itkRankHistogram.h

Go to the documentation of this file.

/*=========================================================================
 *
 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         https://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
// histogram from the moving histogram operations
#ifndef itkRankHistogram_h
#define itkRankHistogram_h
 
#include "itkIntTypes.h"
#include "itkNumericTraits.h"
 
#include <map>
#include <vector>
 
namespace itk
{
namespace Function
{
 
/* \class RankHistogram
 * \brief A simple histogram class hierarchy. One specialization will
 * be maps, the other vectors.
 *
 * This version is intended for keeping track of arbitrary ranks. It
 * is based on the code from consolidatedMorphology.
 *
 * This is a modified version for use with masks. Need to allow for
 * the situation in which the map is empty.
 *
 * This code was contributed in the Insight Journal paper:
 * "Efficient implementation of kernel filtering"
 * by Beare R., Lehmann G
 * https://doi.org/10.54294/igq8fn
 *
 * /sa VectorRankHistogram
 */
template <typename TInputPixel>
class RankHistogram
{
public:
  using Compare = std::less<TInputPixel>;
 
  RankHistogram()
  {
    m_Rank = 0.5;
    m_Below = m_Entries = 0;
    // can't set m_RankIt until something has been put in the histogram
    m_Initialized = false;
    if (m_Compare(NumericTraits<TInputPixel>::max(), NumericTraits<TInputPixel>::NonpositiveMin()))
    {
      m_InitVal = NumericTraits<TInputPixel>::max();
    }
    else
    {
      m_InitVal = NumericTraits<TInputPixel>::NonpositiveMin();
    }
    m_RankValue = m_InitVal;
    m_RankIt = m_Map.begin(); // equivalent to setting to the initial value
  }
 
  ~RankHistogram() = default;
 
  RankHistogram &
  operator=(const RankHistogram & hist)
  {
    if (this != &hist)
    {
      m_Map = hist.m_Map;
      m_Rank = hist.m_Rank;
      m_Below = hist.m_Below;
      m_Entries = hist.m_Entries;
      m_InitVal = hist.m_InitVal;
      m_RankValue = hist.m_RankValue;
      m_Initialized = hist.m_Initialized;
      if (m_Initialized)
      {
        m_RankIt = m_Map.find(m_RankValue);
      }
    }
    return *this;
  }
 
  void
  AddPixel(const TInputPixel & p)
  {
    m_Map[p]++;
    if (!m_Initialized)
    {
      m_Initialized = true;
      m_RankIt = m_Map.begin();
      m_Entries = m_Below = 0;
      m_RankValue = p;
    }
    if (m_Compare(p, m_RankValue) || p == m_RankValue)
    {
      ++m_Below;
    }
    ++m_Entries;
  }
 
  void
  RemovePixel(const TInputPixel & p)
  {
    m_Map[p]--;
    if (m_Compare(p, m_RankValue) || p == m_RankValue)
    {
      --m_Below;
    }
    --m_Entries;
    // this is the change that makes this version less efficient. The
    // simplest approach I can think of with maps, though
    if (m_Entries <= 0)
    {
      m_Initialized = false;
      m_Below = 0;
      m_Map.clear();
    }
  }
 
  bool
  IsValid()
  {
    return m_Initialized;
  }
 
  TInputPixel
  GetValueBruteForce()
  {
    SizeValueType count = 0;
    SizeValueType target = static_cast<int>(m_Rank * (m_Entries - 1)) + 1;
    for (typename MapType::iterator it = m_Map.begin(); it != m_Map.end(); ++it)
    {
      count += it->second;
      if (count >= target)
      {
        return it->first;
      }
    }
    return NumericTraits<TInputPixel>::max();
  }
 
  TInputPixel
  GetValue(const TInputPixel &)
  {
    SizeValueType target = (SizeValueType)(m_Rank * (m_Entries - 1)) + 1;
    SizeValueType total = m_Below;
    SizeValueType ThisBin;
    bool          eraseFlag = false;
 
    if (total < target)
    {
      auto                       searchIt = m_RankIt;
      typename MapType::iterator eraseIt;
 
      while (searchIt != m_Map.end())
      {
        // cleaning up the map - probably a better way of organising
        // the loop. Currently makes sure that the search iterator is
        // incremented before deleting
        ++searchIt;
        ThisBin = searchIt->second;
        total += ThisBin;
        if (eraseFlag)
        {
          m_Map.erase(eraseIt);
          eraseFlag = false;
        }
        if (ThisBin <= 0)
        {
          eraseFlag = true;
          eraseIt = searchIt;
        }
        if (total >= target)
        {
          break;
        }
      }
      if (searchIt == m_Map.end())
      {
        --searchIt;
      }
      m_RankValue = searchIt->first;
      m_RankIt = searchIt;
    }
    else
    {
      auto                       searchIt = m_RankIt;
      typename MapType::iterator eraseIt;
 
      while (searchIt != m_Map.begin())
      {
        ThisBin = searchIt->second;
        unsigned int tbelow = total - ThisBin;
        if (tbelow < target) // we've overshot
        {
          break;
        }
        if (eraseFlag)
        {
          m_Map.erase(eraseIt);
          eraseFlag = false;
        }
        if (ThisBin <= 0)
        {
          eraseIt = searchIt;
          eraseFlag = true;
        }
        total = tbelow;
 
        --searchIt;
      }
      m_RankValue = searchIt->first;
      m_RankIt = searchIt;
    }
 
    m_Below = total;
    itkAssertInDebugAndIgnoreInReleaseMacro(m_RankValue == GetValueBruteForce());
    return (m_RankValue);
  }
 
  void
  SetRank(float rank)
  {
    m_Rank = rank;
  }
 
  void
  AddBoundary()
  {}
 
  void
  RemoveBoundary()
  {}
 
  static bool
  UseVectorBasedAlgorithm()
  {
    return false;
  }
 
protected:
  float m_Rank;
 
private:
  using MapType = typename std::map<TInputPixel, SizeValueType, Compare>;
 
  MapType       m_Map;
  SizeValueType m_Below;
  SizeValueType m_Entries;
  TInputPixel   m_RankValue;
  TInputPixel   m_InitVal;
  Compare       m_Compare;
  bool          m_Initialized;
 
  // This iterator will point at the desired rank value
  typename MapType::iterator m_RankIt;
};
 
 
template <typename TInputPixel>
class VectorRankHistogram
{
public:
  using Compare = std::less<TInputPixel>;
 
  VectorRankHistogram()
  {
    m_Size = (OffsetValueType)NumericTraits<TInputPixel>::max() -
             (OffsetValueType)NumericTraits<TInputPixel>::NonpositiveMin() + 1;
    m_Vec.resize(m_Size, 0);
    if (m_Compare(NumericTraits<TInputPixel>::max(), NumericTraits<TInputPixel>::NonpositiveMin()))
    {
      m_InitVal = NumericTraits<TInputPixel>::NonpositiveMin();
    }
    else
    {
      m_InitVal = NumericTraits<TInputPixel>::max();
    }
    m_Entries = m_Below = 0;
    m_RankValue = m_InitVal - NumericTraits<TInputPixel>::NonpositiveMin();
    m_Rank = 0.5;
  }
 
  ~VectorRankHistogram() = default;
 
  bool
  IsValid()
  {
    return m_Entries > 0;
  }
 
  TInputPixel
  GetValueBruteForce()
  {
    SizeValueType count = 0;
    SizeValueType target = (SizeValueType)(m_Rank * (m_Entries - 1)) + 1;
    for (SizeValueType i = 0; i < m_Size; ++i)
    {
      count += m_Vec[i];
      if (count >= target)
      {
        return i + NumericTraits<TInputPixel>::NonpositiveMin();
      }
    }
    return NumericTraits<TInputPixel>::max();
  }
 
  TInputPixel
  GetValue(const TInputPixel &)
  {
    return GetValueBruteForce();
  }
 
  void
  AddPixel(const TInputPixel & p)
  {
    OffsetValueType q = (OffsetValueType)p - NumericTraits<TInputPixel>::NonpositiveMin();
 
    m_Vec[q]++;
    if (m_Compare(p, m_RankValue) || p == m_RankValue)
    {
      ++m_Below;
    }
    ++m_Entries;
  }
 
  void
  RemovePixel(const TInputPixel & p)
  {
    const OffsetValueType q = (OffsetValueType)p - NumericTraits<TInputPixel>::NonpositiveMin();
 
    itkAssertInDebugAndIgnoreInReleaseMacro(q >= 0);
    itkAssertInDebugAndIgnoreInReleaseMacro(q < static_cast<int>(m_Vec.size()));
    itkAssertInDebugAndIgnoreInReleaseMacro(m_Entries >= 1);
    itkAssertInDebugAndIgnoreInReleaseMacro(m_Vec[q] > 0);
 
    m_Vec[q]--;
    --m_Entries;
 
    if (m_Compare(p, m_RankValue) || p == m_RankValue)
    {
      --m_Below;
    }
  }
 
  void
  SetRank(float rank)
  {
    m_Rank = rank;
  }
 
  void
  AddBoundary()
  {}
 
  void
  RemoveBoundary()
  {}
 
  static bool
  UseVectorBasedAlgorithm()
  {
    return true;
  }
 
protected:
  float m_Rank;
 
private:
  using VecType = typename std::vector<SizeValueType>;
 
  VecType       m_Vec;
  SizeValueType m_Size;
  Compare       m_Compare;
  TInputPixel   m_RankValue;
  TInputPixel   m_InitVal;
  int           m_Below;
  int           m_Entries;
};
 
// now create MorphologicalGradientHistogram specializations using the VectorMorphologicalGradientHistogram
// as base class
 
 
template <>
class RankHistogram<unsigned char> : public VectorRankHistogram<unsigned char>
{};
 
template <>
class RankHistogram<signed char> : public VectorRankHistogram<signed char>
{};
 
template <>
class ITK_TEMPLATE_EXPORT RankHistogram<bool> : public VectorRankHistogram<bool>
{};
 
 
} // end namespace Function
} // end namespace itk
#endif