.net/10380/3557
>> - PrincipalComponentsAnalysis
>> - Principal components analysis of scalar, vector, and mesh vertex data
>> - http://hdl.handle.net/10380/3386
>> - RLEImage
>> - Run-length encoded memory compression scheme for itk::Image
>> - http://hdl.handle.net/10380/3562
>> - MorphologicalContourInterpolation
>> - N-D morphological contour interpolation
>> - http://hdl.handle.net/10380/3563
>> - GenericLabelInterpolator
>> - A generic interpolator for multi-label images
>> - http://hdl.handle.net/10380/3506
>> - MultipleImageIterator
>> - Iterate over multiple images simultaneously
>> - http://hdl.handle.net/10380/3455
>> - FixedPointInverseDisplacementField
>> - Computes inverse displacement field
>> - http://hdl.handle.net/10380/3222
>>
>> * Core Improvements
>> - New ITK_TEMPLATE_EXPORT for templated classes resolves
>> cross-binary dynamic_cast on Mac OSX
>> - New MersenneTwisterRandomVariateGenerator instances are
>> initialized with different seeds
>> - Use compiler feature detection in CMake for C++11 features, etc.
>> - New CMake macro itk_module_add_library for creating libraries in ITK modules
>> - Improved support for ccache and distcc with
>> CMAKE_<LANG>_COMPILER_LAUNCHER (CMake >=3.4 required)
>> - Support for .sha512 ExternalData content links
>> - GitHub Pages and data.kitware.com ExternalData repositories added
>> - GPGPU system support for C++11
>> - Support of new compilers: Visual Studio 15 and XCode 8.2.1
>> (clang-800.0.42.1)
>>
>> * Filtering Improvements
>> - HessianToObjectnessMeasure moved out of the ITKReview module
>> - New UnsharpMaskImageFilter for image edge enhancement
>>
>> * IO Improvements
>> - TransformFactory class has been moved to a separate module
>> - Spline order added to BSplineTransform identifier
>> - Improved NIFTI orientation support
>>
>> * Documentation Improvements
>> - Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
>>
>> * Third Party Library Updates
>> - pygccxml updated to v1.8.0
>> - VNL updated to latest upstream (2016.07.06)
>> - SWIG updated to v3.0.11
>> - KWSys updated to latest upstream (2016.11.21)
>> - HDF5 updated to v1.8.17
>> - SCIFIO updated to latest upstream (2016.12.01)
>> - DCMTK updated to 3.6.1_20121012
>> - CastXML to latest upstream (2016.01.28)
>>
>> * Improved Code Coverage -- we are at 85.44%!
>> - Jon Haitz-Legarreta's extensive code coverage improvements
>> - https://blog.kitware.com/why-should-we-spend-time-writing-tests/
>>
>> * *Lots* of important bug fixes
>>
>> * And much more! See details in the log below.
>>
>>
>> Changes from v4.10.0 to v4.11rc01
>> ------------------------------------------------
>>
>> Bill Lorensen (4):
>> COMP: Restore support for clang 3.0 compiler
>> COMP: Consistent use of ModifiedTimeType
>> ENH: Bump WikiExamples remote module version
>> ENH: Bump WikiExamples version
>>
>> Bradley Lowekamp (57):
>> ENH: Add registered TrasformIO's to exception
>> ENH: Use template or constant for loop stop condition
>> ENH: Updating SWIG version to 3.0.9
>> COMP: Address VS9 ambiguous std::abs call in Haung calculator
>> COMP: Fix undefined NumericTraits::Zero and One errors with mingw64
>> BUG: Fix segfault if ~CleanUpObjectFactory called multiple times
>> BUG: Address itkHDF5ImageIO test failures for mingw64
>> BUG: demonstrate dynamic_cast failure when reading transforms
>> BUG: Address itkHDF5ImageIO test failures for mingw64
>> ENH: Updating SWIG version to 3.0.10
>> ENH: Enable CMP0063 New behavior
>> COMP: Enable hidden visibility property with vxl static libraries
>> COMP: Enable hidden visibility property with HDF5 static libraries
>> COMP: Enable hidden visibility property with HDF5 static libraries
>> BUG: Match Add2 function to AddImageFilter documentation
>> ENH: Improve support for std::complex with PowImageFilter
>> ENH: Explicitly mark required files for dependent tests
>> COMP: Bypass XCode 7.3,8 internal compilation error
>> COMP: Address CMake configuration error with itkJPEG2000Test03 property
>> BUG: Correct test's REQUIRED_FILES to only the input.
>> ENH: move HessianToObjectnessMeasure filter out of Review
>> ENH: Separate TransformFactory class into separate module
>> DOC: Add links between similar label to rgb filters
>> ENH: Separate data from function calls
>> COMP: Fix changed Graft method
>> ENH: Reduce template dependencies on CalculateRotationMatrix
>> ENH: Add Functor Accessors to LabelMapToRGB filter
>> BUG: Enable VirtualDomain and FixedTransform in RegMethv4
>> BUG: Use BSpline Order 3 for 2D in transform factory.
>> ENH: Add spline order to BSplineTransform's string id
>> ENH: Adding initial CircleCi configuration file
>> COMP: Fix float to unsigned integer conversion warnings
>> BUG: Include installed modules in ITK_MODULES_ENABLED
>> COMP: Address CMake error that ITKGPUCommon is not in export
>> COMP: Address wrong library types with VS and shared libraries
>> BUG: Ensure CreateImageIO is concurrent thread safe
>> ENH: Mark HDF5 CMake options as internal
>> COMP: Add template export declaration for ParametricPath
>> COMP: Correct TEMPLATE_EXPLICIT definition in Path module
>> ENH: Factor out common code in the TrasformFactoryBase registration
>> ENH: Add CMake variable for max transform dimension, defaults 4
>> ENH: Create CMake module to check for private RTTI compatibility
>> ENH: Improving setting of default ITK_TEMPATE_VISIBILITY_DEFAULT
>> COMP: Correct ifndef value to allow user defined ITK_TEMPLATE_EXPORT
>> BUG: Add explicit instantiate for ObjectToObjectOptimizerBase
>> COMP: Use add_definitions for CMake 2.8.9 compatibility
>> COMP: Add warning suppression for distcc warning
>> ENH: Explicitly instantiate the optimizer base over float
>> BUG: Use IsLinear to check if transform is "affine"
>> ENH: Remove unneeded includes of random iterator header
>> ENH: Improve thread-safety for Generator, and unique New sequence
>> ENH: Do not use global random generator
>> BUG: Update v3 registration metrics to use local seed
>> ENH: Prefer setting local seed over global in tests.
>> ENH: Update SWIG to latest 3.0.11 release
>> BUG: relax testing parameters for v3 translation registration
>> BUG: Restore baseline for debug registration
>>
>> Caspar Goch (2):
>> BUG: Use printable type for RGBA pixel ostream for ITK-3501
>> STYLE: Remove extra space for ITK-3501
>>
>> Christina Rossmanith (1):
>> DOC: Added more details to the class Doxygen documentation.
>>
>> Davis Vigneault (2):
>> COMP: VCL_DEFINE_SPECIALIZATION not defined
>> ENH: Add remote module DVMeshNoise
>>
>> Dženan Zukić (27):
>> BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES)
>> ENH: Adding MultipleImageIterator as a remote module
>> COMP: enables TBB 4.4 back-end for VTK7's SMP
>> COMP: enabling position independent code flag for FFTW
>> ENH: adding configuration file for code reformatting tool clang-format
>> ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3
>> COMP: Fixing -fPIC flag passing with Ninja build system
>> ENH: Adding RLEImage as a remote module
>> ENH: Updating uncrustify configuration to current git version
>> STYLE: better compliance with ITK style
>> STYLE: A new option in uncrustify, updating the config file accordingly
>> ENH: Adding MorphologicalContourInterpolation as a remote module
>> ENH: improving documentation
>> BUG: fixing buffer growing endlessly, as reported by Timothee Evain
>> BUG: fixing buffer growing endlessly, as reported by Timothee Evain
>> STYLE: default uncrustify configuration file is less aggressive
>> COMP: Fixing warning
>> COMP: VS15 compiler fix
>> BUG: casting -9 to unsigned produced unwanted result
>> BUG: Ensuring consistency between debug and release
>> COMP: Updating LesionSizingToolkit after some recent compile fixes
>> COMP: respect option METAIO_USE_NAMESPACE
>> ENH: updating version of AnisotropicDiffusionLBR
>> ENH: adding UnsharpMaskingImageFilter
>> COMP: explicitly cast to output type
>> BUG: double call to update would cause empty output image
>> ENH: Updating RLEImage remote module. Change-log:
>>
>> Eugene Prilepin (4):
>> ENH: Add the "ITK_USE_GPU" to ITK Config
>> BUG: Fix API for set/get "LaplacianImageFilter" object
>> ENH: Add support of images types with the 'CovariantVector' pixel type
>> ENH: Add python test for the 'GradientVectorFlowImageFilter' wrap
>>
>> Francois Budin (52):
>> ENH: Adding GetArrayFromImage in python itk namespace
>> ENH: Adding GetImageFromArray in python itk namespace
>> ENH: *_WRAP_* variable per external module
>> BUG: ImportImageFilter not responsible of memory management
>> ENH: New remote module GenericLabelInterpolator
>> DOC: SetNumberOfOutputs had wrong comment
>> BUG: lazyAttributes dictionary keys could be over-ridden
>> BUG: lazyAttributes dictionary keys could be over-ridden
>> BUG: Fix recent update of HDF5 (1.8.17)
>> ENH: Update SCIFIO to latest version on 08/23/2016
>> ENH: Addition of the remote module FixedPointInverseDisplacementField
>> ENH: Update SCIFIO to latest version on 08/29/2016
>> BUG: Path to commit was relative instead of absolute
>> ENH: Path to SetupForDevelopment is relative, not absolute
>> BUG: LSMImageIO write function was not checking image dimension
>> BUG: LSMImageIO was not checking correctly image dimension
>> BUG: Missing associated test data
>> BUG: Missing associated test data
>> ENH: Bump CMakeLists.txt version to 4.10.1.
>> BUG: Quotes are not escaped in configured cmake file
>> ENH: Improving API of Graft() in itk::Image
>> ENH: Updating ITKGenericLabelInterpolator remote module
>> ENH: Update ITKIOTransformDCMTK remote module
>> BUG: Factory registration should depend on ITK_BUILD_SHARED
>> COMP: Updating DCMTK compilation for Ninja
>> ENH: Update version of DCMTK to 3.6.1_20121012
>> ENH: Update SCIFIO to latest version on 10/25/2016
>> BUG: Swig and PCRE do not support space in installation paths
>> BUG: exit() call from within piped commands was not exiting the script
>> BUG: Typo in folder creation command
>> ENH: Only display message for transform registered multiple times in debug
>> ENH: Image spacing must be positive
>> BUG: Supported extensions by PNG IO were not added in constructor.
>> DOC: Documentation in itkRBGAPixel and itkRGBPixel was incorrect.
>> ENH: Update SCIFIO to lastest (2016.12.01)
>> ENH: FixedPointInverseDisplacementField moved to InsightSoftwareConsortium
>> COMP: Remove compilation warnings
>> ENH: Improved support of ccache and distcc
>> BUG: GPUImage regression due to API change.
>> ENH: Update Bridge Numpy (2016.12.05)
>> ENH: Update VariationalRegistration to remove warnings during compilation
>> ENH: FindPythonLibs does not support both debug and release
>> python libraries
>> ENH: Update VariationalRegistration
>> BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of itk::ImageBase
>> BUG: Missing ITK_TEMPLATE_EXPORT in itkOptimizerParametersHelper
>> BUG: Missing ITK_TEMPLATE_EXPORT in templated class
>> BUG: Remove linkage warnings on MacOS
>> BUG: HDF5 CMake installation directory variable had not been updated
>> BUG: Missing include header in AnisotropicDiffusionBLR remote
>> module hxx files
>> COMP: Silencing unused variable warning in itkTimeStamp
>> STYLE: Improve style checking by using module ITKKWStyleOverwrite.txt
>> COMP: OS*Barrier functions are deprecated on MacOS 10.12
>>
>> GCC-XML Upstream (1):
>> ENH: pygccxml v1.8.0 (reduced)
>>
>> Gert Wollny (1):
>> BUG: Relax vnl_complex floating point comparisons for i386
>>
>> Gilles Filippini (1):
>> BUG: Use NATIVE_HBOOL for encoding HDF5 types.
>>
>> HDF Group (1):
>> ENH: hdf5 1.8.17-r30218 (reduced)
>>
>> Hans Johnson (23):
>> COMP: Use cmake WriteCompilerDetectionHeader
>> ENH: Use itk_compiler_detection versions
>> COMP: Need ITK_NOEXCEPT_OR_THROW macro.
>> COMP: Provide consistent granular C++11 support
>> STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT
>> STYLE: Prefer to use consistent definitions
>> COMP: Improve robustness of identifying the compiler standard used
>> BUG: try_compile for AlignAs were always failing
>> STYLE: Provide a well documented macro for repeated code
>> STYLE: Delete functions in consistent way
>> COMP: GPU baseclass ivars need to be protected
>> COMP: Remove unnecessary circular dependancy
>> COMP: Add long long usage for HDF5
>> COMP: Add long long usage for HDF5
>> STYLE: Prefer static small array to dynamic array
>> BUG: Confusing interface for FFTW wisdom files
>> STYLE: Output dimension from OutputImageType
>> STYLE: Code review style cleanups
>> STYLE: Prefer to use ITK AssertOrThrow macros
>> ENH: Add OverrideBoundaryCondition logic
>> ENH: Provide mechanism for enhanced NIFTI support
>> BUG: Use NIFTI sform/qform conventions correctly
>> ENH: Remove ambiguity about sform/qform
>>
>> Hastings Greer (8):
>> BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically
>> BUG: make itkTriangleHelper instantiable to ease wrapping
>> BUG: remove lsqr because of license issues ITK 1160
>> BUG: make itkTriangleHelper instantiable to ease wrapping
>> BUG: initialize X to zero in lsmr Solve
>> BUG: Labled Point Set Registration: test multiple labels
>> BUG: Fix python wrapping of Cuberille remote module
>> BUG: Add test demonstrating Python global timestamp issue
>>
>> Jean-Christophe Fillion-Robin (5):
>> STYLE: UseITK: Set ImageIO exceptions using new convention. See #3393
>> STYLE: MeshIO: Moves virtual destructor into cpp files. See #3393
>> STYLE: Update MeshIO factories to use RegisterFactoryInternal. See #3393
>> STYLE: MeshIO: Move MeshFileWriterException into its own file. See #3393
>> STYLE: MeshIO: Remove unused include from headers. See #3393
>>
>> Johan Andruejol (3):
>> ENH: Add missing itkKernelFunctionBase wrapping
>> ENH: Add PrincipalComponentsAnalysis remote module
>> COMP: Override cannot be used with inline
>>
>> Jon Haitz Legarreta (216):
>> ENH: Improve itkFlatStructutingElement coverage.
>> ENH: Improve itkPathToImageFilter class coverage.
>> ENH: Improve itkIsolatedWatershedImageFilter coverage.
>> ENH: Improve itkLogSigmoidTransferFunction coverage.
>> STYLE: Improve itkBSplineTransform doc style.
>> ENH: Improve GaborKernelFunctionCoverage.
>> PERF: Remove duplicate itkMath include
>> STYLE: Move the PrintSelf method to the end
>> STYLE: Improve the itkScalarToRGBColormapImageFilter style.
>> STYLE: Delete duplicate method documentation
>> STYLE: Remove method documentation from implementation file
>> STYLE: Improve GACLevelSet classes' style
>> STYLE: Improve test style
>> ENH: Improve itkGaussianDerivativeImageFilter coverage.
>> ENH: Improve the itkScalarToRGBColormapImageFilter coverage
>> STYLE: Improve itkScalarToRGBColormap test style
>> ENH: Improve GACLSImageFilter classes' coverage
>> STYLE: Improve comment style in GACLS tests
>> ENH: Improve itkImportImageFilter coverage
>> ENH: Improve itkVideoFileReader coverage
>> ENH: Improve itkVideoFileWriter coverage
>> STYLE: Improve the itkVideoFileWriter style.
>> STYLE: Imrpove itkVideoFileReader style.
>> ENH: Improve the itkBSplineControlPointImageFunction coverage
>> STYLE: Improve the itkIntensityWindowingImageFilter style
>> STYLE: Improve the itkIntensityWindowingImageFilter test style
>> ENH: Improve ImageToSpatialObjectRegistrationMethod coverage
>> STYLE: Improve test style
>> ENH: Improve MaskNeighborhoodOperatorImageFilter coverage
>> ENH: Improve itkMeshFileWriter coverage
>> ENH: Improve RescaleIntensityImageFilter coverage.
>> ENH: Improve itkClampImageFilter coverage.
>> BUG: Fix ivar type casting in PrintSelf.
>> STYLE: Improve MRIBiasFieldCorrectionFilter style.
>> ENH: Improve MRIBiasFieldCorrectionFilter coverage.
>> ENH: Improve itkIntensityWindowingImageFilter coverage
>> BUG: Fix Run-time type information in CSV module classes.
>> ENH: Improve the itkHistogram class code coverage.
>> DOC: Fix documentation typo.
>> STYLE: Improve the ImproveRescaleIntensityImageFilter style.
>> PERF: Make the itkVideoFileReader ivars private
>> PERF: Make itkVideoFileWriter ivars private
>> ENH: Improve coverage for itk::OrientImageFilter.
>> STYLE: Improve itk::OrientImageFilter class style.
>> ENH: Improve itkCSVNumericObjectFileWriter coverage.
>> ENH: Add missing standard class typdefs.
>> ENH: Improve itkVoronoiSegmentationImageFilter coverage.
>> ENH: Improve itkVoronoiSegmentationImageFilter style.
>> STYLE: Improve the MalahanobisDistanceThresholdImageFunction style.
>> ENH: Improve coverage for itkMalahanobisDistanceThreshold.
>> ENH: Improve itk::MinimumMaximumImageCalculator coverage.
>> ENH: Improve itkMinimumMaximumImageCalculator style.
>> BUG: Fix type mismatch in test.
>> STYLE: Improve itkPolylineMaskImagefilter style.
>> ENH: Improve itkPolylineMaskImageFilter coverage.
>> ENH: Improve itkFileListVideoStyle.
>> ENH: Improve itkLandmarkBasedTransformInitializer coverage.
>> ENH: Add baseline image to itkPolylineMaskImageFilter test.
>> ENH: Improve coverage for itkBSplineTransformInitializer.
>> STYLE: Improve itkBSplineTransformInitializer doc style.
>> ENH: Enhance itkBSplineTransformInitializer implementation.
>> DOC: Fix typo in method documentation.
>> ENH: Improve the itkRegularStepGradientDescentOptimizerv4 style.
>> STYLE: Improve the itkSimpleContourExtractorImageFilter style.
>> ENH: Exercise the class' Get methods.
>> ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter.
>> ENH: Improve style for itkThresholdLabelerImageFilter.
>> ENH: Improve itkThresholdLabelerImageFilter coverage.
>> ENH: Get internal ImageIO via a const macro.
>> ENH: Improve the itkSimpleContourExtractorImageFilter coverage.
>> STYLE: Improve the itkMetaArray class style.
>> ENH: Improve MetaArrayReader/Writer coverages.
>> ENH: Improve the itkCovarianceImageFunction style.
>> STYLE: Improve itkVoronoiDiagram2DGenerator style.
>> ENH: Improve VoronoiDiagram2DGenerator coverage.
>> STYLE: Improve the itkBayesianClassifierImageFilter style.
>> STYLE: Improve the itkMetaArrayWriter style.
>> ENH: Improve itkCovarianteImageFunction coverage.
>> COMP: Fix signed/unsigned int comparison warning.
>> DOC: Improve itkGrayscaleDilateImageFilter documentation.
>> DOC: Improve documentation for itkGrayscaleErodeImageFilter.
>> DOC: Improve ConfigureHistogram method documentation.
>> STYLE: Improve the itkMovingHistogramMorphologyImagefilter style.
>> BUG: Fix Superclass name in RTTI.
>> STYLE: Improve itkGaussianInterpolateImageFunction style.
>> ENH: Improve coverage for itkGaussianInterpolateImageFunction.
>> ENH: Improve itkBayesianClassifierImageFilter coverage.
>> ENH: Add itkBSplineControlPointImageFilter RTTI.
>> STYLE: Improve itkBSplinecontrolPointImageFilter style.
>> ENH: Improve itkBSplineControlPointImageFilter coverage.
>> ENH: Improve coverage for itkRegularStepGradientDescentOptimizerv4.
>> STYLE: Improve the class implementation file style.
>> STYLE: Improve the itkResampleImageFilter style.
>> DOC: Fix typo in GetMTime method doc.
>> STYLE: Remove out-of-body implementation doc
>> ENH: Improve itkResampleImageFilter coverage.
>> ENH: Improve itkAbsImageAdaptor and Filter coverage.
>> BUG: Fix itkLSMImageIO class' Superclass name.
>> ENH: Improve the itkInterpolateImagePointsFilter coverage.
>> ENH: Improve itkPowImageFilter coverage.
>> BUG: Fix ConvolutionImageFilter RTTI.
>> STYLE: Use initialization lists.
>> STYLE: Improve BinaryFunctorImageFilter style.
>> ENH: Improve itkMinimumImageFilter code coverage.
>> BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion.
>> ENH: Improve MaximumImageFilter coverage.
>> BUG: Fix conversion to PixelType conversion.
>> COMP: Fix double to unsigned char conversion warning.
>> ENH: Improve coverage for itkNormalizeToConstantImageFilter.
>> BUG: Fix itkSquaredDifferenceErrorFunction RTTI.
>> ENH: Improve itkMeanImageFunctionCoverage.
>> ENH: Improve itkSquareImageFilter coverage.
>> STYLE: Improve the itkSquaredDifferenceErrorFunction style.
>> STYLE: Enhance style for itkNormalizeToConstantImageFilter.
>> STYLE: Improve itkMeanImageFunction style.
>> ENH: Remove unnecesary call to filter print.
>> ENH: Improve itkRegionOfInterestImageFilter coverage.
>> STYLE: Improve itkRegionOfInterestImageFilter style.
>> STYLE: Improve itkPasteImageFilter style.
>> STYLE: Improve itkJoinSeriesImageFilter style.
>> BUG: Fix itkPadLabelMapFilter RTTI Superclass.
>> COMP: Address std::cout.precision conversion warning.
>> ENH: Improve itkBayesianClassifiertImageFilter coverage.
>> ENH: Improve itkPadLabelMapFilter coverage.
>> ENH: Improve itkJoinSeriesImageFilter coverage.
>> ENH: Improve the itkPasteImageFilter coverage.
>> ENH: Improve MeanImageFilter coverage.
>> COMP: Address std::cout.precision conversion warning.
>> ENH: Improve TernaryMagnitudeImageFilter coverage.
>> ENH: Improve FFTConvolutionImageFilter coverage.
>> DOC: Fix class documentation in ternary magnitude filters.
>> ENH: Improve ConstrainedValueDifferenceImageFilter coverage.
>> ENH: Improve AndImageFilter coverage.
>> ENH: Add baseline test to itkTernaryMagnitudeImageFilter.
>> ENH: Use MD5 comparison framework in baseline test.
>> ENH: Improve itk::VectorRescaleIntensityImageFilter coverage.
>> STYLE: Improve the itkVectorRescaleIntensityImageFilter style.
>> ENH: Print missing ivar in filter PrintSelf method.
>> ENH: Improve itkComplexToImaginaryFilter coverage.
>> ENH: Improve itkComplexToPhaseImageFilter coverage.
>> ENH: Improve itkComplexToModulusImageFilter coverage.
>> ENH: Improve itkComplexToRealImageFilter coverage.
>> ENH: Improve itkVectorResampleImageFilter coverage.
>> ENH: Add GetTransform method.
>> ENH: Improve itkConstrainedValueAdditionImageFilter coverage.
>> ENH: Improve itkModulusImageFilter coverage.
>> ENH: Improve itkLog10ImageFilter coverage.
>> ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage.
>> ENH: Improve itkLogImageFilter coverage.
>> ENH: Improve itkInvertIntensityImageFilter coverage.
>> STYLE: Improve itkInvertIntensityImageFilter style.
>> DOC: Add missing doc to itkInvertIntensityImageFilter.
>> STYLE: Improve itkIntensityWindowingImageFilter style.
>> STYLE: Use initialization lists.
>> ENH: Improve itkIntensityWindowingImageFilter coverage.
>> ENH: Improve itkNaryMaximumImageFilter coverage.
>> COMP: Fix std::precision type casting warning.
>> ENH: Improve itkPointSetToPointSetRegistrationMethod coverage.
>> STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod style.
>> ENH: Remove SmartPointers being explicitly initialized to null.
>> STYLE: Improve the itkPointSetToImageRegistrationMethod style.
>> ENH: Improve itkPointSetToImageRegistration coverage.
>> STYLE: Change the name of the itkPointSetToImageRegistrationMethod test.
>> STYLE: Improve itkVectorResampleImageFilter style.
>> STYLE: Improve the itkAntiAliasBinaryImageFilter style.
>> ENH: Improve trigonometric function filters' coverage.
>> STYLE: Remove test names from std::out messages.
>> ENH: Improve Boolean Algebra ImageFilters coverage.
>> STYLE: Improve the EuclideanDistancePointMetric style.
>> ENH: Improve itkSigmoidImageFilter coverage.
>> STYLE: Improve itkCropImageFilter style.
>> ENH: Improve itkCropImageFilter coverage.
>> ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage.
>> ENH: Improve itkRescaleIntensityImageFilter coverage.
>> ENH: Improve the itkMatrixSelectionImageFilter coverage.
>> ENH: Improve itkTanImageFilter and Adaptor coverage.
>> ENH: Increase itkSqrtImageFilter and Adaptor coverage.
>> ENH: Increase itkTernaryOperatorImageFilter coverage.
>> ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage.
>> STYLE: Improve itkScalarImagekmeansImageFilter style.
>> STYLE: Conform to TEST_SET_GET_VALUE definition.
>> BUG: Fix uninitialized variable due to dynamic analysis defect.
>> BUG: Fix uninitialized variable defect reported by valgrind.
>> ENH: Improve the itkPointSetToPointSetRegistrationTest.
>> ENH: Improve the itkPointSetToImageRegistrationTest.
>> ENH: Increas BinaryMagnitudeImageFilter coverage.
>> STYLE: Remove test name from std output.
>> ENH: Increase MagnitudeImageFilter coverage.
>> BUG: Fix uninitialized variable defect reported by valgrind.
>> BUG: Fix Superclass name in RTTI.
>> STYLE: Improve itkFrustumSpatialFunction style.
>> STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction style.
>> BUG: Fix Superclass template argument list.
>> STYLE: Improve the itkTorusInteriorExteriorSpatialFunction style.
>> STYLE: Improve the itkCheckerBoardImageFilter class style.
>> ENH: Improve the itk::LabelVotingImageFilter coverage.
>> ENH: Improve itkCheckerBoardImageFilter coverage.
>> STYLE: Improve itk::LabelVotingImageFilter style.
>> STYLE: Improve the itkHoughTransform2DCirclesImageFilter style.
>> ENH: Add test for itk::FrustumSpatialFunction class.
>> ENH: Improve itkConnectedThresholdImageFilter coverage.
>> STYLE: Improve itkConnectedThresholdImageFilter style.
>> BUG: Fix FrustumSpatialFunction internal precision conversion.
>> COMP: Fix implicit conversion warning.
>> STYLE: Improve itkThresholdImageFilter style.
>> ENH: Add test for itk::TorusInteriorExteriorSpatialFunction.
>> BUG: Fix Superclass template argument list.
>> ENH: Improve itkUnsharpMaskingImageFilter implementation.
>> ENH: Improve the itkUnsharpMaskingImageFilter coverage.
>> ENH: Fix UnsharpMaskingImageFilter test inconsistencies.
>> BUG: Add missing itkTypeMacro.
>> DOC: Document the member variables.
>> BUG: Fix the itkImageSource RTTI class name,
>> STYLE: Improve itkLabelImageGaussianInterpolateImageFunction style.
>> ENH: Finish itkGaussianInterpolateImageFunction PrintSelf.
>> STYLE: Improve itkLabelOverlapMeasurementImageFilter style.
>>
>> KWSys Robot (6):
>> KWSys 2016-06-30 (96f06c8e)
>> KWSys 2016-10-23 (b630d2f5)
>> KWSys 2016-11-03 (37306a1c)
>> KWSys 2016-11-08 (2b3e2b1c)
>> KWSys 2016-11-09 (18c65411)
>> KWSys 2016-11-21 (cb55cf5a)
>>
>> Maeliss Jallais (1):
>> BUG: Add unsigned and signed short to the wrapping of vnl_matrix
>>
>> Matthew McCormick (85):
>> PERF: Simplify HilbertPath numberOfPathVertices computation.
>> BUG: CID 1355469 NNetClassifierTest4 unintended integer division.
>> BUG: Update Cuberille Remote for version check fix.
>> ENH: Bump ITK version to 4.11.0.
>> BUG: Fix HDF5ImageIO type information.
>> BUG: Fix H5File memory leak in HDF5ImageIO.
>> DOC: Collect Francois Budin's contributions in .mailmap
>> BUG: Limit WRAP_ITK_MODULES when building externally
>> STYLE: Improvements to ResourceProbe report output.
>> ENH: Add a useTabs argument to ResourceProbe::Report.
>> ENH: Add standard error measure to the ResourceProbe
>> ENH: Add itk_python_add_test function.
>> BUG: Remove VNL file from subtree merge.
>> COMP: Fix wrapping with a space in the Python include path
>> BUG: Fix PermuteAxesImageFilter pipeline method visibility
>> BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter
>> BUG: ResampleImageFilter honor isInside output of the transform method
>> COMP: Avoid recursive include of itkMath.h
>> COMP: Fix VXL header installation locations
>> BUG: ClampImageFilterTest for older GCC, InPlaceOn
>> DOC: Add CONTRIBUTING.md file to the top level.
>> COMP: Update VariationalRegistration to address Doxygen warnings
>> BUG: Compiler detections file installed into ITK build tree location
>> COMP: Do not use string(TIMESTAMP.
>> COMP: Remove HDF5 -std=c99 for C++ files
>> BUG: Do not build HDF5 static library with a shared build
>> ENH: Add PerformanceBenchmarking Remote Module
>> COMP: Remove duplicate wrappings for ResampleImageFilter
>> BUG: Put Python test output files in the build tree
>> BUG: Improve HDF5ImageIO::CloseDataSet name
>> COMP: Use add_python_test PythonLazyLoadingImage
>> COMP: Address missing override it itkFactoryTestLib.cxx
>> BUG: Index,Size,Offset constructors present in Python with C++11
>> COMP: Address missing override it itkFactoryTestLib.cxx
>> BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT
>> ENH: Bump SetupForDevelopment version
>> BUG: Add missing ZLib deflate support to HDF5
>> BUG: Address memory leak, remove NumPy build dep in BridgeNumPy
>> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory
>> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory
>> BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include
>> ITK_WRAP_IMAGE_DIMS
>> BUG: RichardsonLucyDeconvolutionImageFilter with non-null input
>> Image Origin
>> BUG: Fix inconsistent Twister start with Initialize(seed) and SetSeed(seed)
>> BUG: Do not hard code CMake scripts in HDF5
>> COMP: Workaround Emscripten ITKCommon test build failure
>> COMP: Do embed fancy HDF5 libsettings with Emscripten
>> COMP: Add missing H5T_patch_vlen_file declaration
>> ENH: Bump CastXML to 2016-10-11 master.
>> COMP: Workaround Emscripten ITKCommon test build failure
>> BUG: Swap CastXML hashes for Mac OSX and Windows
>> ENH: Sync ExternalData.cmake with upstream CMake 3.6.2
>> COMP: Fix VNL tests when cross-compiling
>> ENH: ExternalData multi-algorithm support
>> ENH: ExternalData support for data.kitware.com
>> BUG: Install missing H5pubconf.h
>> BUG: Use SpacePrecisionType in TileImageFilter
>> BUG: Use internal ExternalData_Add_Target
>> ENH: Run .sha512, .md5 simultaneous modification pre-commit check
>> BUG: Correct CastXML Windows binary
>> BUG: Support non-zero Index in LevelSetNeighborhoodExtractor
>> ENH: Add ArchiveTestingDataOnGirder.py
>> BUG: Correct AtanRegularizationHeavisideStepFunction derivative
>> ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh
>> BUG: Remove extra HessianToObjectness content links
>> ENH: Wrap SpatialFunction float types with ITK_WRAP_float
>> BUG: Bump PerformanceBenchmarking to 2016-11-04
>> BUG: itk_python_expression_add_test too many quotes.
>> ENH: Wrap VectorImage with complex real pixel types
>> ENH: Bump PerformanceBenchmarking to 2016-11-07
>> BUG: Do not assume zero Index in ReinitializeLevelSetImageFilter
>> ENH: Create itk_module_add_library macro
>> BUG: Update computeCodeCoverageLocally.sh for KWStyle addition
>> COMP: Install a newer version of CMake on CircleCI
>> ENH: Use GitHub Pages as the first ExternalData resource
>> ENH: Add tests to demonstrate OSX dynamic_cast failure
>> BUG: Use random seed with for MersenneTwisterRandomVariateGenerator.
>> BUG: Enable program global timestamp
>> BUG: Set random number seed in Mattes metric test
>> BUG: Notify builder that ITK_DYNAMIC_LOADING is required with wrapping
>> BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON
>> BUG: Set random number seed mutual information metric tests
>> BUG: Wrap std::vector< itk.Point >
>> BUG: Fix wrapping of LandmarkBasedTransformInitializer
>> BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter
>> DOC: Add Dženan Zukić to .mailmap
>>
>> Max Smolens (4):
>> COMP: CID-1266557 StatisticsLabelMapFilter uninitialized scalar field
>> BUG: CID-1355438 QuadEdgeTest1 resource leaks
>> COMP: CID-1355472 MIRegistrationFunction unused value
>> COMP: Fix link errors for VNL template instantiations on Windows
>>
>> Mayeul Chassagnard (7):
>> BUG: Test added and error fixed in HDF5ImageIO
>> ENH: Update add_library TO itk_module_add_library
>> COMP: Set Policy CMP0023 target_link_libraries for
>> Modules/ThirdParty/VNLI...
>> BUG: Add ITK_TEMPLATE_EXPORT to template classes
>> BUG: Fix errors linked to dyn_cast merge
>> BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for classes
>> BUG: dash3win7 dashboard build error unresolved external symbol
>>
>> Michka Popoff (3):
>> ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0
>> ENH: Update igenerator.py for pygccxml v1.8.0
>> COMP: Use pygccxml's public API for apply definitions
>>
>> Pierre Barbier de Reuille (2):
>> COMP: Fix function naming error when using FFTWD
>> COMP: Fix function naming error when using FFTWD
>>
>> Sean McBride (1):
>> COMP: Bypass HDF5 bugs under TSan
>>
>> Simon Rit (2):
>> COMP: remove C++11 compiler warning for CUDA compilations
>> COMP: remove C++11 compiler warning for CUDA compilations
>>
>> Somesh Kashyap (2):
>> BUG: Override TransformCategoryType for
>> AzimuthElevationToCartesianTransform
>> BUG: -Added test case for itkAzimuthElevationToCartesianTransform
>>
>> Sumedha Singla (1):
>> ENH: Updated the git tag for ITK-Minimal-Path-Extraction remote module
>>
>> Taylor Braun-Jones (4):
>> COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS is enabled
>> COMP: Fix truncation from double to float warning
>> DOC: Fix incorrect itkFactorylessNewMacro documentation
>> COMP: Only include the headers for required OpenCV modules
>>
>> Thien Nguyen (1):
>> PERF: SmapsFileParser unnecessary dynamic_cast
>>
>> VXL Maintainers (4):
>> VNL 2016-05-15 (14f97ab4)
>> VNL 2016-06-22 (23a93adb)
>> VNL 2016-06-29 (d62a2d70)
>> VNL 2016-07-06 (acfa62cc)
>>
>> Vladimir S. FONOV (1):
>> COMP: Build against GCC 5.3.1
>>
>> Zach Williamson (2):
>> ENH: Update Remote Module Tags
>> BUG: Fix Python Wrappings in C++11
>>
>> Ziv Yaniv (1):
>> BUG: Metric sampling percentage accepted values outside (0.0, 1.0].
>>
>>
>> -----------------------------------------------------
>> Errors or omissions? Please fix them here:
>>
>> https://docs.google.com/document/d/1UQAh7_mDjps0GZYX62biTwFrA54KRvf__4oeT0ymzZg/edit
>> _____________________________________
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>>
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>>
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>>
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