[ITK-users] Interleaved dataset interpolation

[Dženan Zukić]

Hi Tomáš,

if you are looking at slice thickness tag and seeing that it is only 1.25
mm, while the distances between slices are 2.5 mm, do not worry. Similar
thing is common in practice, although your case is a bit more extreme. But
ITK should read that series normally, and do some kind of interpolation
during registration (linear is usual). You shouldn't need to do anything
special.

Regards,
Dženan

On Thu, Mar 30, 2017 at 10:33 AM, topsorn <tomas.psorn at gmail.com> wrote:

> Hello,
>
> I'm dealing with a registration problem. I'm supposed to perform 3D
> registration of rat brain MRI scans. The problem is, that my dataset has
> gaps in "z" direction. That means I have dataset of 15, 1.25 mm thick
> slices
> and between them 14, 1.25 mm thick gaps. Is there a way of interpolating
> the
> missing slices using ITK? Thank you for an answer.
>
> Tomáš Pšorn
>
>
>
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