ITK  5.3.0
Insight Toolkit
itkManifoldParzenWindowsPointSetFunction.h
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18 #ifndef itkManifoldParzenWindowsPointSetFunction_h
19 #define itkManifoldParzenWindowsPointSetFunction_h
20 
21 #include "itkPointSetFunction.h"
22 
24 #include "itkMatrix.h"
25 #include "itkPointSet.h"
26 #include "itkPointsLocator.h"
27 #include "itkVector.h"
28 #include "itkMultiThreaderBase.h"
29 
30 #include <vector>
31 
32 namespace itk
33 {
34 
45 template <typename TPointSet, typename TOutput = double, typename TCoordRep = double>
46 class ITK_TEMPLATE_EXPORT ManifoldParzenWindowsPointSetFunction : public PointSetFunction<TPointSet, TOutput, TCoordRep>
47 {
48 public:
49  ITK_DISALLOW_COPY_AND_MOVE(ManifoldParzenWindowsPointSetFunction);
50 
55 
57  itkNewMacro(Self);
58 
60  static constexpr unsigned int PointDimension = TPointSet::PointDimension;
61 
62  using typename Superclass::InputPointSetType;
63  using typename Superclass::InputPointType;
64 
66  using PointSetType = TPointSet;
68  using PointsContainer = typename PointSetType::PointsContainer;
69  using PointIdentifier = typename PointsContainer::ElementIdentifier;
70 
72  using RealType = TOutput;
73  using OutputType = TOutput;
74  using CoordRepType = TCoordRep;
75 
79 
81  using GaussianPointer = typename GaussianType::Pointer;
82  using GaussianConstPointer = typename GaussianType::ConstPointer;
83  using GaussianContainerType = std::vector<GaussianPointer>;
84  using CovarianceMatrixType = typename GaussianType::CovarianceMatrixType;
85 
93  itkSetMacro(CovarianceKNeighborhood, unsigned int);
94 
96  itkGetConstMacro(CovarianceKNeighborhood, unsigned int);
97 
104  itkSetMacro(EvaluationKNeighborhood, unsigned int);
105 
107  itkGetConstMacro(EvaluationKNeighborhood, unsigned int);
108 
113  itkSetMacro(RegularizationSigma, RealType);
114 
116  itkGetConstMacro(RegularizationSigma, RealType);
117 
123  itkSetMacro(KernelSigma, RealType);
124 
126  itkGetConstMacro(KernelSigma, RealType);
127 
132  itkSetMacro(Normalize, bool);
133 
138  itkGetConstMacro(Normalize, bool);
139 
144  itkBooleanMacro(Normalize);
145 
151  itkSetMacro(UseAnisotropicCovariances, bool);
152 
158  itkGetConstMacro(UseAnisotropicCovariances, bool);
159 
165  itkBooleanMacro(UseAnisotropicCovariances);
166 
168  void
169  SetInputPointSet(const InputPointSetType *) override;
170 
172  TOutput
173  Evaluate(const InputPointType &) const override;
174 
176  GaussianConstPointer GetGaussian(PointIdentifier) const;
177 
179  itkGetModifiableObjectMacro(PointsLocator, PointsLocatorType);
180 
181 protected:
183  ~ManifoldParzenWindowsPointSetFunction() override = default;
184  void
185  PrintSelf(std::ostream & os, Indent indent) const override;
186 
187  void
188  GenerateData();
189 
190 private:
192 
193  unsigned int m_CovarianceKNeighborhood{ 5 };
194  unsigned int m_EvaluationKNeighborhood{ 50 };
197 
199  bool m_Normalize{ true };
200  bool m_UseAnisotropicCovariances{ true };
201 
203 };
204 
205 } // end namespace itk
206 
207 #ifndef ITK_MANUAL_INSTANTIATION
208 # include "itkManifoldParzenWindowsPointSetFunction.hxx"
209 #endif
210 
211 #endif
itk::PointsLocator::NeighborsIdentifierType
typename TreeType::InstanceIdentifierVectorType NeighborsIdentifierType
Definition: itkPointsLocator.h:82
itk::ManifoldParzenWindowsPointSetFunction::m_MultiThreader
MultiThreaderBase::Pointer m_MultiThreader
Definition: itkManifoldParzenWindowsPointSetFunction.h:202
itkMatrix.h
itkGaussianMembershipFunction.h
itk::GTest::TypedefsAndConstructors::Dimension2::PointType
ImageBaseType::PointType PointType
Definition: itkGTestTypedefsAndConstructors.h:51
itk::ManifoldParzenWindowsPointSetFunction
Point set function based on n-dimensional parzen windowing.
Definition: itkManifoldParzenWindowsPointSetFunction.h:46
itkPointSetFunction.h
itk::SmartPointer< Self >
itk::ManifoldParzenWindowsPointSetFunction::CoordRepType
TCoordRep CoordRepType
Definition: itkManifoldParzenWindowsPointSetFunction.h:74
itk::Indent
Control indentation during Print() invocation.
Definition: itkIndent.h:49
itk::PointsLocator
Accelerate geometric searches for points.
Definition: itkPointsLocator.h:42
itk::ManifoldParzenWindowsPointSetFunction::GaussianType
typename Statistics::GaussianMembershipFunction< PointType > GaussianType
Definition: itkManifoldParzenWindowsPointSetFunction.h:80
itk::ManifoldParzenWindowsPointSetFunction::OutputType
TOutput OutputType
Definition: itkManifoldParzenWindowsPointSetFunction.h:73
itk::ManifoldParzenWindowsPointSetFunction::GaussianContainerType
std::vector< GaussianPointer > GaussianContainerType
Definition: itkManifoldParzenWindowsPointSetFunction.h:83
itkPointsLocator.h
itk::ManifoldParzenWindowsPointSetFunction::RealType
TOutput RealType
Definition: itkManifoldParzenWindowsPointSetFunction.h:72
itk::ManifoldParzenWindowsPointSetFunction::CovarianceMatrixType
typename GaussianType::CovarianceMatrixType CovarianceMatrixType
Definition: itkManifoldParzenWindowsPointSetFunction.h:84
itk::ManifoldParzenWindowsPointSetFunction::PointSetType
TPointSet PointSetType
Definition: itkManifoldParzenWindowsPointSetFunction.h:66
itk::ManifoldParzenWindowsPointSetFunction::m_KernelSigma
RealType m_KernelSigma
Definition: itkManifoldParzenWindowsPointSetFunction.h:196
itk::ManifoldParzenWindowsPointSetFunction::GaussianPointer
typename GaussianType::Pointer GaussianPointer
Definition: itkManifoldParzenWindowsPointSetFunction.h:81
itk::LightObject
Light weight base class for most itk classes.
Definition: itkLightObject.h:59
itk::ManifoldParzenWindowsPointSetFunction::m_PointsLocator
PointsLocatorType::Pointer m_PointsLocator
Definition: itkManifoldParzenWindowsPointSetFunction.h:191
itk::ManifoldParzenWindowsPointSetFunction::PointIdentifier
typename PointsContainer::ElementIdentifier PointIdentifier
Definition: itkManifoldParzenWindowsPointSetFunction.h:69
itk::ManifoldParzenWindowsPointSetFunction::NeighborsIdentifierType
typename PointsLocatorType::NeighborsIdentifierType NeighborsIdentifierType
Definition: itkManifoldParzenWindowsPointSetFunction.h:78
itk::PointSetFunction
Evaluates a function of an image at specified position.
Definition: itkPointSetFunction.h:56
itk::ManifoldParzenWindowsPointSetFunction::PointType
typename PointSetType::PointType PointType
Definition: itkManifoldParzenWindowsPointSetFunction.h:67
itk::ManifoldParzenWindowsPointSetFunction::m_Gaussians
GaussianContainerType m_Gaussians
Definition: itkManifoldParzenWindowsPointSetFunction.h:198
itk::PointSetFunction< TPointSet, TOutput, TCoordRep >::InputPointSetType
TPointSet InputPointSetType
Definition: itkPointSetFunction.h:74
itk::Statistics::GaussianMembershipFunction
GaussianMembershipFunction models class membership through a multivariate Gaussian function.
Definition: itkGaussianMembershipFunction.h:56
itk
The "itk" namespace contains all Insight Segmentation and Registration Toolkit (ITK) classes....
Definition: itkAnnulusOperator.h:24
itkMultiThreaderBase.h
itk::ManifoldParzenWindowsPointSetFunction::PointsContainer
typename PointSetType::PointsContainer PointsContainer
Definition: itkManifoldParzenWindowsPointSetFunction.h:68
itkVector.h
itk::ManifoldParzenWindowsPointSetFunction::GaussianConstPointer
typename GaussianType::ConstPointer GaussianConstPointer
Definition: itkManifoldParzenWindowsPointSetFunction.h:82
itkPointSet.h
itk::ManifoldParzenWindowsPointSetFunction::m_RegularizationSigma
RealType m_RegularizationSigma
Definition: itkManifoldParzenWindowsPointSetFunction.h:195
itk::PointSetFunction< TPointSet, TOutput, TCoordRep >::InputPointType
typename InputPointSetType::PointType InputPointType
Definition: itkPointSetFunction.h:77