itkVoxBoCUBImageIO.h

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/*=========================================================================
 *
 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         https://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkVoxBoCUBImageIO_h
#define itkVoxBoCUBImageIO_h
 
 
#include <fstream>
#include <string>
#include <map>
#include "itkImageIOBase.h"
#include "itkSpatialOrientation.h"
#include <cstdio>
 
namespace itk
{
// Forward declaration
class GenericCUBFileAdaptor;
 
class VoxBoCUBImageIO : public ImageIOBase
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(VoxBoCUBImageIO);
 
  using Self = VoxBoCUBImageIO;
  using Superclass = ImageIOBase;
  using Pointer = SmartPointer<Self>;
 
  itkNewMacro(Self);
 
  itkOverrideGetNameOfClassMacro(VoxBoCUBImageIO);
 
  /*-------- This part of the interfaces deals with reading data. ----- */
 
  bool
  CanReadFile(const char *) override;
 
  void
  ReadImageInformation() override;
 
  void
  Read(void * buffer) override;
 
  /*-------- This part of the interfaces deals with writing data. ----- */
 
  bool
  CanWriteFile(const char *) override;
 
  void
  WriteImageInformation() override;
 
  void
  Write(const void * buffer) override;
 
  VoxBoCUBImageIO();
  ~VoxBoCUBImageIO() override;
  void
  PrintSelf(std::ostream & os, Indent indent) const override;
 
private:
  bool
  CheckExtension(const char *, bool & isCompressed);
 
  GenericCUBFileAdaptor *
  CreateReader(const char * filename);
 
  GenericCUBFileAdaptor *
  CreateWriter(const char * filename);
 
  GenericCUBFileAdaptor *m_Reader, *m_Writer;
 
  // Initialize the orientation map (from strings to ITK)
  void
  InitializeOrientationMap();
 
  // Orientation stuff
  using OrientationFlags = SpatialOrientationEnums::ValidCoordinateOrientations;
  using OrientationMap = std::map<std::string, OrientationFlags>;
  using InverseOrientationMap = std::map<OrientationFlags, std::string>;
 
  OrientationMap        m_OrientationMap{};
  InverseOrientationMap m_InverseOrientationMap{};
 
  // Method to swap bytes in read buffer
  void
  SwapBytesIfNecessary(void * buffer, BufferSizeType numberOfBytes);
 
  // Strings used in VoxBo files
  static const char * m_VB_IDENTIFIER_SYSTEM;
  static const char * m_VB_IDENTIFIER_FILETYPE;
  static const char * m_VB_DIMENSIONS;
  static const char * m_VB_SPACING;
  static const char * m_VB_ORIGIN;
  static const char * m_VB_DATATYPE;
  static const char * m_VB_BYTEORDER;
  static const char * m_VB_ORIENTATION;
  static const char * m_VB_BYTEORDER_MSB;
  static const char * m_VB_BYTEORDER_LSB;
  static const char * m_VB_DATATYPE_BYTE;
  static const char * m_VB_DATATYPE_INT;
  static const char * m_VB_DATATYPE_FLOAT;
  static const char * m_VB_DATATYPE_DOUBLE;
};
} // end namespace itk
 
#endif // itkVoxBoCUBImageIO_h