ITK  6.0.0
Insight Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Member Functions | Private Attributes | List of all members
itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage > Class Template Reference

#include <itkLabelMapOverlayImageFilter.h>

Detailed Description

template<typename TLabelMap, typename TFeatureImage, typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
class itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >

Apply a colormap to a label map and superimpose it on an image.

Apply a colormap to a label map and put it on top of the feature image. The feature image is typically the image from which the labeling was produced. Use the SetInput function to set the LabelMap, and the SetFeatureImage function to set the feature image.

The set of colors is a good selection of distinct colors. The opacity of the label map can be defined by the user. A background label produce a gray pixel with the same intensity than the input one.

Author
Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.

This implementation was taken from the Insight Journal paper: https://doi.org/10.54294/q6auw4

See also
LabelOverlayImageFilter, LabelOverlayFunctor
LabelMapToRGBImageFilter, LabelMapToBinaryImageFilter, LabelMapToLabelImageFilter
ITK Sphinx Examples:
Examples
SphinxExamples/src/Filtering/ImageFusion/ColorLabeledRegions/Code.cxx, and SphinxExamples/src/Filtering/ImageFusion/OverlayLabelMapOnTopOfAnImage/Code.cxx.

Definition at line 59 of file itkLabelMapOverlayImageFilter.h.

+ Inheritance diagram for itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >:
+ Collaboration diagram for itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >:

Public Types

using ConstPointer = SmartPointer< const Self >
 
using FeatureImageConstPointer = typename FeatureImageType::ConstPointer
 
using FeatureImagePixelType = typename FeatureImageType::PixelType
 
using FeatureImagePointer = typename FeatureImageType::Pointer
 
using FeatureImageRegionType = typename FeatureImageType::RegionType
 
using FeatureImageType = TFeatureImage
 
using FunctorType = typename Functor::LabelOverlayFunctor< FeatureImagePixelType, LabelMapPixelType, OutputImagePixelType >
 
using IndexType = typename OutputImageType::IndexType
 
using LabelMapConstPointer = typename LabelMapType::ConstPointer
 
using LabelMapPixelType = typename LabelMapType::PixelType
 
using LabelMapPointer = typename LabelMapType::Pointer
 
using LabelMapRegionType = typename LabelMapType::RegionType
 
using LabelMapType = TLabelMap
 
using LabelObjectType = typename LabelMapType::LabelObjectType
 
using LabelType = typename LabelObjectType::LabelType
 
using LengthType = typename LabelObjectType::LengthType
 
using OutputImageConstPointer = typename OutputImageType::ConstPointer
 
using OutputImagePixelType = typename OutputImageType::PixelType
 
using OutputImagePointer = typename OutputImageType::Pointer
 
using OutputImageRegionType = typename OutputImageType::RegionType
 
using OutputImageType = TOutputImage
 
using Pointer = SmartPointer< Self >
 
using RegionType = typename OutputImageType::RegionType
 
using Self = LabelMapOverlayImageFilter
 
using SizeType = typename OutputImageType::SizeType
 
using Superclass = LabelMapFilter< TLabelMap, TOutputImage >
 
- Public Types inherited from itk::LabelMapFilter< TLabelMap, TOutputImage >
using ConstPointer = SmartPointer< const Self >
 
using LabelObjectType = typename InputImageType::LabelObjectType
 
using OutputImageConstPointer = typename OutputImageType::ConstPointer
 
using OutputImagePixelType = typename OutputImageType::PixelType
 
using OutputImagePointer = typename OutputImageType::Pointer
 
using OutputImageRegionType = typename OutputImageType::RegionType
 
using OutputImageType = TOutputImage
 
using Pointer = SmartPointer< Self >
 
using Self = LabelMapFilter
 
using Superclass = ImageToImageFilter< TLabelMap, TOutputImage >
 
- Public Types inherited from itk::ImageToImageFilter< TLabelMap, TOutputImage >
using ConstPointer = SmartPointer< const Self >
 
using InputImageConstPointer = typename InputImageType::ConstPointer
 
using InputImagePixelType = typename InputImageType::PixelType
 
using InputImagePointer = typename InputImageType::Pointer
 
using InputImageRegionType = typename InputImageType::RegionType
 
using InputImageType = TLabelMap
 
using Pointer = SmartPointer< Self >
 
using Self = ImageToImageFilter
 
using Superclass = ImageSource< TOutputImage >
 
- Public Types inherited from itk::ImageSource< TOutputImage >
using ConstPointer = SmartPointer< const Self >
 
using DataObjectIdentifierType = Superclass::DataObjectIdentifierType
 
using DataObjectPointer = DataObject::Pointer
 
using DataObjectPointerArraySizeType = Superclass::DataObjectPointerArraySizeType
 
using OutputImagePixelType = typename OutputImageType::PixelType
 
using OutputImagePointer = typename OutputImageType::Pointer
 
using OutputImageRegionType = typename OutputImageType::RegionType
 
using OutputImageType = TOutputImage
 
using Pointer = SmartPointer< Self >
 
using Self = ImageSource
 
using Superclass = ProcessObject
 
- Public Types inherited from itk::ProcessObject
using ConstPointer = SmartPointer< const Self >
 
using DataObjectIdentifierType = DataObject::DataObjectIdentifierType
 
using DataObjectPointer = DataObject::Pointer
 
using DataObjectPointerArray = std::vector< DataObjectPointer >
 
using DataObjectPointerArraySizeType = DataObjectPointerArray::size_type
 
using MultiThreaderType = MultiThreaderBase
 
using NameArray = std::vector< DataObjectIdentifierType >
 
using Pointer = SmartPointer< Self >
 
using Self = ProcessObject
 
using Superclass = Object
 
- Public Types inherited from itk::Object
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = Object
 
using Superclass = LightObject
 
- Public Types inherited from itk::LightObject
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = LightObject
 

Public Member Functions

const FeatureImageTypeGetFeatureImage ()
 
const char * GetNameOfClass () const override
 
void SetFeatureImage (const TFeatureImage *input)
 
void SetInput1 (const TLabelMap *input)
 
void SetInput2 (const TFeatureImage *input)
 
virtual void SetOpacity (double _arg)
 
virtual const double & GetOpacity () const
 
virtual void SetFunctor (const FunctorType &functor)
 
FunctorTypeGetFunctor ()
 
const FunctorTypeGetFunctor () const
 
- Public Member Functions inherited from itk::LabelMapFilter< TLabelMap, TOutputImage >
void EnlargeOutputRequestedRegion (DataObject *) override
 
void GenerateInputRequestedRegion () override
 
const char * GetNameOfClass () const override
 
- Public Member Functions inherited from itk::ImageToImageFilter< TLabelMap, TOutputImage >
const InputImageTypeGetInput () const
 
const InputImageTypeGetInput (unsigned int idx) const
 
void PopBackInput () override
 
void PopFrontInput () override
 
virtual void PushBackInput (const InputImageType *input)
 
virtual void PushFrontInput (const InputImageType *input)
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetInput (const InputImageType *input)
 
virtual void SetInput (unsigned int, const TLabelMap *image)
 
virtual void SetCoordinateTolerance (double _arg)
 
virtual double GetCoordinateTolerance () const
 
virtual void SetDirectionTolerance (double _arg)
 
virtual double GetDirectionTolerance () const
 
- Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageTypeGetOutput (unsigned int idx)
 
OutputImageTypeGetOutput ()
 
const OutputImageTypeGetOutput () const
 
virtual void GraftOutput (DataObject *graft)
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *graft)
 
virtual void GraftNthOutput (unsigned int idx, DataObject *graft)
 
ProcessObject::DataObjectPointer MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override
 
ProcessObject::DataObjectPointer MakeOutput (const ProcessObject::DataObjectIdentifierType &) override
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOn ()
 
virtual const bool & GetAbortGenerateData () const
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
NameArray GetInputNames () const
 
DataObjectPointerArray GetInputs ()
 
MultiThreaderTypeGetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual DataObjectPointerArraySizeType GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
DataObjectPointerArray GetOutputs ()
 
virtual float GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
void IncrementProgress (float increment)
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
void SetMultiThreader (MultiThreaderType *threader)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
virtual void SetReleaseDataFlag (bool val)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void SetNumberOfWorkUnits (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfWorkUnits () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *cmd) const
 
unsigned long AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const
 
LightObject::Pointer CreateAnother () const override
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary ()
 
const MetaDataDictionaryGetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag) const
 
void SetDebug (bool debugFlag) const
 
void SetReferenceCount (int) override
 
void UnRegister () const noexcept override
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
void SetMetaDataDictionary (MetaDataDictionary &&rrhs)
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
Pointer Clone () const
 
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::LabelMapFilter< TLabelMap, TOutputImage >
static Pointer New ()
 
- Static Public Member Functions inherited from itk::ImageToImageFilter< TLabelMap, TOutputImage >
static double GetGlobalDefaultCoordinateTolerance ()
 
static double GetGlobalDefaultDirectionTolerance ()
 
static void SetGlobalDefaultCoordinateTolerance (double)
 
static void SetGlobalDefaultDirectionTolerance (double)
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool val)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Static Public Attributes

static constexpr unsigned int ImageDimension = TOutputImage::ImageDimension
 
static constexpr unsigned int InputImageDimension = TLabelMap::ImageDimension
 
static constexpr unsigned int OutputImageDimension = TOutputImage::ImageDimension
 
- Static Public Attributes inherited from itk::LabelMapFilter< TLabelMap, TOutputImage >
static constexpr unsigned int InputImageDimension
 
static constexpr unsigned int OutputImageDimension
 
- Static Public Attributes inherited from itk::ImageToImageFilter< TLabelMap, TOutputImage >
static constexpr unsigned int InputImageDimension
 
static constexpr unsigned int OutputImageDimension
 
- Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static constexpr unsigned int OutputImageDimension = TOutputImage::ImageDimension
 

Protected Member Functions

void DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) override
 
void EnlargeOutputRequestedRegion (DataObject *) override
 
void GenerateData () override
 
void GenerateInputRequestedRegion () override
 
void GenerateOutputInformation () override
 
 LabelMapOverlayImageFilter ()
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
void SuperclassDynamicTGD (const OutputImageRegionType &outputRegion)
 
void ThreadedProcessLabelObject (LabelObjectType *labelObject) override
 
 ~LabelMapOverlayImageFilter () override=default
 
- Protected Member Functions inherited from itk::LabelMapFilter< TLabelMap, TOutputImage >
void AfterThreadedGenerateData () override
 
void BeforeThreadedGenerateData () override
 
void DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) override
 
virtual InputImageTypeGetLabelMap ()
 
 LabelMapFilter ()
 
void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType) override
 
virtual void ThreadedProcessLabelObject (LabelObjectType *labelObject)
 
 ~LabelMapFilter () override=default
 
- Protected Member Functions inherited from itk::ImageToImageFilter< TLabelMap, TOutputImage >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
 
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 
 ImageToImageFilter ()
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
void VerifyInputInformation () const override
 
 ~ImageToImageFilter () override=default
 
virtual void PushBackInput (const DataObject *input)
 
virtual void PushFrontInput (const DataObject *input)
 
- Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void AllocateOutputs ()
 
void ClassicMultiThread (ThreadFunctionType callbackFunction)
 
virtual const ImageRegionSplitterBaseGetImageRegionSplitter () const
 
 ImageSource ()
 
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
 
 ~ImageSource () override=default
 
virtual bool GetDynamicMultiThreading () const
 
virtual void SetDynamicMultiThreading (bool _arg)
 
virtual void DynamicMultiThreadingOn ()
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
void AddOptionalInputName (const DataObjectIdentifierType &)
 
void AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void AddOutput (DataObject *output)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
virtual const DataObjectPointerArraySizeTypeGetNumberOfRequiredInputs () const
 
virtual const DataObjectPointerArraySizeTypeGetNumberOfRequiredOutputs () const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void PushBackInput (const DataObject *input)
 
virtual void PushFrontInput (const DataObject *input)
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType idx, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType idx, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &name, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *object)
 
virtual void SetPrimaryOutput (DataObject *object)
 
void SetRequiredInputNames (const NameArray &)
 
virtual void VerifyPreconditions () const
 
 ~ProcessObject () override
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName () const
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName () const
 
DataObjectGetOutput (DataObjectPointerArraySizeType i)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType i) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
virtual bool GetThreaderUpdateProgress () const
 
virtual void ThreaderUpdateProgressOn ()
 
virtual void SetThreaderUpdateProgress (bool arg)
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &timeStamp)
 
 ~Object () override
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Attributes

FunctorType m_Functor {}
 
double m_Opacity {}
 

Additional Inherited Members

- Protected Types inherited from itk::ImageToImageFilter< TLabelMap, TOutputImage >
using InputToOutputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::OutputImageDimension, Self::InputImageDimension >
 
using OutputToInputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::InputImageDimension, Self::OutputImageDimension >
 
- Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const ImageRegionSplitterBaseGetGlobalDefaultSplitter ()
 
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION ThreaderCallback (void *arg)
 
- Static Protected Member Functions inherited from itk::ProcessObject
template<typename TSourceObject >
static void MakeRequiredOutputs (TSourceObject &sourceObject, const DataObjectPointerArraySizeType numberOfRequiredOutputs)
 
static constexpr float progressFixedToFloat (uint32_t fixed)
 
static uint32_t progressFloatToFixed (float f)
 
- Protected Attributes inherited from itk::LabelMapFilter< TLabelMap, TOutputImage >
std::mutex m_LabelObjectContainerLock
 
- Protected Attributes inherited from itk::ImageSource< TOutputImage >
bool m_DynamicMultiThreading { true }
 
- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime {}
 
bool m_Updating {}
 
- Protected Attributes inherited from itk::LightObject
std::atomic< int > m_ReferenceCount {}
 

Member Typedef Documentation

◆ ConstPointer

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::ConstPointer = SmartPointer<const Self>

Definition at line 68 of file itkLabelMapOverlayImageFilter.h.

◆ FeatureImageConstPointer

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FeatureImageConstPointer = typename FeatureImageType::ConstPointer

Definition at line 82 of file itkLabelMapOverlayImageFilter.h.

◆ FeatureImagePixelType

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FeatureImagePixelType = typename FeatureImageType::PixelType

Definition at line 84 of file itkLabelMapOverlayImageFilter.h.

◆ FeatureImagePointer

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FeatureImagePointer = typename FeatureImageType::Pointer

Definition at line 81 of file itkLabelMapOverlayImageFilter.h.

◆ FeatureImageRegionType

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FeatureImageRegionType = typename FeatureImageType::RegionType

Definition at line 83 of file itkLabelMapOverlayImageFilter.h.

◆ FeatureImageType

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FeatureImageType = TFeatureImage

Definition at line 80 of file itkLabelMapOverlayImageFilter.h.

◆ FunctorType

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FunctorType = typename Functor::LabelOverlayFunctor<FeatureImagePixelType, LabelMapPixelType, OutputImagePixelType>

Definition at line 96 of file itkLabelMapOverlayImageFilter.h.

◆ IndexType

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::IndexType = typename OutputImageType::IndexType

Definition at line 91 of file itkLabelMapOverlayImageFilter.h.

◆ LabelMapConstPointer

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapConstPointer = typename LabelMapType::ConstPointer

Definition at line 73 of file itkLabelMapOverlayImageFilter.h.

◆ LabelMapPixelType

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapPixelType = typename LabelMapType::PixelType

Definition at line 75 of file itkLabelMapOverlayImageFilter.h.

◆ LabelMapPointer

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapPointer = typename LabelMapType::Pointer

Definition at line 72 of file itkLabelMapOverlayImageFilter.h.

◆ LabelMapRegionType

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapRegionType = typename LabelMapType::RegionType

Definition at line 74 of file itkLabelMapOverlayImageFilter.h.

◆ LabelMapType

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapType = TLabelMap

Some convenient type alias.

Definition at line 71 of file itkLabelMapOverlayImageFilter.h.

◆ LabelObjectType

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelObjectType = typename LabelMapType::LabelObjectType

Definition at line 76 of file itkLabelMapOverlayImageFilter.h.

◆ LabelType

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelType = typename LabelObjectType::LabelType

Definition at line 77 of file itkLabelMapOverlayImageFilter.h.

◆ LengthType

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LengthType = typename LabelObjectType::LengthType

Definition at line 78 of file itkLabelMapOverlayImageFilter.h.

◆ OutputImageConstPointer

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::OutputImageConstPointer = typename OutputImageType::ConstPointer

Definition at line 88 of file itkLabelMapOverlayImageFilter.h.

◆ OutputImagePixelType

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::OutputImagePixelType = typename OutputImageType::PixelType

Definition at line 90 of file itkLabelMapOverlayImageFilter.h.

◆ OutputImagePointer

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::OutputImagePointer = typename OutputImageType::Pointer

Definition at line 87 of file itkLabelMapOverlayImageFilter.h.

◆ OutputImageRegionType

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::OutputImageRegionType = typename OutputImageType::RegionType

Definition at line 89 of file itkLabelMapOverlayImageFilter.h.

◆ OutputImageType

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::OutputImageType = TOutputImage

Definition at line 86 of file itkLabelMapOverlayImageFilter.h.

◆ Pointer

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::Pointer = SmartPointer<Self>

Definition at line 67 of file itkLabelMapOverlayImageFilter.h.

◆ RegionType

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::RegionType = typename OutputImageType::RegionType

Definition at line 93 of file itkLabelMapOverlayImageFilter.h.

◆ Self

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::Self = LabelMapOverlayImageFilter

Standard class type aliases.

Definition at line 65 of file itkLabelMapOverlayImageFilter.h.

◆ SizeType

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::SizeType = typename OutputImageType::SizeType

Definition at line 92 of file itkLabelMapOverlayImageFilter.h.

◆ Superclass

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
using itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::Superclass = LabelMapFilter<TLabelMap, TOutputImage>

Definition at line 66 of file itkLabelMapOverlayImageFilter.h.

Constructor & Destructor Documentation

◆ LabelMapOverlayImageFilter()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapOverlayImageFilter ( )
protected

◆ ~LabelMapOverlayImageFilter()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::~LabelMapOverlayImageFilter ( )
overrideprotecteddefault

Member Function Documentation

◆ DynamicThreadedGenerateData()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::DynamicThreadedGenerateData ( const OutputImageRegionType outputRegionForThread)
overrideprotectedvirtual

If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData() or DynamicThreadedGenerateData(). This superclass will automatically split the output image into a number of pieces, spawn multiple threads, and call (Dynamic)ThreadedGenerateData() in each thread. Prior to spawning threads, the BeforeThreadedGenerateData() method is called. After all the threads have completed, the AfterThreadedGenerateData() method is called. If an image processing filter cannot support threading, that filter should provide an implementation of the GenerateData() method instead of providing an implementation of (Dynamic)ThreadedGenerateData(). If a filter provides a GenerateData() method as its implementation, then the filter is responsible for allocating the output data. If a filter provides a (Dynamic)ThreadedGenerateData() method as its implementation, then the output memory will allocated automatically by this superclass. The (Dynamic)ThreadedGenerateData() method should only produce the output specified by "outputThreadRegion" parameter. (Dynamic)ThreadedGenerateData() cannot write to any other portion of the output image (as this is responsibility of a different thread).

DynamicThreadedGenerateData() is the newer variant without threadId, and is the preferred signature, which is called by default. This variant can split the requested region into different number of pieces depending on current multi-processing load, which allows better load balancing. The non-dynamic (also known as classic) ThreadedGenerateData() signature has threadId, and number of pieces to be split into is known in advance. It is activated by calling this->DynamicMultiThreadingOff(); in derived class constructor. It should be used when the multi-threaded algorithm needs to pre-allocate some data structure with size dependent on the number of pieces (also known as chunks, work units, and sometimes also incorrectly as threads). Only PlatformMultiThreader guarantees that each piece will be processed in its own specific thread. Pool and TBB multi-threaders maintain a pool of threads (normally equal to number of processing cores) which they use to process the pieces. This normally results in a single thread being reused to process multiple work units.

See also
GenerateData(), SplitRequestedRegion()

Reimplemented from itk::ImageSource< TOutputImage >.

◆ EnlargeOutputRequestedRegion()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::EnlargeOutputRequestedRegion ( DataObject )
overrideprotectedvirtual

LabelMapOverlayImageFilter will produce the entire output.

Reimplemented from itk::ProcessObject.

◆ GenerateData()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::GenerateData ( )
overrideprotectedvirtual

A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling DynamicThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter can be threaded, it should NOT provide a GenerateData() method but should provide a DynamicThreadedGenerateData() instead.

See also
ThreadedGenerateData()

Reimplemented from itk::ImageSource< TOutputImage >.

◆ GenerateInputRequestedRegion()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::GenerateInputRequestedRegion ( )
overrideprotectedvirtual

LabelMapOverlayImageFilter needs the entire input be available. Thus, it needs to provide an implementation of GenerateInputRequestedRegion().

Reimplemented from itk::ProcessObject.

◆ GenerateOutputInformation()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::GenerateOutputInformation ( )
overrideprotectedvirtual

Generate the information describing the output data. The default implementation of this method will copy information from the input to the output. A filter may override this method if its output will have different information than its input. For instance, a filter that shrinks an image will need to provide an implementation for this method that changes the spacing of the pixels. Such filters should call their superclass' implementation of this method prior to changing the information values they need (i.e. GenerateOutputInformation() should call Superclass::GenerateOutputInformation() prior to changing the information.

Reimplemented from itk::ProcessObject.

◆ GetFeatureImage()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
const FeatureImageType* itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::GetFeatureImage ( )
inline

Get the feature image

Definition at line 119 of file itkLabelMapOverlayImageFilter.h.

References itk::ProcessObject::GetInput().

◆ GetFunctor() [1/2]

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
FunctorType& itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::GetFunctor ( )
inline

Set/Get the overlay functor - defaults to a reasonable set of colors. This can be used to apply a different colormap.

Definition at line 158 of file itkLabelMapOverlayImageFilter.h.

◆ GetFunctor() [2/2]

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
const FunctorType& itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::GetFunctor ( ) const
inline

Set/Get the overlay functor - defaults to a reasonable set of colors. This can be used to apply a different colormap.

Definition at line 163 of file itkLabelMapOverlayImageFilter.h.

◆ GetNameOfClass()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
const char* itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::GetNameOfClass ( ) const
overridevirtual

◆ GetOpacity()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
virtual const double& itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::GetOpacity ( ) const
virtual

Set/Get the opacity of the colored label image. The value must be between 0 and 1

◆ New()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
static Pointer itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::New ( )
static

Standard New method.

◆ PrintSelf()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageSource< TOutputImage >.

◆ SetFeatureImage()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::SetFeatureImage ( const TFeatureImage *  input)
inline

Set the feature image

Definition at line 111 of file itkLabelMapOverlayImageFilter.h.

◆ SetFunctor()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
virtual void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::SetFunctor ( const FunctorType functor)
inlinevirtual

Set/Get the overlay functor - defaults to a reasonable set of colors. This can be used to apply a different colormap.

Definition at line 149 of file itkLabelMapOverlayImageFilter.h.

◆ SetInput1()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::SetInput1 ( const TLabelMap *  input)
inline

Set the input image

Definition at line 126 of file itkLabelMapOverlayImageFilter.h.

◆ SetInput2()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::SetInput2 ( const TFeatureImage *  input)
inline

Set the feature image

Definition at line 133 of file itkLabelMapOverlayImageFilter.h.

◆ SetOpacity()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
virtual void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::SetOpacity ( double  _arg)
virtual

Set/Get the opacity of the colored label image. The value must be between 0 and 1

◆ SuperclassDynamicTGD()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::SuperclassDynamicTGD ( const OutputImageRegionType outputRegion)
inlineprotected

Definition at line 191 of file itkLabelMapOverlayImageFilter.h.

◆ ThreadedProcessLabelObject()

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
void itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::ThreadedProcessLabelObject ( LabelObjectType labelObject)
overrideprotected

Member Data Documentation

◆ ImageDimension

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
constexpr unsigned int itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::ImageDimension = TOutputImage::ImageDimension
staticconstexpr

Definition at line 101 of file itkLabelMapOverlayImageFilter.h.

◆ InputImageDimension

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
constexpr unsigned int itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::InputImageDimension = TLabelMap::ImageDimension
staticconstexpr

ImageDimension constants

Definition at line 99 of file itkLabelMapOverlayImageFilter.h.

◆ m_Functor

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
FunctorType itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::m_Functor {}
private

Definition at line 207 of file itkLabelMapOverlayImageFilter.h.

◆ m_Opacity

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
double itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::m_Opacity {}
private

Definition at line 206 of file itkLabelMapOverlayImageFilter.h.

◆ OutputImageDimension

template<typename TLabelMap , typename TFeatureImage , typename TOutputImage = Image<RGBPixel<typename TFeatureImage::PixelType>, TFeatureImage::ImageDimension>>
constexpr unsigned int itk::LabelMapOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::OutputImageDimension = TOutputImage::ImageDimension
staticconstexpr

Definition at line 100 of file itkLabelMapOverlayImageFilter.h.


The documentation for this class was generated from the following file: