ITK  5.2.0
Insight Toolkit
Public Types | Public Member Functions | Static Public Member Functions | List of all members
itk::IntermodesThresholdCalculator< THistogram, TOutput > Class Template Reference

#include <itkIntermodesThresholdCalculator.h>

+ Inheritance diagram for itk::IntermodesThresholdCalculator< THistogram, TOutput >:
+ Collaboration diagram for itk::IntermodesThresholdCalculator< THistogram, TOutput >:

Public Types

using ConstPointer = SmartPointer< const Self >
 
using HistogramType = THistogram
 
using InstanceIdentifier = typename HistogramType::InstanceIdentifier
 
using OutputType = TOutput
 
using Pointer = SmartPointer< Self >
 
using Self = IntermodesThresholdCalculator
 
using Superclass = HistogramThresholdCalculator< THistogram, TOutput >
 
- Public Types inherited from itk::HistogramThresholdCalculator< THistogram, TOutput >
using ConstPointer = SmartPointer< const Self >
 
using DecoratedOutputType = SimpleDataObjectDecorator< OutputType >
 
using HistogramType = THistogram
 
using OutputType = TOutput
 
using Pointer = SmartPointer< Self >
 
using Self = HistogramThresholdCalculator
 
using Superclass = ProcessObject
 
- Public Types inherited from itk::ProcessObject
using ConstPointer = SmartPointer< const Self >
 
using DataObjectIdentifierType = DataObject::DataObjectIdentifierType
 
using DataObjectPointer = DataObject::Pointer
 
using DataObjectPointerArray = std::vector< DataObjectPointer >
 
using DataObjectPointerArraySizeType = DataObjectPointerArray::size_type
 
using MultiThreaderType = MultiThreaderBase
 
using NameArray = std::vector< DataObjectIdentifierType >
 
using Pointer = SmartPointer< Self >
 
using Self = ProcessObject
 
using Superclass = Object
 
- Public Types inherited from itk::Object
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = Object
 
using Superclass = LightObject
 
- Public Types inherited from itk::LightObject
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = LightObject
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother () const
 
virtual SizeValueType GetMaximumSmoothingIterations () const
 
virtual const char * GetNameOfClass () const
 
virtual void SetMaximumSmoothingIterations (SizeValueType _arg)
 
- Public Member Functions inherited from itk::HistogramThresholdCalculator< THistogram, TOutput >
const HistogramTypeGetInput () const
 
DecoratedOutputTypeGetOutput ()
 
const OutputTypeGetThreshold ()
 
DataObject::Pointer MakeOutput (DataObjectPointerArraySizeType) override
 
void SetInput (const HistogramType *input)
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData () const
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
NameArray GetInputNames () const
 
DataObjectPointerArray GetInputs ()
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual DataObjectPointerArraySizeType GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
DataObjectPointerArray GetOutputs ()
 
virtual float GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
void IncrementProgress (float increment)
 
virtual DataObjectPointer MakeOutput (const DataObjectIdentifierType &)
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfWorkUnits (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfWorkUnits () const
 
MultiThreaderTypeGetMultiThreader () const
 
void SetMultiThreader (MultiThreaderType *threader)
 
virtual void PrepareOutputs ()
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
unsigned long AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary ()
 
const MetaDataDictionaryGetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetReferenceCount (int) override
 
void UnRegister () const noexcept override
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
void SetMetaDataDictionary (MetaDataDictionary &&rrhs)
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::HistogramThresholdCalculator< THistogram, TOutput >
static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 
using TotalAbsoluteFrequencyType = typename HistogramType::TotalAbsoluteFrequencyType
 
using AbsoluteFrequencyType = typename HistogramType::AbsoluteFrequencyType
 
SizeValueType m_MaximumSmoothingIterations
 
bool m_UseInterMode
 
virtual void SetUseInterMode (bool _arg)
 
virtual bool GetUseInterMode () const
 
virtual void UseInterModeOn ()
 
virtual void UseInterModeOff ()
 
 IntermodesThresholdCalculator ()
 
 ~IntermodesThresholdCalculator () override=default
 
void GenerateData () override
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
bool BimodalTest (const std::vector< double > &h)
 

Additional Inherited Members

- Protected Member Functions inherited from itk::HistogramThresholdCalculator< THistogram, TOutput >
 HistogramThresholdCalculator ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
 ~HistogramThresholdCalculator () override=default
 
- Protected Member Functions inherited from itk::ProcessObject
 ProcessObject ()
 
 ~ProcessObject () override
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void AddInput (DataObject *input)
 
virtual void PushBackInput (const DataObject *input)
 
virtual void PopBackInput ()
 
virtual void PushFrontInput (const DataObject *input)
 
virtual void PopFrontInput ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName () const
 
virtual void SetPrimaryInput (DataObject *input)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual const DataObjectPointerArraySizeTypeGetNumberOfRequiredInputs () const
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
void SetRequiredInputNames (const NameArray &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
void AddOptionalInputName (const DataObjectIdentifierType &)
 
void AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName () const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
virtual void SetPrimaryOutput (DataObject *output)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
virtual void AddOutput (DataObject *output)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual const DataObjectPointerArraySizeTypeGetNumberOfRequiredOutputs () const
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
virtual void VerifyPreconditions () ITKv5_CONST
 
virtual void VerifyInputInformation () ITKv5_CONST
 
virtual void GenerateInputRequestedRegion ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
virtual void GenerateOutputInformation ()
 
virtual void PropagateResetPipeline ()
 
virtual void ReleaseInputs ()
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual bool GetThreaderUpdateProgress () const
 
virtual void ThreaderUpdateProgressOn ()
 
virtual void ThreaderUpdateProgressOff ()
 
virtual void SetThreaderUpdateProgress (bool arg)
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
 ~Object () override
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 
- Static Protected Member Functions inherited from itk::ProcessObject
static constexpr float progressFixedToFloat (uint32_t fixed)
 
static uint32_t progressFloatToFixed (float f)
 
- Protected Attributes inherited from itk::ProcessObject
bool m_Updating
 
TimeStamp m_OutputInformationMTime
 
- Protected Attributes inherited from itk::LightObject
std::atomic< int > m_ReferenceCount
 

Detailed Description

template<typename THistogram, typename TOutput = double>
class itk::IntermodesThresholdCalculator< THistogram, TOutput >

Computes the Intermodes's threshold for an image.

J. M. S. Prewitt and M. L. Mendelsohn, "The analysis of cell images," in Annals of the New York Academy of Sciences, vol. 128, pp. 1035-1053, 1966.

This class is templated over the input histogram type.

Warning
This calculator assumes that the input histogram has only one dimension.
Author
Richard Beare. Department of Medicine, Monash University, Melbourne, Australia.
Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.

This implementation was taken from the Insight Journal paper: https://hdl.handle.net/10380/3279 or http://www.insight-journal.org/browse/publication/811

Definition at line 57 of file itkIntermodesThresholdCalculator.h.

Member Typedef Documentation

◆ AbsoluteFrequencyType

template<typename THistogram , typename TOutput = double>
using itk::IntermodesThresholdCalculator< THistogram, TOutput >::AbsoluteFrequencyType = typename HistogramType::AbsoluteFrequencyType
protected

Select whether midpoint (intermode = true) or minimum between peaks is used. Default is "On".

Definition at line 105 of file itkIntermodesThresholdCalculator.h.

◆ ConstPointer

template<typename THistogram , typename TOutput = double>
using itk::IntermodesThresholdCalculator< THistogram, TOutput >::ConstPointer = SmartPointer<const Self>

Definition at line 66 of file itkIntermodesThresholdCalculator.h.

◆ HistogramType

template<typename THistogram , typename TOutput = double>
using itk::IntermodesThresholdCalculator< THistogram, TOutput >::HistogramType = THistogram

Type definition for the input image.

Definition at line 75 of file itkIntermodesThresholdCalculator.h.

◆ InstanceIdentifier

template<typename THistogram , typename TOutput = double>
using itk::IntermodesThresholdCalculator< THistogram, TOutput >::InstanceIdentifier = typename HistogramType::InstanceIdentifier

Definition at line 78 of file itkIntermodesThresholdCalculator.h.

◆ OutputType

template<typename THistogram , typename TOutput = double>
using itk::IntermodesThresholdCalculator< THistogram, TOutput >::OutputType = TOutput

Definition at line 76 of file itkIntermodesThresholdCalculator.h.

◆ Pointer

template<typename THistogram , typename TOutput = double>
using itk::IntermodesThresholdCalculator< THistogram, TOutput >::Pointer = SmartPointer<Self>

Definition at line 65 of file itkIntermodesThresholdCalculator.h.

◆ Self

template<typename THistogram , typename TOutput = double>
using itk::IntermodesThresholdCalculator< THistogram, TOutput >::Self = IntermodesThresholdCalculator

Standard class type aliases.

Definition at line 63 of file itkIntermodesThresholdCalculator.h.

◆ Superclass

template<typename THistogram , typename TOutput = double>
using itk::IntermodesThresholdCalculator< THistogram, TOutput >::Superclass = HistogramThresholdCalculator<THistogram, TOutput>

Definition at line 64 of file itkIntermodesThresholdCalculator.h.

◆ TotalAbsoluteFrequencyType

template<typename THistogram , typename TOutput = double>
using itk::IntermodesThresholdCalculator< THistogram, TOutput >::TotalAbsoluteFrequencyType = typename HistogramType::TotalAbsoluteFrequencyType
protected

Select whether midpoint (intermode = true) or minimum between peaks is used. Default is "On".

Definition at line 104 of file itkIntermodesThresholdCalculator.h.

Constructor & Destructor Documentation

◆ IntermodesThresholdCalculator()

template<typename THistogram , typename TOutput = double>
itk::IntermodesThresholdCalculator< THistogram, TOutput >::IntermodesThresholdCalculator ( )
inlineprotected

Select whether midpoint (intermode = true) or minimum between peaks is used. Default is "On".

Definition at line 91 of file itkIntermodesThresholdCalculator.h.

◆ ~IntermodesThresholdCalculator()

template<typename THistogram , typename TOutput = double>
itk::IntermodesThresholdCalculator< THistogram, TOutput >::~IntermodesThresholdCalculator ( )
overrideprotecteddefault

Select whether midpoint (intermode = true) or minimum between peaks is used. Default is "On".

Member Function Documentation

◆ BimodalTest()

template<typename THistogram , typename TOutput = double>
bool itk::IntermodesThresholdCalculator< THistogram, TOutput >::BimodalTest ( const std::vector< double > &  h)
private

Select whether midpoint (intermode = true) or minimum between peaks is used. Default is "On".

◆ CreateAnother()

template<typename THistogram , typename TOutput = double>
virtual::itk::LightObject::Pointer itk::IntermodesThresholdCalculator< THistogram, TOutput >::CreateAnother ( ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::HistogramThresholdCalculator< THistogram, TOutput >.

◆ GenerateData()

template<typename THistogram , typename TOutput = double>
void itk::IntermodesThresholdCalculator< THistogram, TOutput >::GenerateData ( )
overrideprotectedvirtual

Select whether midpoint (intermode = true) or minimum between peaks is used. Default is "On".

Reimplemented from itk::ProcessObject.

◆ GetMaximumSmoothingIterations()

template<typename THistogram , typename TOutput = double>
virtual SizeValueType itk::IntermodesThresholdCalculator< THistogram, TOutput >::GetMaximumSmoothingIterations ( ) const
virtual

◆ GetNameOfClass()

template<typename THistogram , typename TOutput = double>
virtual const char* itk::IntermodesThresholdCalculator< THistogram, TOutput >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::HistogramThresholdCalculator< THistogram, TOutput >.

◆ GetUseInterMode()

template<typename THistogram , typename TOutput = double>
virtual bool itk::IntermodesThresholdCalculator< THistogram, TOutput >::GetUseInterMode ( ) const
virtual

Select whether midpoint (intermode = true) or minimum between peaks is used. Default is "On".

◆ New()

template<typename THistogram , typename TOutput = double>
static Pointer itk::IntermodesThresholdCalculator< THistogram, TOutput >::New ( )
static

◆ PrintSelf()

template<typename THistogram , typename TOutput = double>
void itk::IntermodesThresholdCalculator< THistogram, TOutput >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotectedvirtual

Select whether midpoint (intermode = true) or minimum between peaks is used. Default is "On".

Reimplemented from itk::ProcessObject.

◆ SetMaximumSmoothingIterations()

template<typename THistogram , typename TOutput = double>
virtual void itk::IntermodesThresholdCalculator< THistogram, TOutput >::SetMaximumSmoothingIterations ( SizeValueType  _arg)
virtual

◆ SetUseInterMode()

template<typename THistogram , typename TOutput = double>
virtual void itk::IntermodesThresholdCalculator< THistogram, TOutput >::SetUseInterMode ( bool  _arg)
virtual

Select whether midpoint (intermode = true) or minimum between peaks is used. Default is "On".

◆ UseInterModeOff()

template<typename THistogram , typename TOutput = double>
virtual void itk::IntermodesThresholdCalculator< THistogram, TOutput >::UseInterModeOff ( )
virtual

Select whether midpoint (intermode = true) or minimum between peaks is used. Default is "On".

◆ UseInterModeOn()

template<typename THistogram , typename TOutput = double>
virtual void itk::IntermodesThresholdCalculator< THistogram, TOutput >::UseInterModeOn ( )
virtual

Select whether midpoint (intermode = true) or minimum between peaks is used. Default is "On".

Member Data Documentation

◆ m_MaximumSmoothingIterations

template<typename THistogram , typename TOutput = double>
SizeValueType itk::IntermodesThresholdCalculator< THistogram, TOutput >::m_MaximumSmoothingIterations
private

Select whether midpoint (intermode = true) or minimum between peaks is used. Default is "On".

Definition at line 111 of file itkIntermodesThresholdCalculator.h.

◆ m_UseInterMode

template<typename THistogram , typename TOutput = double>
bool itk::IntermodesThresholdCalculator< THistogram, TOutput >::m_UseInterMode
private

Select whether midpoint (intermode = true) or minimum between peaks is used. Default is "On".

Definition at line 112 of file itkIntermodesThresholdCalculator.h.


The documentation for this class was generated from the following file: