#include <itkHistogramImageToImageMetric.h>

Detailed Description

template<typename TFixedImage, typename TMovingImage>
class itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >

Computes similarity between two objects to be registered.

This class is templated over the type of the fixed and moving images to be compared.

The metric computes the similarity measure between pixels in the moving image and pixels in the fixed image using a histogram.

Definition at line 39 of file itkHistogramImageToImageMetric.h.

Inheritance diagram for itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >:

Collaboration diagram for itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >:

Public Types
using	ConstPointer = SmartPointer< const Self >

using	FixedImageConstPointerType = typename Superclass::FixedImageConstPointer

using	FixedImagePixelType = typename Superclass::FixedImageType::PixelType

using	HistogramPointer = typename HistogramType::Pointer

using	HistogramSizeType = typename HistogramType::SizeType

using	HistogramType = Statistics::Histogram< double >

using	MeasurementVectorType = typename HistogramType::MeasurementVectorType

using	MovingImageConstPointerType = typename Superclass::MovingImageConstPointer

using	MovingImagePixelType = typename Superclass::MovingImageType::PixelType

using	Pointer = SmartPointer< Self >

using	ScalesType = Array< double >

using	Self = HistogramImageToImageMetric

using	Superclass = ImageToImageMetric< TFixedImage, TMovingImage >

Public Types inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
using	ConstPointer = SmartPointer< const Self >

using	CoordinateRepresentationType = typename Superclass::ParametersValueType

using	FixedImageConstPointer = typename FixedImageType::ConstPointer

using	FixedImageIndexContainer = std::vector< FixedImageIndexType >

using	FixedImageIndexType = typename FixedImageType::IndexType

using	FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType

using	FixedImageMaskConstPointer = typename FixedImageMaskType::ConstPointer

using	FixedImageMaskPointer = typename FixedImageMaskType::Pointer

using	FixedImageMaskType = SpatialObject< Self::FixedImageDimension >

using	FixedImagePixelType = typename TFixedImage::PixelType

using	FixedImagePointType = typename TransformType::InputPointType

using	FixedImageRegionType = typename FixedImageType::RegionType

using	FixedImageType = TFixedImage

using	GradientImageFilterPointer = typename GradientImageFilterType::Pointer

using	GradientImageFilterType = GradientRecursiveGaussianImageFilter< MovingImageType, GradientImageType >

using	GradientImagePointer = SmartPointer< GradientImageType >

using	GradientImageType = Image< GradientPixelType, Self::MovingImageDimension >

using	GradientPixelType = CovariantVector< RealType, Self::MovingImageDimension >

using	InputPointType = typename TransformType::InputPointType

using	InterpolatorPointer = typename InterpolatorType::Pointer

using	InterpolatorType = InterpolateImageFunction< MovingImageType, CoordinateRepresentationType >

using	MovingImageConstPointer = typename MovingImageType::ConstPointer

using	MovingImageIndexType = typename MovingImageType::IndexType

using	MovingImageMaskConstPointer = typename MovingImageMaskType::ConstPointer

using	MovingImageMaskPointer = typename MovingImageMaskType::Pointer

using	MovingImageMaskType = SpatialObject< Self::MovingImageDimension >

using	MovingImagePixelType = typename TMovingImage::PixelType

using	MovingImagePointType = typename TransformType::OutputPointType

using	MovingImageType = TMovingImage

using	MultiThreaderType = MultiThreaderBase

using	OutputPointType = typename TransformType::OutputPointType

using	Pointer = SmartPointer< Self >

using	RealType = typename NumericTraits< MovingImagePixelType >::RealType

using	Self = ImageToImageMetric

using	Superclass = SingleValuedCostFunction

using	TransformJacobianType = typename TransformType::JacobianType

using	TransformParametersType = typename TransformType::ParametersType

using	TransformPointer = typename TransformType::Pointer

using	TransformType = Transform< CoordinateRepresentationType, Self::MovingImageDimension, Self::FixedImageDimension >

Public Types inherited from itk::SingleValuedCostFunction
using	ConstPointer = SmartPointer< const Self >

using	DerivativeType = Array< ParametersValueType >

using	MeasureType = double

using	ParametersType = Superclass::ParametersType

using	ParametersValueType = Superclass::ParametersValueType

using	Pointer = SmartPointer< Self >

using	Self = SingleValuedCostFunction

using	Superclass = CostFunction

Public Types inherited from itk::CostFunctionTemplate< TInternalComputationValueType >
using	ConstPointer = SmartPointer< const Self >

using	ParametersType = OptimizerParameters< TInternalComputationValueType >

using	ParametersValueType = TInternalComputationValueType

using	Pointer = SmartPointer< Self >

using	Self = CostFunctionTemplate

using	Superclass = Object

Public Types inherited from itk::Object
using	ConstPointer = SmartPointer< const Self >

using	Pointer = SmartPointer< Self >

using	Self = Object

using	Superclass = LightObject

Public Types inherited from itk::LightObject
using	ConstPointer = SmartPointer< const Self >

using	Pointer = SmartPointer< Self >

using	Self = LightObject

Public Member Functions
void	GetDerivative (const TransformParametersType &parameters, DerivativeType &derivative) const override

virtual double	GetDerivativeStepLength () const

virtual const ScalesType &	GetDerivativeStepLengthScales () const

virtual const HistogramPointer &	GetHistogram () const

virtual const HistogramSizeType &	GetHistogramSize () const

const MeasurementVectorType &	GetLowerBound () const

const char *	GetNameOfClass () const override

virtual const FixedImagePixelType &	GetPaddingValue () const

const MeasurementVectorType &	GetUpperBound () const

MeasureType	GetValue (const TransformParametersType &parameters) const override

void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &value, DerivativeType &derivative) const override

void	Initialize () override

virtual void	SetDerivativeStepLength (double _arg)

virtual void	SetDerivativeStepLengthScales (ScalesType _arg)

virtual void	SetHistogramSize (HistogramSizeType _arg)

void	SetLowerBound (const MeasurementVectorType &bounds)

virtual void	SetPaddingValue (FixedImagePixelType _arg)

void	SetTransform (TransformType *transform) override

void	SetUpperBound (const MeasurementVectorType &bounds)


virtual void	SetUpperBoundIncreaseFactor (double _arg)

virtual double	GetUpperBoundIncreaseFactor () const


virtual void	SetUsePaddingValue (bool _arg)

virtual bool	GetUsePaddingValue () const

Public Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
virtual void	ComputeGradient ()

virtual const FixedImageRegionType &	GetFixedImageRegion () const

virtual const FixedImagePixelType &	GetFixedImageSamplesIntensityThreshold () const

virtual GradientImageType *	GetModifiableGradientImage ()

virtual InterpolatorType *	GetModifiableInterpolator ()

virtual TransformType *	GetModifiableTransform ()

const char *	GetNameOfClass () const override

SizeValueType	GetNumberOfMovingImageSamples ()

unsigned int	GetNumberOfParameters () const override

virtual const SizeValueType &	GetNumberOfPixelsCounted () const

SizeValueType	GetNumberOfSpatialSamples ()

virtual const bool &	GetUseAllPixels () const

virtual const bool &	GetUseFixedImageIndexes () const

virtual const bool &	GetUseFixedImageSamplesIntensityThreshold () const

virtual const bool &	GetUseSequentialSampling () const

virtual void	MultiThreadingInitialize ()

void	SetFixedImageIndexes (const FixedImageIndexContainer &indexes)

virtual void	SetFixedImageRegion (const FixedImageRegionType reg)

void	SetFixedImageSamplesIntensityThreshold (const FixedImagePixelType &thresh)

virtual void	SetInterpolator (InterpolatorType *_arg)

void	SetNumberOfSpatialSamples (SizeValueType num)

void	SetTransformParameters (const ParametersType &parameters) const

void	SetUseAllPixels (bool useAllPixels)

void	SetUseFixedImageIndexes (bool useIndexes)

void	SetUseFixedImageSamplesIntensityThreshold (bool useThresh)

void	SetUseSequentialSampling (bool useSequential)

void	UseAllPixelsOff ()

void	UseAllPixelsOn ()

virtual void	SetFixedImage (const FixedImageType *_arg)

virtual const FixedImageType *	GetFixedImage () const

virtual void	SetMovingImage (const MovingImageType *_arg)

virtual const MovingImageType *	GetMovingImage () const

virtual void	SetMovingImageMask (const MovingImageMaskType *_arg)

virtual const MovingImageMaskType *	GetMovingImageMask () const

virtual void	SetFixedImageMask (const FixedImageMaskType *_arg)

virtual const FixedImageMaskType *	GetFixedImageMask () const

void	SetNumberOfWorkUnits (ThreadIdType numberOfWorkUnits)

virtual const ThreadIdType &	GetNumberOfWorkUnits () const

virtual void	SetComputeGradient (bool _arg)

virtual const bool &	GetComputeGradient () const

virtual void	ComputeGradientOn ()

virtual void	SetNumberOfFixedImageSamples (SizeValueType numSamples)

virtual const SizeValueType &	GetNumberOfFixedImageSamples () const

void	ReinitializeSeed ()

void	ReinitializeSeed (int seed)

virtual void	SetUseCachingOfBSplineWeights (bool _arg)

virtual const bool &	GetUseCachingOfBSplineWeights () const

virtual void	UseCachingOfBSplineWeightsOn ()

virtual MultiThreaderType *	GetModifiableThreader ()

const TransformPointer *	GetThreaderTransform ()

Public Member Functions inherited from itk::SingleValuedCostFunction
virtual void	GetDerivative (const ParametersType &parameters, DerivativeType &derivative) const =0

virtual MeasureType	GetValue (const ParametersType &parameters) const =0

virtual void	GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *cmd) const

unsigned long	AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const

LightObject::Pointer	CreateAnother () const override

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary ()

const MetaDataDictionary &	GetMetaDataDictionary () const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

void	Register () const override

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag) const

void	SetDebug (bool debugFlag) const

void	SetReferenceCount (int) override

void	UnRegister () const noexcept override

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

void	SetMetaDataDictionary (MetaDataDictionary &&rrhs)

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
Pointer	Clone () const

virtual void	Delete ()

virtual int	GetReferenceCount () const

void	Print (std::ostream &os, Indent indent=0) const

Protected Member Functions
void	ComputeHistogram (const TransformParametersType &parameters, HistogramType &histogram) const

void	ComputeHistogram (const TransformParametersType &parameters, unsigned int parameter, double step, HistogramType &histogram) const

void	CopyHistogram (HistogramType &target, HistogramType &source) const

virtual MeasureType	EvaluateMeasure (HistogramType &histogram) const =0

void	PrintSelf (std::ostream &os, Indent indent) const override


	HistogramImageToImageMetric ()

	~HistogramImageToImageMetric () override=default

Protected Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
virtual void	ComputeImageDerivatives (const MovingImagePointType &mappedPoint, ImageDerivativesType &gradient, ThreadIdType threadId) const

void	GetValueAndDerivativeMultiThreadedInitiate () const

void	GetValueAndDerivativeMultiThreadedPostProcessInitiate () const

virtual void	GetValueAndDerivativeThread (ThreadIdType threadId) const

virtual void	GetValueAndDerivativeThreadPostProcess (ThreadIdType, bool) const

virtual void	GetValueAndDerivativeThreadPreProcess (ThreadIdType, bool) const

virtual bool	GetValueAndDerivativeThreadProcessSample (ThreadIdType, SizeValueType, const MovingImagePointType &, double, const ImageDerivativesType &) const

	ImageToImageMetric ()

virtual void	PreComputeTransformValues ()

void	PrintSelf (std::ostream &os, Indent indent) const override

virtual void	SampleFixedImageIndexes (FixedImageSampleContainer &samples) const

virtual void	SampleFixedImageRegion (FixedImageSampleContainer &samples) const

virtual void	SampleFullFixedImageRegion (FixedImageSampleContainer &samples) const

virtual void	SynchronizeTransforms () const

virtual void	TransformPoint (unsigned int sampleNumber, MovingImagePointType &mappedPoint, bool &sampleOk, double &movingImageValue, ThreadIdType threadId) const

virtual void	TransformPointWithDerivatives (unsigned int sampleNumber, MovingImagePointType &mappedPoint, bool &sampleOk, double &movingImageValue, ImageDerivativesType &movingImageGradient, ThreadIdType threadId) const

	~ImageToImageMetric () override=default

void	GetValueMultiThreadedInitiate () const

void	GetValueMultiThreadedPostProcessInitiate () const

virtual void	GetValueThread (ThreadIdType threadId) const

virtual void	GetValueThreadPreProcess (ThreadIdType, bool) const

virtual bool	GetValueThreadProcessSample (ThreadIdType, SizeValueType, const MovingImagePointType &, double) const

virtual void	GetValueThreadPostProcess (ThreadIdType, bool) const

Protected Member Functions inherited from itk::SingleValuedCostFunction
	SingleValuedCostFunction ()=default

	~SingleValuedCostFunction () override

Protected Member Functions inherited from itk::CostFunctionTemplate< TInternalComputationValueType >
	CostFunctionTemplate ()=default

	~CostFunctionTemplate () override=default

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &timeStamp)

	~Object () override

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Protected Attributes
HistogramSizeType	m_HistogramSize {}

MeasurementVectorType	m_LowerBound {}

bool	m_LowerBoundSetByUser {}

MeasurementVectorType	m_UpperBound {}

double	m_UpperBoundIncreaseFactor {}

bool	m_UpperBoundSetByUser {}

Protected Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
BSplineInterpolatorType::Pointer	m_BSplineInterpolator {}

BSplineParametersOffsetType	m_BSplineParametersOffset {}

MovingImagePointArrayType	m_BSplinePreTransformPointsArray {}

BSplineTransformType::Pointer	m_BSplineTransform {}

BSplineTransformIndexArrayType	m_BSplineTransformIndices {}

BSplineTransformIndicesArrayType	m_BSplineTransformIndicesArray {}

BSplineTransformWeightsType	m_BSplineTransformWeights {}

BSplineTransformWeightsArrayType	m_BSplineTransformWeightsArray {}

bool	m_ComputeGradient { true }

DerivativeFunctionType::Pointer	m_DerivativeCalculator {}

FixedImageConstPointer	m_FixedImage {}

FixedImageIndexContainer	m_FixedImageIndexes {}

FixedImageMaskConstPointer	m_FixedImageMask {}

FixedImageSampleContainer	m_FixedImageSamples {}

FixedImagePixelType	m_FixedImageSamplesIntensityThreshold {}

GradientImagePointer	m_GradientImage {}

InterpolatorPointer	m_Interpolator {}

MovingImageConstPointer	m_MovingImage {}

MovingImageMaskConstPointer	m_MovingImageMask {}

SizeValueType	m_NumberOfFixedImageSamples { 50000 }

SizeValueType	m_NumberOfParameters { 0 }

SizeValueType	m_NumberOfPixelsCounted { 0 }

ThreadIdType	m_NumberOfWorkUnits { 1 }

SizeValueType	m_NumBSplineWeights { 0 }

int	m_RandomSeed {}

bool	m_ReseedIterator { false }

std::unique_ptr< BSplineTransformIndexArrayType[]>	m_ThreaderBSplineTransformIndices

std::unique_ptr< BSplineTransformWeightsType[]>	m_ThreaderBSplineTransformWeights

std::unique_ptr< TransformPointer[]>	m_ThreaderTransform

TransformPointer	m_Transform {}

bool	m_UseAllPixels { false }

bool	m_UseCachingOfBSplineWeights { true }

bool	m_UseFixedImageIndexes { false }

bool	m_UseFixedImageSamplesIntensityThreshold { false }

bool	m_UseSequentialSampling { false }

BooleanArrayType	m_WithinBSplineSupportRegionArray {}

MultiThreaderType::Pointer	m_Threader {}

std::unique_ptr< ConstantPointerWrapper >	m_ConstSelfWrapper

std::unique_ptr< unsigned int[]>	m_ThreaderNumberOfMovingImageSamples

bool	m_WithinThreadPreProcess { false }

bool	m_WithinThreadPostProcess { false }

Protected Attributes inherited from itk::LightObject
std::atomic< int >	m_ReferenceCount {}

Private Attributes
double	m_DerivativeStepLength {}

ScalesType	m_DerivativeStepLengthScales {}

HistogramPointer	m_Histogram {}

FixedImagePixelType	m_PaddingValue {}

bool	m_UsePaddingValue {}

Additional Inherited Members
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool val)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Static Public Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static constexpr unsigned int	FixedImageDimension = TFixedImage::ImageDimension

static constexpr unsigned int	MovingImageDimension = TMovingImage::ImageDimension

Protected Types inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
using	BooleanArrayType = std::vector< bool >

using	BSplineInterpolatorType = BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType >

using	BSplineParametersOffsetType = FixedArray< SizeValueType, FixedImageType::ImageDimension >

using	BSplineTransformIndexArrayType = typename BSplineTransformType::ParameterIndexArrayType

using	BSplineTransformIndicesArrayType = Array2D< IndexValueType >

using	BSplineTransformType = BSplineBaseTransform< CoordinateRepresentationType, FixedImageType::ImageDimension, Self::DeformationSplineOrder >

using	BSplineTransformWeightsArrayType = Array2D< WeightsValueType >

using	BSplineTransformWeightsType = typename BSplineTransformType::WeightsType

using	DerivativeFunctionType = CentralDifferenceImageFunction< MovingImageType, CoordinateRepresentationType >

using	FixedImageSampleContainer = std::vector< FixedImageSamplePoint >

using	ImageDerivativesType = CovariantVector< double, Self::MovingImageDimension >

using	IndexValueType = typename BSplineTransformIndexArrayType::ValueType

using	MovingImagePointArrayType = std::vector< MovingImagePointType >

using	WeightsValueType = typename BSplineTransformWeightsType::ValueType

Static Protected Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeMultiThreaded (void *workunitInfoAsVoid)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeMultiThreadedPostProcess (void *workunitInfoAsVoid)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueMultiThreaded (void *workunitInfoAsVoid)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueMultiThreadedPostProcess (void *workunitInfoAsVoid)

Static Protected Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static constexpr unsigned int	DeformationSplineOrder = 3

Member Typedef Documentation

◆ ConstPointer

template<typename TFixedImage , typename TMovingImage >

using itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::ConstPointer = SmartPointer<const Self>

Definition at line 48 of file itkHistogramImageToImageMetric.h.

◆ FixedImageConstPointerType

template<typename TFixedImage , typename TMovingImage >

using itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageConstPointerType = typename Superclass::FixedImageConstPointer

Definition at line 68 of file itkHistogramImageToImageMetric.h.

◆ FixedImagePixelType

template<typename TFixedImage , typename TMovingImage >

using itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePixelType = typename Superclass::FixedImageType::PixelType

Definition at line 65 of file itkHistogramImageToImageMetric.h.

◆ HistogramPointer

template<typename TFixedImage , typename TMovingImage >

using itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramPointer = typename HistogramType::Pointer

Definition at line 78 of file itkHistogramImageToImageMetric.h.

◆ HistogramSizeType

template<typename TFixedImage , typename TMovingImage >

using itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramSizeType = typename HistogramType::SizeType

Definition at line 77 of file itkHistogramImageToImageMetric.h.

◆ HistogramType

template<typename TFixedImage , typename TMovingImage >

using itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramType = Statistics::Histogram<double>

Typedefs for histogram. This should have been defined as Histogram<RealType,2> but a bug in VC++7 produced an internal compiler error with such declaration.

Definition at line 74 of file itkHistogramImageToImageMetric.h.

◆ MeasurementVectorType

template<typename TFixedImage , typename TMovingImage >

using itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::MeasurementVectorType = typename HistogramType::MeasurementVectorType

Definition at line 76 of file itkHistogramImageToImageMetric.h.

◆ MovingImageConstPointerType

template<typename TFixedImage , typename TMovingImage >

using itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageConstPointerType = typename Superclass::MovingImageConstPointer

Definition at line 69 of file itkHistogramImageToImageMetric.h.

◆ MovingImagePixelType

template<typename TFixedImage , typename TMovingImage >

using itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePixelType = typename Superclass::MovingImageType::PixelType

Definition at line 67 of file itkHistogramImageToImageMetric.h.

◆ Pointer

template<typename TFixedImage , typename TMovingImage >

using itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::Pointer = SmartPointer<Self>

Definition at line 47 of file itkHistogramImageToImageMetric.h.

◆ ScalesType

template<typename TFixedImage , typename TMovingImage >

using itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::ScalesType = Array<double>

The scales type.

Definition at line 127 of file itkHistogramImageToImageMetric.h.

◆ Self

template<typename TFixedImage , typename TMovingImage >

using itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::Self = HistogramImageToImageMetric

Standard class type aliases.

Definition at line 45 of file itkHistogramImageToImageMetric.h.

◆ Superclass

template<typename TFixedImage , typename TMovingImage >

using itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::Superclass = ImageToImageMetric<TFixedImage, TMovingImage>

Definition at line 46 of file itkHistogramImageToImageMetric.h.

Constructor & Destructor Documentation

◆ HistogramImageToImageMetric()

template<typename TFixedImage , typename TMovingImage >

itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramImageToImageMetric ( )

protected

Constructor is protected to ensure that New() function is used to create instances.

◆ ~HistogramImageToImageMetric()

template<typename TFixedImage , typename TMovingImage >

itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::~HistogramImageToImageMetric ( )

overrideprotecteddefault

Constructor is protected to ensure that New() function is used to create instances.

Member Function Documentation

◆ ComputeHistogram() [1/2]

template<typename TFixedImage , typename TMovingImage >

void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::ComputeHistogram	(	const TransformParametersType &	parameters,
		HistogramType &	histogram
	)		const

protected

Computes the joint histogram from the transformation parameters passed to the function.

◆ ComputeHistogram() [2/2]

template<typename TFixedImage , typename TMovingImage >

void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::ComputeHistogram	(	const TransformParametersType &	parameters,
		unsigned int	parameter,
		double	step,
		HistogramType &	histogram
	)		const

protected

Computes the joint histogram from the transformation parameters passed to the function.

◆ CopyHistogram()

template<typename TFixedImage , typename TMovingImage >

void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::CopyHistogram	(	HistogramType &	target,
		HistogramType &	source
	)		const

protected

Copies a histogram.

◆ EvaluateMeasure()

template<typename TFixedImage , typename TMovingImage >

virtual MeasureType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::EvaluateMeasure ( HistogramType & histogram ) const

protectedpure virtual

Evaluates the similarity measure using the given histogram. All subclasses must reimplement this method.

Implemented in itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >, itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >, itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >, itk::CorrelationCoefficientHistogramImageToImageMetric< TFixedImage, TMovingImage >, itk::MeanSquaresHistogramImageToImageMetric< TFixedImage, TMovingImage >, and itk::MutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >.

◆ GetDerivative()

template<typename TFixedImage , typename TMovingImage >

void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetDerivative	(	const TransformParametersType &	parameters,
		DerivativeType &	derivative
	)		const

override

Get the derivatives of the match measure.

◆ GetDerivativeStepLength()

template<typename TFixedImage , typename TMovingImage >

virtual double itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetDerivativeStepLength ( ) const

virtual

Returns the step length used to calculate the derivative.

◆ GetDerivativeStepLengthScales()

template<typename TFixedImage , typename TMovingImage >

virtual const ScalesType& itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetDerivativeStepLengthScales ( ) const

virtual

Returns the derivate step length scales.

◆ GetHistogram()

template<typename TFixedImage , typename TMovingImage >

virtual const HistogramPointer& itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetHistogram ( ) const

virtual

Return the joint histogram. This is updated during every call to the GetValue() method. The histogram can for instance be used by itk::HistogramToImageFilter to plot the joint histogram.

◆ GetHistogramSize()

template<typename TFixedImage , typename TMovingImage >

virtual const HistogramSizeType& itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetHistogramSize ( ) const

virtual

Gets the histogram size.

◆ GetLowerBound()

template<typename TFixedImage , typename TMovingImage >

const MeasurementVectorType& itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetLowerBound ( ) const

Returns the current state of m_LowerBound.

◆ GetNameOfClass()

template<typename TFixedImage , typename TMovingImage >

const char* itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetNameOfClass ( ) const

overridevirtual

See also: LightObject::GetNameOfClass()

Reimplemented from itk::SingleValuedCostFunction.

Reimplemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >, itk::NormalizedMutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >, itk::MeanSquaresHistogramImageToImageMetric< TFixedImage, TMovingImage >, and itk::MutualInformationHistogramImageToImageMetric< TFixedImage, TMovingImage >.

◆ GetPaddingValue()

template<typename TFixedImage , typename TMovingImage >

virtual const FixedImagePixelType& itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetPaddingValue ( ) const

virtual

Returns the padding value.

◆ GetUpperBound()

template<typename TFixedImage , typename TMovingImage >

const MeasurementVectorType& itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetUpperBound ( ) const

Returns the current state of m_UpperBound.

◆ GetUpperBoundIncreaseFactor()

template<typename TFixedImage , typename TMovingImage >

virtual double itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetUpperBoundIncreaseFactor ( ) const

virtual

Factor to increase the upper bound for the samples in the histogram. Default value is 0.001

◆ GetUsePaddingValue()

template<typename TFixedImage , typename TMovingImage >

virtual bool itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetUsePaddingValue ( ) const

virtual

Set whether the padding value should be used to determine which pixels should be ignored when calculating the similarity measure. Those pixels in the fixed image which have the padding value will be ignored.

◆ GetValue()

template<typename TFixedImage , typename TMovingImage >

MeasureType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetValue ( const TransformParametersType & parameters ) const

override

Get the value for single valued optimizers.

◆ GetValueAndDerivative()

template<typename TFixedImage , typename TMovingImage >

void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivative	(	const TransformParametersType &	parameters,
		MeasureType &	value,
		DerivativeType &	derivative
	)		const

override

Get value and derivatives for multiple valued optimizers.

◆ Initialize()

template<typename TFixedImage , typename TMovingImage >

void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::Initialize ( )

overridevirtual

Initializes the metric.

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

◆ PrintSelf()

template<typename TFixedImage , typename TMovingImage >

void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

overrideprotectedvirtual

PrintSelf function

Reimplemented from itk::CostFunctionTemplate< TInternalComputationValueType >.

Reimplemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

◆ SetDerivativeStepLength()

template<typename TFixedImage , typename TMovingImage >

virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetDerivativeStepLength ( double _arg )

virtual

Sets the step length used to calculate the derivative.

◆ SetDerivativeStepLengthScales()

template<typename TFixedImage , typename TMovingImage >

virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetDerivativeStepLengthScales ( ScalesType _arg )

virtual

Sets the derivative step length scales.

◆ SetHistogramSize()

template<typename TFixedImage , typename TMovingImage >

virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetHistogramSize ( HistogramSizeType _arg )

virtual

Sets the histogram size. Note this function must be called before Initialize().

◆ SetLowerBound()

template<typename TFixedImage , typename TMovingImage >

void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetLowerBound ( const MeasurementVectorType & bounds )

Set the lower bounds of the intensities to be considered for computing the histogram. This option allows to focus the computation of the Metric in a particular range of intensities that correspond to features of interest.

◆ SetPaddingValue()

template<typename TFixedImage , typename TMovingImage >

virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetPaddingValue ( FixedImagePixelType _arg )

virtual

The padding value.

◆ SetTransform()

template<typename TFixedImage , typename TMovingImage >

void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTransform ( TransformType * transform )

overridevirtual

Define the transform and thereby the parameter space of the metric and the space of its derivatives

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

◆ SetUpperBound()

template<typename TFixedImage , typename TMovingImage >

void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetUpperBound ( const MeasurementVectorType & bounds )

Set the upper bounds of the intensities to be considered for computing the histogram. This option allows to focus the computation of the Metric in a particular range of intensities that correspond to features of interest.

◆ SetUpperBoundIncreaseFactor()

template<typename TFixedImage , typename TMovingImage >

virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetUpperBoundIncreaseFactor ( double _arg )

virtual

Factor to increase the upper bound for the samples in the histogram. Default value is 0.001

◆ SetUsePaddingValue()

template<typename TFixedImage , typename TMovingImage >

virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetUsePaddingValue ( bool _arg )

virtual

Set whether the padding value should be used to determine which pixels should be ignored when calculating the similarity measure. Those pixels in the fixed image which have the padding value will be ignored.

Member Data Documentation

◆ m_DerivativeStepLength

template<typename TFixedImage , typename TMovingImage >

double itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_DerivativeStepLength {}

private

The step length used to calculate the derivative.

Definition at line 232 of file itkHistogramImageToImageMetric.h.

◆ m_DerivativeStepLengthScales

template<typename TFixedImage , typename TMovingImage >

ScalesType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_DerivativeStepLengthScales {}

private

The derivative step length scales.

Definition at line 235 of file itkHistogramImageToImageMetric.h.

◆ m_Histogram

template<typename TFixedImage , typename TMovingImage >

HistogramPointer itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_Histogram {}

private

Pointer to the joint histogram. This is updated during every call to GetValue()

Definition at line 239 of file itkHistogramImageToImageMetric.h.

◆ m_HistogramSize

template<typename TFixedImage , typename TMovingImage >

HistogramSizeType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_HistogramSize {}

protected

The histogram size.

Definition at line 177 of file itkHistogramImageToImageMetric.h.

◆ m_LowerBound

template<typename TFixedImage , typename TMovingImage >

MeasurementVectorType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_LowerBound {}

mutableprotected

The lower bound for samples in the histogram.

Definition at line 180 of file itkHistogramImageToImageMetric.h.

◆ m_LowerBoundSetByUser

template<typename TFixedImage , typename TMovingImage >

bool itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_LowerBoundSetByUser {}

protected

Boolean flag to indicate whether the user supplied lower bounds or whether they should be computed from the min of image intensities

Definition at line 190 of file itkHistogramImageToImageMetric.h.

◆ m_PaddingValue

template<typename TFixedImage , typename TMovingImage >

FixedImagePixelType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_PaddingValue {}

private

The padding value.

Definition at line 224 of file itkHistogramImageToImageMetric.h.

◆ m_UpperBound

template<typename TFixedImage , typename TMovingImage >

MeasurementVectorType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_UpperBound {}

mutableprotected

The upper bound for samples in the histogram.

Definition at line 183 of file itkHistogramImageToImageMetric.h.

◆ m_UpperBoundIncreaseFactor

template<typename TFixedImage , typename TMovingImage >

double itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_UpperBoundIncreaseFactor {}

protected

The increase in the upper bound.

Definition at line 186 of file itkHistogramImageToImageMetric.h.

◆ m_UpperBoundSetByUser

template<typename TFixedImage , typename TMovingImage >

bool itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_UpperBoundSetByUser {}

protected

Boolean flag to indicate whether the user supplied upper bounds or whether they should be computed from the max of image intensities

Definition at line 194 of file itkHistogramImageToImageMetric.h.

◆ m_UsePaddingValue

template<typename TFixedImage , typename TMovingImage >

bool itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_UsePaddingValue {}

private

True if those pixels in the fixed image with the same value as the padding value should be ignored when calculating the similarity measure.

Definition at line 229 of file itkHistogramImageToImageMetric.h.

The documentation for this class was generated from the following file:

itkHistogramImageToImageMetric.h

Detailed Description

template<typename TFixedImage, typename TMovingImage> class itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >

Public Types

Public Member Functions

Protected Member Functions

Protected Attributes

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ ConstPointer

◆ FixedImageConstPointerType

◆ FixedImagePixelType

◆ HistogramPointer

◆ HistogramSizeType

◆ HistogramType

◆ MeasurementVectorType

◆ MovingImageConstPointerType

◆ MovingImagePixelType

◆ Pointer

◆ ScalesType

◆ Self

◆ Superclass

Constructor & Destructor Documentation

◆ HistogramImageToImageMetric()

◆ ~HistogramImageToImageMetric()

Member Function Documentation

◆ ComputeHistogram() [1/2]

◆ ComputeHistogram() [2/2]

◆ CopyHistogram()

◆ EvaluateMeasure()

◆ GetDerivative()

◆ GetDerivativeStepLength()

◆ GetDerivativeStepLengthScales()

◆ GetHistogram()

◆ GetHistogramSize()

◆ GetLowerBound()

◆ GetNameOfClass()

◆ GetPaddingValue()

◆ GetUpperBound()

◆ GetUpperBoundIncreaseFactor()

◆ GetUsePaddingValue()

◆ GetValue()

◆ GetValueAndDerivative()

◆ Initialize()

◆ PrintSelf()

◆ SetDerivativeStepLength()

◆ SetDerivativeStepLengthScales()

◆ SetHistogramSize()

◆ SetLowerBound()

◆ SetPaddingValue()

◆ SetTransform()

◆ SetUpperBound()

◆ SetUpperBoundIncreaseFactor()

◆ SetUsePaddingValue()

Member Data Documentation

◆ m_DerivativeStepLength

◆ m_DerivativeStepLengthScales

◆ m_Histogram

◆ m_HistogramSize

◆ m_LowerBound

◆ m_LowerBoundSetByUser

◆ m_PaddingValue

◆ m_UpperBound

◆ m_UpperBoundIncreaseFactor

◆ m_UpperBoundSetByUser

◆ m_UsePaddingValue

template<typename TFixedImage, typename TMovingImage>
class itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >