ITK  5.2.0
Insight Toolkit
Public Attributes | List of all members
itk::MRCHeaderObject::Header Struct Reference

#include <itkMRCHeaderObject.h>

Public Attributes

float alpha
 
float beta
 
float gamma
 
int16_t idtype
 
int16_t lens
 
int32_t mode
 
int32_t mx
 
int32_t my
 
int32_t mz
 
int16_t nd1
 
int16_t nd2
 
int16_t nint
 
int8_t notused2 [28]
 
int16_t nreal
 
int32_t nxstart
 
int32_t nystart
 
int32_t nzstart
 
float rms
 
float tiltangles [6]
 
int16_t vd1
 
int16_t vd2
 
float xlen
 
float xorg
 
float ylen
 
float yorg
 
float zlen
 
float zorg
 

Detailed Description

plain old data structure of the MRC header as used by IMOD. This header must be 1024 bytes.

The structure of the MRC header taken from: http://bio3d.colorado.edu/imod/doc/mrc_format.txt with permission from David Mastronarde on 8/21/2009

Definition at line 67 of file itkMRCHeaderObject.h.

Member Data Documentation

◆ alpha

float itk::MRCHeaderObject::Header::alpha

cell angles (ignored)

Definition at line 103 of file itkMRCHeaderObject.h.

◆ beta

float itk::MRCHeaderObject::Header::beta

Definition at line 104 of file itkMRCHeaderObject.h.

◆ gamma

float itk::MRCHeaderObject::Header::gamma

map column 1=x,2=y,3=z. (ignored)
map row 1=x,2=y,3=z. (ignored)
map section 1=x,2=y,3=z. (ignored)

Definition at line 105 of file itkMRCHeaderObject.h.

◆ idtype

int16_t itk::MRCHeaderObject::Header::idtype

Definition at line 160 of file itkMRCHeaderObject.h.

◆ lens

int16_t itk::MRCHeaderObject::Header::lens

Definition at line 162 of file itkMRCHeaderObject.h.

◆ mode

int32_t itk::MRCHeaderObject::Header::mode

< Number of Columns < Number of Rows < Number of Sections Types of pixel in image. Values used by IMOD: 0 = unsigned bytes, 1 = signed short integers (16 bits), 2 = float, 3 = short * 2, (used for complex data) 4 = float * 2, (used for complex data) 6 = unsigned 16-bit integers (non-standard) 16 = unsigned char * 3 (for rgb data, non-standard)

Definition at line 85 of file itkMRCHeaderObject.h.

◆ mx

int32_t itk::MRCHeaderObject::Header::mx

Grid size in X, Y, and Z

Definition at line 93 of file itkMRCHeaderObject.h.

◆ my

int32_t itk::MRCHeaderObject::Header::my

Definition at line 94 of file itkMRCHeaderObject.h.

◆ mz

int32_t itk::MRCHeaderObject::Header::mz

Definition at line 95 of file itkMRCHeaderObject.h.

◆ nd1

int16_t itk::MRCHeaderObject::Header::nd1

Definition at line 163 of file itkMRCHeaderObject.h.

◆ nd2

int16_t itk::MRCHeaderObject::Header::nd2

Definition at line 164 of file itkMRCHeaderObject.h.

◆ nint

int16_t itk::MRCHeaderObject::Header::nint

< Minimum pixel value.
< Maximum pixel value.
< Mean pixel value.
< image type
< space group number
< number of bytes in extended header < Creator ID
< extra data (not used)

Definition at line 140 of file itkMRCHeaderObject.h.

◆ notused2

int8_t itk::MRCHeaderObject::Header::notused2[28]

extra data (not used)

Definition at line 157 of file itkMRCHeaderObject.h.

◆ nreal

int16_t itk::MRCHeaderObject::Header::nreal

Definition at line 142 of file itkMRCHeaderObject.h.

◆ nxstart

int32_t itk::MRCHeaderObject::Header::nxstart

Starting point of sub image. (ignored)

Definition at line 88 of file itkMRCHeaderObject.h.

◆ nystart

int32_t itk::MRCHeaderObject::Header::nystart

Definition at line 89 of file itkMRCHeaderObject.h.

◆ nzstart

int32_t itk::MRCHeaderObject::Header::nzstart

Definition at line 90 of file itkMRCHeaderObject.h.

◆ rms

float itk::MRCHeaderObject::Header::rms

Definition at line 180 of file itkMRCHeaderObject.h.

◆ tiltangles

float itk::MRCHeaderObject::Header::tiltangles[6]

Definition at line 169 of file itkMRCHeaderObject.h.

◆ vd1

int16_t itk::MRCHeaderObject::Header::vd1

Definition at line 165 of file itkMRCHeaderObject.h.

◆ vd2

int16_t itk::MRCHeaderObject::Header::vd2

Definition at line 166 of file itkMRCHeaderObject.h.

◆ xlen

float itk::MRCHeaderObject::Header::xlen

Cell size; pixel spacing = xlen/mx

Definition at line 98 of file itkMRCHeaderObject.h.

◆ xorg

float itk::MRCHeaderObject::Header::xorg

Definition at line 172 of file itkMRCHeaderObject.h.

◆ ylen

float itk::MRCHeaderObject::Header::ylen

Definition at line 99 of file itkMRCHeaderObject.h.

◆ yorg

float itk::MRCHeaderObject::Header::yorg

Definition at line 173 of file itkMRCHeaderObject.h.

◆ zlen

float itk::MRCHeaderObject::Header::zlen

Definition at line 100 of file itkMRCHeaderObject.h.

◆ zorg

float itk::MRCHeaderObject::Header::zorg

Contains "MAP "
First byte has 17 for big- or 68 for little-endian

Definition at line 174 of file itkMRCHeaderObject.h.


The documentation for this struct was generated from the following file: