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itk::DeformableSimplexMesh3DFilter

itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh > Class Template Reference
[Mesh Filters, Mesh Segmentation Filters]

#include <itkDeformableSimplexMesh3DFilter.h>

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List of all members.

Detailed Description

template<class TInputMesh, class TOutputMesh>
class itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >

Three-dimensional deformable model for image segmentation.

DeformableSimplexMesh3DFilter is a discrete three-dimensional deformable model, which can be used to deform a 3-D SimplexMesh.

The mesh deformation is constrained by internal forces. The interal force can be scaled via SetAlpha (typical values are 0.01 < alpha < 0.3). The external force is derived from the image one wants to delineate. Therefore an image of type GradientImageType needs to be set by calling SetGradientImage(...). The external forces are scaled via SetBeta (typical values are 0.01 < beta < 1). One still needs to play around with these values.

To control the smoothness of the mesh a rigidity parameter can be adjusted. Low values (1 or 0) allow areas with high curvature. Higher values (around 7 or 8) will make the mesh smoother.

By setting the gamma parameter the regularity of the mesh is controlled. Low values (< 0.03) produce more regular mesh. Higher values ( 0.3 < gamma < 0.2) will allow to move the vertices to regions of higher curvature.

This approach for segmentation follows that of Delingette et al. (1997).

This filter currently assumes that the spacing of the input image is 1.

The user has to set the number of iterations for mesh evolution.

Author:
Thomas Boettger. Division Medical and Biological Informatics, German Cancer Research Center, Heidelberg.

Definition at line 72 of file itkDeformableSimplexMesh3DFilter.h.

Public Types

typedef Image< unsigned char, 3 > BinaryOutput
typedef InputMeshType::CellsContainer::Iterator CellsContainerIterator
typedef InputMeshType::CellsContainerPointer CellsContainerPointer
typedef SmartPointer< const
Self > 		ConstPointer
typedef CovariantVector< typename
VectorType::ValueType, 3 > 		CovariantVectorType
typedef DataObject::Pointer DataObjectPointer
typedef std::vector< DataObjectPointer > DataObjectPointerArray
typedef DataObjectPointerArray::size_type DataObjectPointerArraySizeType
typedef GeometryMapType::Iterator GeometryMapIterator
typedef GeometryMapType::Pointer GeometryMapPointer
typedef InputMeshType::GeometryMapType GeometryMapType
typedef GradientImageType::Pointer GradientImagePointer
typedef GradientImageType::SizeType GradientImageSizeType
typedef Image< GradientType, 3 > GradientImageType
typedef GradientImageType::IndexType GradientIndexType
typedef GradientIndexType::IndexValueType GradientIndexValueType
typedef GradientImageType::PixelType GradientPixelType
typedef CovariantVector< PixelType, 3 > GradientType
typedef IndexSetType::iterator IndexSetIterator
typedef std::set< unsigned
long > 		IndexSetType
typedef InputMeshType::Pointer InputMeshPointer
typedef TInputMesh InputMeshType
typedef InputMeshType::NeighborListType InputNeighbors
typedef InputMeshType::NeighborListType::iterator InputNeighborsIterator
typedef InputMeshType::PointsContainer InputPointsContainer
typedef InputMeshType::PointsContainer::Iterator InputPointsContainerIterator
typedef InputMeshType::PointsContainerPointer InputPointsContainerPointer
typedef Image< float, 3 > MagnitudeOutput
typedef InputMeshType::PointType MeshPointType
typedef NeighborSetType::iterator NeighborSetIterator
typedef std::set< unsigned
long > 		NeighborSetType
typedef OutputMeshType::Pointer OutputMeshPointer
typedef TOutputMesh OutputMeshType
typedef InputMeshType::PixelType PixelType
typedef SmartPointer< Self > Pointer
typedef InputMeshType::PointType PointType
typedef DeformableSimplexMesh3DFilter Self
typedef MeshToMeshFilter<
TInputMesh, TOutputMesh > 		Superclass
typedef PointType::VectorType VectorType
typedef itk::MapContainer<
unsigned long, std::set<
unsigned long > > 		VertexNeighborListType

Public Member Functions

virtual void AbortGenerateDataOff ()
virtual void AbortGenerateDataOn ()
virtual LightObject::Pointer CreateAnother () const
virtual void DebugOff () const
virtual void DebugOn () const
virtual void Delete ()
virtual void EnlargeOutputRequestedRegion (DataObject *)
virtual const bool & GetAbortGenerateData ()
virtual double GetAlpha ()
virtual double GetBeta ()
Command * GetCommand (unsigned long tag)
virtual double GetDamping ()
virtual GeometryMapType * GetData ()
bool GetDebug () const
virtual double GetGamma ()
virtual GradientImagePointer GetGradient ()
DataObjectPointerArray & GetInputs ()
const MetaDataDictionary & GetMetaDataDictionary (void) const
MetaDataDictionary & GetMetaDataDictionary (void)
virtual unsigned long GetMTime () const
MultiThreader * GetMultiThreader ()
virtual const char * GetNameOfClass () const
DataObjectPointerArraySizeType GetNumberOfInputs () const
virtual DataObjectPointerArraySizeType GetNumberOfValidRequiredInputs () const
virtual const float & GetProgress ()
virtual int GetReferenceCount () const
virtual unsigned int GetRigidity ()
virtual int GetStep ()
bool HasObserver (const EventObject &event) const
void InvokeEvent (const EventObject &) const
void InvokeEvent (const EventObject &)
virtual DataObjectPointer MakeOutput (unsigned int idx)
virtual void Modified () const
virtual void PrepareOutputs ()
void Print (std::ostream &os, Indent indent=0) const
virtual void PropagateRequestedRegion (DataObject *output)
virtual void Register () const
void RemoveAllObservers ()
void RemoveObserver (unsigned long tag)
virtual void ResetPipeline ()
virtual void SetAbortGenerateData (bool _arg)
virtual void SetAlpha (double _arg)
virtual void SetBeta (double _arg)
virtual void SetDamping (double _arg)
virtual void SetData (GeometryMapType *_arg)
void SetDebug (bool debugFlag) const
virtual void SetGamma (double _arg)
virtual void SetGradient (GradientImagePointer _arg)
void SetInput (InputMeshType *input)
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
void SetOutput (TOutputMesh *output)
virtual void SetProgress (float _arg)
virtual void SetReferenceCount (int)
virtual void SetRigidity (unsigned int _arg)
virtual void UnRegister () const
virtual void Update ()
virtual void UpdateLargestPossibleRegion ()
virtual void UpdateOutputData (DataObject *output)
virtual void UpdateOutputInformation ()
void UpdateProgress (float amount)
unsigned long AddObserver (const EventObject &event, Command *) const
unsigned long AddObserver (const EventObject &event, Command *)
virtual int GetImageDepth ()
virtual int GetImageHeight ()
virtual int GetImageWidth ()
InputMeshType * GetInput (unsigned int idx)
InputMeshType * GetInput (void)
virtual int GetIterations ()
virtual void SetIterations (int _arg)
DataObjectPointerArraySizeType GetNumberOfOutputs () const
DataObjectPointerArray & GetOutputs ()
virtual const int & GetNumberOfThreads ()
virtual void SetNumberOfThreads (int _arg)
OutputMeshType * GetOutput (unsigned int idx)
OutputMeshType * GetOutput (void)
virtual const bool & GetReleaseDataBeforeUpdateFlag ()
virtual void ReleaseDataBeforeUpdateFlagOff ()
virtual void ReleaseDataBeforeUpdateFlagOn ()
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual bool GetReleaseDataFlag () const
void ReleaseDataFlagOff ()
void ReleaseDataFlagOn ()
virtual void SetReleaseDataFlag (bool flag)
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
virtual void GraftOutput (DataObject *output)

Static Public Member Functions

static void BreakOnError ()
static Pointer New ()
static bool GetGlobalWarningDisplay ()
static void GlobalWarningDisplayOff ()
static void GlobalWarningDisplayOn ()
static void SetGlobalWarningDisplay (bool flag)

Protected Member Functions

virtual void CacheInputReleaseDataFlags ()
PointType ComputeBarycentricCoordinates (PointType p, SimplexMeshGeometry *data)
virtual void ComputeDisplacement ()
virtual void ComputeExternalForce (SimplexMeshGeometry *data)
virtual void ComputeGeometry ()
virtual void ComputeInternalForce (SimplexMeshGeometry *data)
virtual void ComputeOutput ()
 DeformableSimplexMesh3DFilter (const Self &)
 DeformableSimplexMesh3DFilter ()
virtual void GenerateData ()
void GenerateInputRequestedRegion ()
virtual void GenerateOutputInformation ()
virtual void GenerateOutputRequestedRegion (DataObject *output)
virtual void Initialize ()
double L_Func (double r, double d, double phi)
void operator= (const Self &)
bool PrintObservers (std::ostream &os, Indent indent) const
void PrintSelf (std::ostream &os, Indent indent) const
virtual void PropagateResetPipeline ()
virtual void ReleaseInputs ()
virtual void RestoreInputReleaseDataFlags ()
void SetNumberOfInputs (unsigned int num)
void SetNumberOfOutputs (unsigned int num)
virtual void UpdateReferenceMetrics ()
 ~DeformableSimplexMesh3DFilter ()
virtual void AddInput (DataObject *input)
virtual const unsigned int & GetNumberOfRequiredInputs ()
virtual void RemoveInput (DataObject *input)
virtual void SetNthInput (unsigned int num, DataObject *input)
virtual void SetNumberOfRequiredInputs (unsigned int _arg)
virtual void AddOutput (DataObject *output)
virtual const unsigned int & GetNumberOfRequiredOutputs ()
virtual void RemoveOutput (DataObject *output)
virtual void SetNthOutput (unsigned int num, DataObject *output)
virtual void SetNumberOfRequiredOutputs (unsigned int _arg)
const DataObject * GetInput (unsigned int idx) const
const DataObject * GetOutput (unsigned int idx) const
virtual void PopBackInput ()
virtual void PopFrontInput ()
virtual void PushBackInput (const DataObject *input)
virtual void PushFrontInput (const DataObject *input)
virtual void PrintHeader (std::ostream &os, Indent indent) const
virtual void PrintTrailer (std::ostream &os, Indent indent) const

Protected Attributes

double m_Alpha
double m_Beta
double m_Damping
GeometryMapPointer m_Data
double m_Gamma
GradientImagePointer m_Gradient
int m_ImageDepth
int m_ImageHeight
int m_ImageWidth
int m_Iterations
TimeStamp m_OutputInformationMTime
int m_ReferenceCount
SimpleFastMutexLock m_ReferenceCountLock
unsigned int m_Rigidity
int m_Step
bool m_Updating

Member Typedef Documentation

template<class TInputMesh, class TOutputMesh>
typedef Image<unsigned char, 3> itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::BinaryOutput

Definition at line 109 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef InputMeshType::CellsContainer::Iterator itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::CellsContainerIterator

Definition at line 132 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef InputMeshType::CellsContainerPointer itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::CellsContainerPointer

Definition at line 131 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef SmartPointer<const Self> itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::ConstPointer

Reimplemented from itk::MeshToMeshFilter< TInputMesh, TOutputMesh >.

Reimplemented in itk::DeformableSimplexMesh3DBalloonForceFilter< TInputMesh, TOutputMesh >, and itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

Definition at line 83 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef CovariantVector< typename VectorType::ValueType, 3 > itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::CovariantVectorType

Definition at line 103 of file itkDeformableSimplexMesh3DFilter.h.

template<class TOutputMesh>
typedef DataObject::Pointer itk::MeshSource< TOutputMesh >::DataObjectPointer [inherited]

Some convenient typedefs.

Reimplemented from itk::ProcessObject.

Reimplemented in itk::SpatialObjectToPointSetFilter< TInputSpatialObject, TOutputPointSet >.

Definition at line 56 of file itkMeshSource.h.

typedef std::vector<DataObjectPointer> itk::ProcessObject::DataObjectPointerArray [inherited]

STL Array of SmartPointers to DataObjects

Definition at line 103 of file itkProcessObject.h.

typedef DataObjectPointerArray::size_type itk::ProcessObject::DataObjectPointerArraySizeType [inherited]

Size type of an std::vector

Definition at line 112 of file itkProcessObject.h.

template<class TInputMesh, class TOutputMesh>
typedef GeometryMapType::Iterator itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GeometryMapIterator

Definition at line 145 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef GeometryMapType::Pointer itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GeometryMapPointer

Definition at line 144 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef InputMeshType::GeometryMapType itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GeometryMapType

Definition at line 143 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef GradientImageType::Pointer itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GradientImagePointer

Definition at line 112 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef GradientImageType::SizeType itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GradientImageSizeType

Definition at line 116 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef Image<GradientType, 3> itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GradientImageType

Definition at line 108 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef GradientImageType::IndexType itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GradientIndexType

Reimplemented in itk::DeformableSimplexMesh3DBalloonForceFilter< TInputMesh, TOutputMesh >, and itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

Definition at line 113 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef GradientIndexType::IndexValueType itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GradientIndexValueType

Reimplemented in itk::DeformableSimplexMesh3DBalloonForceFilter< TInputMesh, TOutputMesh >, and itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

Definition at line 115 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef GradientImageType::PixelType itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GradientPixelType

Definition at line 114 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef CovariantVector<PixelType, 3> itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GradientType

Image and Image iterator definition.

Definition at line 107 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef IndexSetType::iterator itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::IndexSetIterator

Definition at line 140 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef std::set<unsigned long> itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::IndexSetType

Definition at line 138 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef InputMeshType::Pointer itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::InputMeshPointer

Reimplemented from itk::MeshToMeshFilter< TInputMesh, TOutputMesh >.

Reimplemented in itk::DeformableSimplexMesh3DBalloonForceFilter< TInputMesh, TOutputMesh >, and itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

Definition at line 126 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef TInputMesh itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::InputMeshType

Some typedefs.

Reimplemented from itk::MeshToMeshFilter< TInputMesh, TOutputMesh >.

Reimplemented in itk::DeformableSimplexMesh3DBalloonForceFilter< TInputMesh, TOutputMesh >, and itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

Definition at line 89 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef InputMeshType::NeighborListType itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::InputNeighbors

Definition at line 133 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef InputMeshType::NeighborListType::iterator itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::InputNeighborsIterator

Definition at line 134 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef InputMeshType::PointsContainer itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::InputPointsContainer

Definition at line 96 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef InputMeshType::PointsContainer::Iterator itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::InputPointsContainerIterator

Definition at line 97 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef InputMeshType::PointsContainerPointer itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::InputPointsContainerPointer

Definition at line 95 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef Image<float, 3> itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::MagnitudeOutput

Definition at line 110 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef InputMeshType::PointType itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::MeshPointType

Definition at line 130 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef NeighborSetType::iterator itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::NeighborSetIterator

Definition at line 139 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef std::set<unsigned long> itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::NeighborSetType

Definition at line 137 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef OutputMeshType::Pointer itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::OutputMeshPointer

Reimplemented from itk::MeshSource< TOutputMesh >.

Reimplemented in itk::DeformableSimplexMesh3DBalloonForceFilter< TInputMesh, TOutputMesh >, and itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

Definition at line 127 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef TOutputMesh itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::OutputMeshType

Reimplemented from itk::MeshSource< TOutputMesh >.

Reimplemented in itk::DeformableSimplexMesh3DBalloonForceFilter< TInputMesh, TOutputMesh >, and itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

Definition at line 93 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef InputMeshType::PixelType itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::PixelType

Reimplemented in itk::DeformableSimplexMesh3DBalloonForceFilter< TInputMesh, TOutputMesh >, and itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

Definition at line 104 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef SmartPointer<Self> itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::Pointer

Smart pointer typedef support

Reimplemented from itk::MeshToMeshFilter< TInputMesh, TOutputMesh >.

Reimplemented in itk::DeformableSimplexMesh3DBalloonForceFilter< TInputMesh, TOutputMesh >, and itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

Definition at line 82 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef InputMeshType::PointType itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::PointType

Other definitions.

Reimplemented in itk::DeformableSimplexMesh3DBalloonForceFilter< TInputMesh, TOutputMesh >, and itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

Definition at line 100 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef DeformableSimplexMesh3DFilter itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::Self

Standard "Self" typedef.

Reimplemented from itk::MeshToMeshFilter< TInputMesh, TOutputMesh >.

Reimplemented in itk::DeformableSimplexMesh3DBalloonForceFilter< TInputMesh, TOutputMesh >, and itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

Definition at line 76 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef MeshToMeshFilter<TInputMesh, TOutputMesh> itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::Superclass

Standard "Superclass" typedef.

Reimplemented from itk::MeshToMeshFilter< TInputMesh, TOutputMesh >.

Reimplemented in itk::DeformableSimplexMesh3DBalloonForceFilter< TInputMesh, TOutputMesh >, and itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

Definition at line 79 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef PointType::VectorType itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::VectorType

Definition at line 101 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
typedef itk::MapContainer<unsigned long, std::set<unsigned long> > itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::VertexNeighborListType

Definition at line 136 of file itkDeformableSimplexMesh3DFilter.h.

Constructor & Destructor Documentation

template<class TInputMesh, class TOutputMesh>
itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::DeformableSimplexMesh3DFilter (  )  [protected]

template<class TInputMesh, class TOutputMesh>
itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::~DeformableSimplexMesh3DFilter (  )  [protected]

template<class TInputMesh, class TOutputMesh>
itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::DeformableSimplexMesh3DFilter ( const Self &   )  [protected]

Member Function Documentation

virtual void itk::ProcessObject::AbortGenerateDataOff (  )  [virtual, inherited]

virtual void itk::ProcessObject::AbortGenerateDataOn (  )  [virtual, inherited]

Turn on and off the AbortGenerateData flag.

virtual void itk::ProcessObject::AddInput ( DataObject *  input  )  [protected, virtual, inherited]

unsigned long itk::Object::AddObserver ( const EventObject &  event,
Command *   
) const [inherited]

unsigned long itk::Object::AddObserver ( const EventObject &  event,
Command *   
) [inherited]

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

virtual void itk::ProcessObject::AddOutput ( DataObject *  output  )  [protected, virtual, inherited]

static void itk::LightObject::BreakOnError (  )  [static, inherited]

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

virtual void itk::ProcessObject::CacheInputReleaseDataFlags (  )  [protected, virtual, inherited]

Cache the state of any ReleaseDataFlag's on the inputs. While the filter is executing, we need to set the ReleaseDataFlag's on the inputs to false in case the current filter is implemented using a mini-pipeline (which will try to release the inputs). After the filter finishes, we restore the state of the ReleaseDataFlag's before the call to ReleaseInputs().

template<class TInputMesh, class TOutputMesh>
PointType itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::ComputeBarycentricCoordinates ( PointType  p,
SimplexMeshGeometry *  data 
) [protected]

Method computes the barycentric coordinates of the passed point

template<class TInputMesh, class TOutputMesh>
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::ComputeDisplacement (  )  [protected, virtual]

Computes the displacement of each point. Therefore internal and external forces are computed and multiplied by the constants (alpha and beta) set by the user.

template<class TInputMesh, class TOutputMesh>
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::ComputeExternalForce ( SimplexMeshGeometry *  data  )  [protected, virtual]

Compute the external force component

Reimplemented in itk::DeformableSimplexMesh3DBalloonForceFilter< TInputMesh, TOutputMesh >, and itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

template<class TInputMesh, class TOutputMesh>
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::ComputeGeometry (  )  [protected, virtual]

Compute geometric properties like curvature and normals, which are necessary for the computation of the internal force components for each point of the mesh.

template<class TInputMesh, class TOutputMesh>
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::ComputeInternalForce ( SimplexMeshGeometry *  data  )  [protected, virtual]

Compute the internal force component

template<class TInputMesh, class TOutputMesh>
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::ComputeOutput (  )  [protected, virtual]

At the and of the deformation the output mesh is created by creating a new mesh

virtual LightObject::Pointer itk::Object::CreateAnother (  )  const [virtual, inherited]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightObject.

virtual void itk::Object::DebugOff (  )  const [virtual, inherited]

Turn debugging output off.

virtual void itk::Object::DebugOn (  )  const [virtual, inherited]

Turn debugging output on.

virtual void itk::LightObject::Delete (  )  [virtual, inherited]

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

virtual void itk::ProcessObject::EnlargeOutputRequestedRegion ( DataObject *   )  [inline, virtual, inherited]

Give the process object a chance to indictate that it will produce more output than it was requested to produce. For example, many imaging filters must compute the entire output at once or can only produce output in complete slices. Such filters cannot handle smaller requested regions. These filters must provide an implementation of this method, setting the output requested region to the size they will produce. By default, a process object does not modify the size of the output requested region.

Reimplemented in itk::CurvatureFlowImageFilter< TInputImage, TOutputImage >, itk::ExtensionVelocitiesImageFilter< TLevelSet, TAuxValue, VAuxDimension >, itk::FastMarchingExtensionImageFilter< TLevelSet, TAuxValue, VAuxDimension, TSpeedImage >, itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >, itk::FFTRealToComplexConjugateImageFilter< TPixel, Dimension >, itk::ImagePCAShapeModelEstimator< TInputImage, TOutputImage >, itk::IsoContourDistanceImageFilter< TInputImage, TOutputImage >, itk::IsolatedWatershedImageFilter< TInputImage, TOutputImage >, itk::KLMRegionGrowImageFilter< TInputImage, TOutputImage >, itk::MRFImageFilter< TInputImage, TClassifiedImage >, itk::MultiResolutionPDEDeformableRegistration< TFixedImage, TMovingImage, TDeformationField >, itk::ReinitializeLevelSetImageFilter< TLevelSet >, itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage, TBinaryPriorImage >, itk::WatershedImageFilter< TInputImage >, itk::BlackTopHatImageFilter< TInputImage, TOutputImage, TKernel >, itk::BSplineDecompositionImageFilter< TInputImage, TOutputImage >, itk::ClosingByReconstructionImageFilter< TInputImage, TOutputImage, TKernel >, itk::ConfidenceConnectedImageFilter< TInputImage, TOutputImage >, itk::ConnectedComponentImageFilter< TInputImage, TOutputImage, TMaskImage >, itk::ConnectedThresholdImageFilter< TInputImage, TOutputImage >, itk::ContourDirectedMeanDistanceImageFilter< TInputImage1, TInputImage2 >, itk::ContourMeanDistanceImageFilter< TInputImage1, TInputImage2 >, itk::DirectedHausdorffDistanceImageFilter< TInputImage1, TInputImage2 >, itk::DoubleThresholdImageFilter< TInputImage, TOutputImage >, itk::ExtractOrthogonalSwath2DImageFilter< TImage >, itk::GradientMagnitudeRecursiveGaussianImageFilter< TInputImage, TOutputImage >, itk::GradientRecursiveGaussianImageFilter< TInputImage, TOutputImage >, itk::GrayscaleConnectedClosingImageFilter< TInputImage, TOutputImage >, itk::GrayscaleConnectedOpeningImageFilter< TInputImage, TOutputImage >, itk::GrayscaleFillholeImageFilter< TInputImage, TOutputImage >, itk::GrayscaleGeodesicDilateImageFilter< TInputImage, TOutputImage >, itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >, itk::GrayscaleGrindPeakImageFilter< TInputImage, TOutputImage >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, itk::HausdorffDistanceImageFilter< TInputImage1, TInputImage2 >, itk::HConcaveImageFilter< TInputImage, TOutputImage >, itk::HConvexImageFilter< TInputImage, TOutputImage >, itk::HessianRecursiveGaussianImageFilter< TInputImage, TOutputImage >, itk::HMaximaImageFilter< TInputImage, TOutputImage >, itk::HMinimaImageFilter< TInputImage, TOutputImage >, itk::HoughTransform2DCirclesImageFilter< TInputPixelType, TOutputPixelType >, itk::HoughTransform2DLinesImageFilter< TInputPixelType, TOutputPixelType >, itk::ImportImageFilter< TPixel, VImageDimension >, itk::IsolatedConnectedImageFilter< TInputImage, TOutputImage >, itk::LabelStatisticsImageFilter< TInputImage, TLabelImage >, itk::LaplacianRecursiveGaussianImageFilter< TInputImage, TOutputImage >, itk::MinimumMaximumImageFilter< TInputImage >, itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >, itk::OpeningByReconstructionImageFilter< TInputImage, TOutputImage, TKernel >, itk::OrientImageFilter< TInputImage, TOutputImage >, itk::ReconstructionImageFilter< TInputImage, TOutputImage, TCompare >, itk::RecursiveSeparableImageFilter< TInputImage, TOutputImage >, itk::RegionOfInterestImageFilter< TInputImage, TOutputImage >, itk::ShrinkImageFilter< TInputImage, TOutputImage >, itk::SimilarityIndexImageFilter< TInputImage1, TInputImage2 >, itk::SmoothingRecursiveGaussianImageFilter< TInputImage, TOutputImage >, itk::StatisticsImageFilter< TInputImage >, itk::TobogganImageFilter< TInputImage >, itk::VectorConfidenceConnectedImageFilter< TInputImage, TOutputImage >, itk::WhiteTopHatImageFilter< TInputImage, TOutputImage, TKernel >, itk::ImageFileReader< TOutputImage, ConvertPixelTraits >, itk::ImageSeriesReader< TOutputImage >, itk::MorphologicalWatershedFromMarkersImageFilter< TInputImage, TLabelImage >, itk::MorphologicalWatershedImageFilter< TInputImage, TOutputImage >, itk::RegionalMaximaImageFilter< TInputImage, TOutputImage >, itk::RegionalMinimaImageFilter< TInputImage, TOutputImage >, itk::ValuedRegionalExtremaImageFilter< TInputImage, TOutputImage, TFunction1, TFunction2 >, itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage >, itk::ReconstructionImageFilter< TInputImage, TOutputImage, std::greater< TOutputImage::PixelType > >, itk::ReconstructionImageFilter< TInputImage, TOutputImage, std::less< TOutputImage::PixelType > >, itk::ValuedRegionalExtremaImageFilter< TInputImage, TOutputImage, std::greater< TInputImage::PixelType >, std::greater< TOutputImage::PixelType > >, and itk::ValuedRegionalExtremaImageFilter< TInputImage, TOutputImage, std::less< TInputImage::PixelType >, std::less< TOutputImage::PixelType > >.

Definition at line 225 of file itkProcessObject.h.

template<class TInputMesh, class TOutputMesh>
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GenerateData ( void   )  [protected, virtual]

This method causes the filter to generate its output.

Reimplemented from itk::ProcessObject.

template<class TOutputMesh>
void itk::MeshSource< TOutputMesh >::GenerateInputRequestedRegion (  )  [protected, virtual, inherited]

Requested region of Mesh is specified as i of N unstructured regions. Since all DataObjects should be able to set the requested region in unstructured form, just copy output->RequestedRegion all inputs.

Reimplemented from itk::ProcessObject.

virtual void itk::ProcessObject::GenerateOutputInformation (  )  [protected, virtual, inherited]

Generate the information decribing the output data. The default implementation of this method will copy information from the input to the output. A filter may override this method if its output will have different information than its input. For instance, a filter that shrinks an image will need to provide an implementation for this method that changes the spacing of the pixels. Such filters should call their superclass' implementation of this method prior to changing the information values they need (i.e. GenerateOutputInformation() should call Superclass::GenerateOutputInformation() prior to changing the information.

Reimplemented in itk::BayesianClassifierInitializationImageFilter< TInputImage, TProbabilityPrecisionType >, itk::BinaryMask3DMeshSource< TInputImage, TOutputMesh >, itk::FastMarchingExtensionImageFilter< TLevelSet, TAuxValue, VAuxDimension, TSpeedImage >, itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >, itk::FFTComplexConjugateToRealImageFilter< TPixel, Dimension >, itk::FFTRealToComplexConjugateImageFilter< TPixel, Dimension >, itk::MRFImageFilter< TInputImage, TClassifiedImage >, itk::MultiResolutionPDEDeformableRegistration< TFixedImage, TMovingImage, TDeformationField >, itk::MultiResolutionPyramidImageFilter< TInputImage, TOutputImage >, itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField >, itk::VoronoiDiagram2DGenerator< TCoordType >, itk::AccumulateImageFilter< TInputImage, TOutputImage >, itk::BinaryMaskToNarrowBandPointSetFilter< TInputImage, TOutputMesh >, itk::ChangeInformationImageFilter< TInputImage >, itk::CropImageFilter< TInputImage, TOutputImage >, itk::DeformationFieldSource< TOutputImage >, itk::ExpandImageFilter< TInputImage, TOutputImage >, itk::ExtractImageFilter< TInputImage, TOutputImage >, itk::ExtractOrthogonalSwath2DImageFilter< TImage >, itk::FlipImageFilter< TImage >, itk::GaussianImageSource< TOutputImage >, itk::GradientImageToBloxBoundaryPointImageFilter< TInputImage >, itk::HoughTransform2DLinesImageFilter< TInputPixelType, TOutputPixelType >, itk::ImageToMeshFilter< TInputImage, TOutputMesh >, itk::ImageToParametricSpaceFilter< TInputImage, TOutputMesh >, itk::ImportImageFilter< TPixel, VImageDimension >, itk::InterpolateImagePointsFilter< TInputImage, TOutputImage, TCoordType, InterpolatorType >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::JoinSeriesImageFilter< TInputImage, TOutputImage >, itk::NonThreadedShrinkImageFilter< TInputImage, TOutputImage >, itk::OrientImageFilter< TInputImage, TOutputImage >, itk::PadImageFilter< TInputImage, TOutputImage >, itk::ParametricSpaceToImageSpaceMeshFilter< TInputMesh, TOutputMesh >, itk::PathToImageFilter< TInputPath, TOutputImage >, itk::PermuteAxesImageFilter< TImage >, itk::PointSetToImageFilter< TInputPointSet, TOutputImage >, itk::RandomImageSource< TOutputImage >, itk::RegionOfInterestImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ShrinkImageFilter< TInputImage, TOutputImage >, itk::SpatialObjectToImageFilter< TInputSpatialObject, TOutputImage >, itk::SpatialObjectToPointSetFilter< TInputSpatialObject, TOutputPointSet >, itk::TileImageFilter< TInputImage, TOutputImage >, itk::TriangleMeshToBinaryImageFilter< TInputMesh, TOutputImage >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, TFunction >, itk::VectorExpandImageFilter< TInputImage, TOutputImage >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::VTKImageImport< TOutputImage >, itk::WarpImageFilter< TInputImage, TOutputImage, TDeformationField >, itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >, itk::ImageFileReader< TOutputImage, ConvertPixelTraits >, itk::ImageSeriesReader< TOutputImage >, itk::HistogramToImageFilter< THistogram, TFunction >, itk::Statistics::ImageToListGenerator< TImage, TMaskImage >, itk::ProjectionImageFilter< TInputImage, TOutputImage, TAccumulator >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Sqrt< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::SymmetricEigenAnalysisFunction< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Square< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Sigmoid< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Sin< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::BinaryThreshold< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Cos< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::IntensityLinearTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::ThresholdLabeler< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::MatrixIndexSelection< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::ModulusTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::GradientMagnitude< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::ChangeLabel< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::BoundedReciprocal< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ExpNegative< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::RGBToLuminance< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Acos< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Log10< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ComplexToImaginary< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::IntensityWindowingTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::VectorCast< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ComplexToPhase< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::EdgePotential< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::AccessorFunctor< TInputImage::PixelType, TAccessor > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Atan< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::VectorIndexSelectionCast< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ComplexToReal< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Tan< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Abs< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Log< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Asin< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::TensorFractionalAnisotropyFunction< TInputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::ComplexToModulus< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TFeatureImageType, Superclass::ImageType, itk::Functor::Cast< TFeatureImageType::PixelType, Superclass::ImageType::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Function::Exp< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::NOT< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TLabelImage, TOutputImage, itk::Functor::LabelToRGBFunctor< TLabelImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::VectorMagnitudeLinearTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::TensorRelativeAnisotropyFunction< TInputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::Cast< TInputImage::PixelType, TOutputImage::PixelType > >, itk::UnaryFunctorImageFilter< TInputImage, TOutputImage, itk::Functor::InvertIntensityTransform< TInputImage::PixelType, TOutputImage::PixelType > >, itk::HistogramToImageFilter< THistogram, itk::Function::HistogramLogProbabilityFunction< unsigned long > >, itk::HistogramToImageFilter< THistogram, itk::Function::HistogramIntensityFunction< unsigned long > >, itk::HistogramToImageFilter< THistogram, itk::Function::HistogramProbabilityFunction< unsigned long > >, itk::HistogramToImageFilter< THistogram, itk::Function::HistogramEntropyFunction< unsigned long > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::MedianAccumulator< TInputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::MaximumAccumulator< TInputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::BinaryThresholdAccumulator< TInputImage::PixelType, TOutputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::MinimumAccumulator< TInputImage::PixelType > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::MeanAccumulator< TInputImage::PixelType, TAccumulate > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::StandardDeviationAccumulator< TInputImage::PixelType, TAccumulate > >, itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::SumAccumulator< TInputImage::PixelType, TOutputImage::PixelType > >, and itk::ProjectionImageFilter< TInputImage, TOutputImage, itk::Function::BinaryAccumulator< TInputImage::PixelType, TOutputImage::PixelType > >.

virtual void itk::ProcessObject::GenerateOutputRequestedRegion ( DataObject *  output  )  [protected, virtual, inherited]

Given one output whose requested region has been set, how should the requested regions for the remaining outputs of the process object be set? By default, all the outputs are set to the same requested region. If a filter needs to produce different requested regions for each output, for instance an image processing filter producing several outputs at different resolutions, then that filter may override this method and set the requested regions appropriatedly.

Note that a filter producing multiple outputs of different types is required to override this method. The default implementation can only correctly handle multiple outputs of the same type.

Reimplemented in itk::MultiResolutionPyramidImageFilter< TInputImage, TOutputImage >, itk::RecursiveMultiResolutionPyramidImageFilter< TInputImage, TOutputImage >, itk::watershed::BoundaryResolver< TPixelType, TDimension >, itk::watershed::EquivalenceRelabeler< TScalarType, TImageDimension >, itk::watershed::Relabeler< TScalarType, TImageDimension >, itk::watershed::Segmenter< TInputImage >, itk::watershed::SegmentTreeGenerator< TScalarType >, itk::watershed::Relabeler< InputImageType::PixelType, itkGetStaticConstMacro(ImageDimension)>, and itk::watershed::SegmentTreeGenerator< InputImageType::PixelType >.

virtual const bool& itk::ProcessObject::GetAbortGenerateData (  )  [virtual, inherited]

Get the AbortGenerateData flag for the process object. Process objects may handle premature termination of execution in different ways.

template<class TInputMesh, class TOutputMesh>
virtual double itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetAlpha (  )  [virtual]

Get internal force scaling factor

template<class TInputMesh, class TOutputMesh>
virtual double itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetBeta (  )  [virtual]

Get external force scaling factor

Command* itk::Object::GetCommand ( unsigned long  tag  )  [inherited]

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

template<class TInputMesh, class TOutputMesh>
virtual double itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetDamping (  )  [virtual]

Get reference metrics update scaling factor

template<class TInputMesh, class TOutputMesh>
virtual GeometryMapType* itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetData (  )  [virtual]

bool itk::Object::GetDebug (  )  const [inherited]

Get the value of the debug flag.

template<class TInputMesh, class TOutputMesh>
virtual double itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetGamma (  )  [virtual]

Get reference metrics update scaling factor

static bool itk::Object::GetGlobalWarningDisplay (  )  [static, inherited]

template<class TInputMesh, class TOutputMesh>
virtual GradientImagePointer itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetGradient (  )  [virtual]

Getter for gradient image

template<class TInputMesh, class TOutputMesh>
virtual int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetImageDepth (  )  [virtual]

template<class TInputMesh, class TOutputMesh>
virtual int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetImageHeight (  )  [virtual]

template<class TInputMesh, class TOutputMesh>
virtual int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetImageWidth (  )  [virtual]

Width, height and depth opf image

const DataObject* itk::ProcessObject::GetInput ( unsigned int  idx  )  const [protected, inherited]

template<class TInputMesh, class TOutputMesh>
InputMeshType* itk::MeshToMeshFilter< TInputMesh, TOutputMesh >::GetInput ( unsigned int  idx  )  [inherited]

Method used internally for getting an input.

Reimplemented from itk::ProcessObject.

template<class TInputMesh, class TOutputMesh>
InputMeshType* itk::MeshToMeshFilter< TInputMesh, TOutputMesh >::GetInput ( void   )  [inherited]

Get the mesh input of this process object.

DataObjectPointerArray& itk::ProcessObject::GetInputs (  )  [inline, inherited]

Return an array with all the inputs of this process object. This is useful for tracing back in the pipeline to construct graphs etc.

Definition at line 108 of file itkProcessObject.h.

template<class TInputMesh, class TOutputMesh>
virtual int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetIterations (  )  [virtual]

const MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void   )  const [inherited]

Returns:
A constant reference to this objects MetaDataDictionary.

MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void   )  [inherited]

Returns:
A reference to this objects MetaDataDictionary.
Warning:
This reference may be changed.

virtual unsigned long itk::Object::GetMTime (  )  const [virtual, inherited]

Return this objects modified time.

Reimplemented in itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::ImageAdaptor< TImage, TAccessor >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::MeshSpatialObject< TMesh >, itk::SceneSpatialObject< TSpaceDimension >, itk::SpatialObject< TDimension >, itk::ImageAdaptor< TImage, itk::Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< itk::VectorImage< TPixelType, Dimension >, itk::Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, itk::PixelAccessor< TInternalType, TExternalType > >, itk::ImageAdaptor< TImage, itk::Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, itk::Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::SpatialObject< 3 >, and itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >.

Referenced by itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime().

MultiThreader* itk::ProcessObject::GetMultiThreader (  )  [inline, inherited]

Return the multithreader used by this class.

Definition at line 284 of file itkProcessObject.h.

template<class TInputMesh, class TOutputMesh>
virtual const char* itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetNameOfClass (  )  const [virtual]

Run-time type information (and related methods).

Reimplemented from itk::MeshToMeshFilter< TInputMesh, TOutputMesh >.

Reimplemented in itk::DeformableSimplexMesh3DBalloonForceFilter< TInputMesh, TOutputMesh >, and itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

DataObjectPointerArraySizeType itk::ProcessObject::GetNumberOfInputs (  )  const [inline, inherited]

Get the size of the input vector. This is merely the size of the input vector, not the number of inputs that have valid DataObject's assigned. Use GetNumberOfValidRequiredInputs() to determine how many inputs are non-null.

Definition at line 118 of file itkProcessObject.h.

DataObjectPointerArraySizeType itk::ProcessObject::GetNumberOfOutputs (  )  const [inline, inherited]

Definition at line 135 of file itkProcessObject.h.

virtual const unsigned int& itk::ProcessObject::GetNumberOfRequiredInputs (  )  [protected, virtual, inherited]

virtual const unsigned int& itk::ProcessObject::GetNumberOfRequiredOutputs (  )  [protected, virtual, inherited]

virtual const int& itk::ProcessObject::GetNumberOfThreads (  )  [virtual, inherited]

virtual DataObjectPointerArraySizeType itk::ProcessObject::GetNumberOfValidRequiredInputs (  )  const [virtual, inherited]

Get the number of valid inputs. This is the number of non-null entries in the input vector in the first NumberOfRequiredInputs slots. This method is used to determine whether the necessary required inputs have been set. Subclasses of ProcessObject may override this implementation if the required inputs are not the first slots in input vector.

Reimplemented in itk::MultiResolutionPDEDeformableRegistration< TFixedImage, TMovingImage, TDeformationField >, and itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField >.

const DataObject* itk::ProcessObject::GetOutput ( unsigned int  idx  )  const [protected, inherited]

template<class TOutputMesh>
OutputMeshType* itk::MeshSource< TOutputMesh >::GetOutput ( unsigned int  idx  )  [inherited]

Method used internally for getting an output.

Reimplemented from itk::ProcessObject.

template<class TOutputMesh>
OutputMeshType* itk::MeshSource< TOutputMesh >::GetOutput ( void   )  [inherited]

Get the mesh output of this process object.

Reimplemented in itk::ImageToMeshFilter< TInputImage, TOutputMesh >.

DataObjectPointerArray& itk::ProcessObject::GetOutputs (  )  [inline, inherited]

Return an array with all the outputs of this process object. This is useful for tracing forward in the pipeline to contruct graphs etc.

Definition at line 133 of file itkProcessObject.h.

virtual const float& itk::ProcessObject::GetProgress (  )  [virtual, inherited]

Get the execution progress of a process object. The progress is a floating number in [0,1] with 0 meaning no progress and 1 meaning the filter has completed execution.

virtual int itk::LightObject::GetReferenceCount (  )  const [inline, virtual, inherited]

Gets the reference count on this object.

Definition at line 98 of file itkLightObject.h.

virtual const bool& itk::ProcessObject::GetReleaseDataBeforeUpdateFlag (  )  [virtual, inherited]

virtual bool itk::ProcessObject::GetReleaseDataFlag (  )  const [virtual, inherited]

template<class TInputMesh, class TOutputMesh>
virtual unsigned int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetRigidity (  )  [virtual]

control smoothness of the mesh

template<class TInputMesh, class TOutputMesh>
virtual int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetStep (  )  [virtual]

current iteration number

static void itk::Object::GlobalWarningDisplayOff (  )  [inline, static, inherited]

Definition at line 100 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

static void itk::Object::GlobalWarningDisplayOn (  )  [inline, static, inherited]

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

template<class TOutputMesh>
virtual void itk::MeshSource< TOutputMesh >::GraftNthOutput ( unsigned int  idx,
DataObject *  output 
) [virtual, inherited]

template<class TOutputMesh>
virtual void itk::MeshSource< TOutputMesh >::GraftOutput ( DataObject *  output  )  [virtual, inherited]

Graft the specified DataObject onto this ProcessObject's output. This method grabs a handle to the specified DataObject's bulk data to used as its output's own bulk data. It also copies the region ivars (RequestedRegion, BufferedRegion, LargestPossibleRegion) and meta-data (Spacing, Origin) from the specified data object into this filter's output data object. Most importantly, however, it leaves the Source ivar untouched so the original pipeline routing is intact. This method is used when a process object is implemented using a mini-pipeline which is defined in its GenerateData() method. The usage is:

    // setup the mini-pipeline to process the input to this filter
    firstFilterInMiniPipeline->SetInput( this->GetInput() );

    // setup the mini-pipeline to calculate the correct regions
    // and write to the appropriate bulk data block
    lastFilterInMiniPipeline->GraftOutput( this->GetOutput() );

    // execute the mini-pipeline
    lastFilterInMiniPipeline->Update();

    // graft the mini-pipeline output back onto this filter's output.
    // this is needed to get the appropriate regions passed back.
    this->GraftOutput( lastFilterInMiniPipeline->GetOutput() );

For proper pipeline execution, a filter using a mini-pipeline must implement the GenerateInputRequestedRegion(), GenerateOutputRequestedRegion(), GenerateOutputInformation() and EnlargeOutputRequestedRegion() methods as necessary to reflect how the mini-pipeline will execute (in other words, the outer filter's pipeline mechanism must be consistent with what the mini-pipeline will do).

bool itk::Object::HasObserver ( const EventObject &  event  )  const [inherited]

Return true if an observer is registered for this event.

template<class TInputMesh, class TOutputMesh>
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::Initialize (  )  [protected, virtual]

Initializes the datastructures necessary for mesh deformation with the values from the passed input mesh.

void itk::Object::InvokeEvent ( const EventObject &   )  const [inherited]

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

void itk::Object::InvokeEvent ( const EventObject &   )  [inherited]

Call Execute on all the Commands observing this event id.

template<class TInputMesh, class TOutputMesh>
double itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::L_Func ( double  r,
double  d,
double  phi 
) [protected]

L function implemented follwoing the paper of Delingette

template<class TOutputMesh>
virtual DataObjectPointer itk::MeshSource< TOutputMesh >::MakeOutput ( unsigned int  idx  )  [virtual, inherited]

Make a DataObject of the correct type to used as the specified output. Every ProcessObject subclass must be able to create a DataObject that can be used as a specified output. This method is automatically called when DataObject::DisconnectPipeline() is called. DataObject::DisconnectPipeline, disconnects a data object from being an output of its current source. When the data object is disconnected, the ProcessObject needs to construct a replacement output data object so that the ProcessObject is in a valid state. So DataObject::DisconnectPipeline eventually calls ProcessObject::MakeOutput. Note that MakeOutput always returns a SmartPointer to a DataObject. If a subclass of MeshSource has multiple outputs of different types, then that class must provide an implementation of MakeOutput().

Reimplemented from itk::ProcessObject.

Reimplemented in itk::ImageToMeshFilter< TInputImage, TOutputMesh >.

virtual void itk::Object::Modified (  )  const [virtual, inherited]

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Reimplemented in itk::NormalizeImageFilter< TInputImage, TOutputImage >, itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, itk::Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< itk::VectorImage< TPixelType, Dimension >, itk::Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, itk::PixelAccessor< TInternalType, TExternalType > >, itk::ImageAdaptor< TImage, itk::Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, itk::Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, and itk::ImageAdaptor< TImage, itk::Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >.

Referenced by itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), itk::HistogramAlgorithmBase< TInputHistogram >::SetInputHistogram(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints1(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints2(), itk::NonUniformBSpline< TDimension >::SetSplineOrder(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), and itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation().

template<class TInputMesh, class TOutputMesh>
static Pointer itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::New (  )  [static]

Method of creation through the object factory.

Reimplemented from itk::MeshToMeshFilter< TInputMesh, TOutputMesh >.

Reimplemented in itk::DeformableSimplexMesh3DBalloonForceFilter< TInputMesh, TOutputMesh >, and itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

template<class TInputMesh, class TOutputMesh>
void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::operator= ( const Self &   )  [protected]

Reimplemented in itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

virtual void itk::ProcessObject::PopBackInput (  )  [protected, virtual, inherited]

Reimplemented in itk::ImageToImageFilter< TInputImage, TOutputImage >, itk::ImageToImageFilter< Superclass::ImageType, Superclass::ImageType >, itk::ImageToImageFilter< TSpeedImage, TLevelSet >, itk::ImageToImageFilter< TDeformationField, TDeformationField >, itk::ImageToImageFilter< TLabelImage, TOutputImage >, itk::ImageToImageFilter< TInputImage, TInputImage >, itk::ImageToImageFilter< TInputImage, itk::VectorImage< TInputImage::InternalPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TInputImage, TSparseOutputImage >, itk::ImageToImageFilter< itk::Image< TInputPixelType, 2 >, itk::Image< TOutputPixelType, 2 > >, itk::ImageToImageFilter< itk::Image< itk::SymmetricSecondRankTensor< double, 3 >, 3 >, itk::Image< TPixel, 3 > >, itk::ImageToImageFilter< TInputImage, TLabelImage >, itk::ImageToImageFilter< itk::BloxBoundaryPointImage< dim >, itk::BloxCoreAtomImage< dim > >, itk::ImageToImageFilter< TFeatureImageType, Superclass::ImageType >, itk::ImageToImageFilter< TInputImage1, TOutputImage >, itk::ImageToImageFilter< TImageType, TImageType >, itk::ImageToImageFilter< TInputImage, itk::Image< unsigned char,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< itk::Image< std::complex< TPixel >, Dimension >, itk::Image< TPixel, Dimension > >, itk::ImageToImageFilter< TInputImage, itk::Image< itk::CovariantVector< TOutputValueType,::itk::GetImageDimension< TInputImage >::ImageDimension >,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TInputImage, itk::VectorImage< TProbabilityPrecisionType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< itk::Image< TReferenceImagePixelType, 3 >, itk::Image< itk::DiffusionTensor3D< TTensorPixelType >, 3 > >, itk::ImageToImageFilter< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< itk::Image< TPixel, Dimension >, itk::Image< std::complex< TPixel >, Dimension > >, itk::ImageToImageFilter< TInputImage1, itk::Functor::MakeJoin< TInputImage1, TInputImage2 >::ImageType >, itk::ImageToImageFilter< TInputImage, TClassifiedImage >, itk::ImageToImageFilter< TInputImage, TEigenValueImage >, itk::ImageToImageFilter< TInputImage1, TInputImage1 >, itk::ImageToImageFilter< TInputVectorImage, itk::Image< TLabelsType,::itk::GetImageDimension< TInputVectorImage >::ImageDimension > >, itk::ImageToImageFilter< TLevelSet, TLevelSet >, itk::ImageToImageFilter< TInputImage, itk::BloxBoundaryPointImage< ::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TMovingImage, TFixedImage >, itk::ImageToImageFilter< TInputImage, itk::Image< unsigned long,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TInputImage, itk::Image< itk::CovariantVector< TDataType,::itk::GetImageDimension< TInputImage >::ImageDimension >,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TSourceImage, itk::BloxBoundaryProfileImage< ::itk::GetImageDimension< TSourceImage >::ImageDimension > >, itk::ImageToImageFilter< TInputImageType, TSparseOutputImageType >, and itk::ImageToImageFilter< TImage, TImage >.

virtual void itk::ProcessObject::PopFrontInput (  )  [protected, virtual, inherited]

Reimplemented in itk::ImageToImageFilter< TInputImage, TOutputImage >, itk::ImageToImageFilter< Superclass::ImageType, Superclass::ImageType >, itk::ImageToImageFilter< TSpeedImage, TLevelSet >, itk::ImageToImageFilter< TDeformationField, TDeformationField >, itk::ImageToImageFilter< TLabelImage, TOutputImage >, itk::ImageToImageFilter< TInputImage, TInputImage >, itk::ImageToImageFilter< TInputImage, itk::VectorImage< TInputImage::InternalPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TInputImage, TSparseOutputImage >, itk::ImageToImageFilter< itk::Image< TInputPixelType, 2 >, itk::Image< TOutputPixelType, 2 > >, itk::ImageToImageFilter< itk::Image< itk::SymmetricSecondRankTensor< double, 3 >, 3 >, itk::Image< TPixel, 3 > >, itk::ImageToImageFilter< TInputImage, TLabelImage >, itk::ImageToImageFilter< itk::BloxBoundaryPointImage< dim >, itk::BloxCoreAtomImage< dim > >, itk::ImageToImageFilter< TFeatureImageType, Superclass::ImageType >, itk::ImageToImageFilter< TInputImage1, TOutputImage >, itk::ImageToImageFilter< TImageType, TImageType >, itk::ImageToImageFilter< TInputImage, itk::Image< unsigned char,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< itk::Image< std::complex< TPixel >, Dimension >, itk::Image< TPixel, Dimension > >, itk::ImageToImageFilter< TInputImage, itk::Image< itk::CovariantVector< TOutputValueType,::itk::GetImageDimension< TInputImage >::ImageDimension >,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TInputImage, itk::VectorImage< TProbabilityPrecisionType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< itk::Image< TReferenceImagePixelType, 3 >, itk::Image< itk::DiffusionTensor3D< TTensorPixelType >, 3 > >, itk::ImageToImageFilter< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< itk::Image< TPixel, Dimension >, itk::Image< std::complex< TPixel >, Dimension > >, itk::ImageToImageFilter< TInputImage1, itk::Functor::MakeJoin< TInputImage1, TInputImage2 >::ImageType >, itk::ImageToImageFilter< TInputImage, TClassifiedImage >, itk::ImageToImageFilter< TInputImage, TEigenValueImage >, itk::ImageToImageFilter< TInputImage1, TInputImage1 >, itk::ImageToImageFilter< TInputVectorImage, itk::Image< TLabelsType,::itk::GetImageDimension< TInputVectorImage >::ImageDimension > >, itk::ImageToImageFilter< TLevelSet, TLevelSet >, itk::ImageToImageFilter< TInputImage, itk::BloxBoundaryPointImage< ::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TMovingImage, TFixedImage >, itk::ImageToImageFilter< TInputImage, itk::Image< unsigned long,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TInputImage, itk::Image< itk::CovariantVector< TDataType,::itk::GetImageDimension< TInputImage >::ImageDimension >,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TSourceImage, itk::BloxBoundaryProfileImage< ::itk::GetImageDimension< TSourceImage >::ImageDimension > >, itk::ImageToImageFilter< TInputImageType, TSparseOutputImageType >, and itk::ImageToImageFilter< TImage, TImage >.

virtual void itk::ProcessObject::PrepareOutputs (  )  [virtual, inherited]

An opportunity to deallocate a ProcessObject's bulk data storage. Some filters may wish to reuse existing bulk data storage to avoid unnecessary deallocation/allocation sequences. The default implementation calls Initialize() on each output. DataObject::Initialize() frees its bulk data by default.

Reimplemented in itk::WatershedImageFilter< TInputImage >.

void itk::LightObject::Print ( std::ostream &  os,
Indent  indent = 0 
) const [inherited]

Cause the object to print itself out.

Referenced by itk::WeakPointer< itk::ProcessObject >::Print().

virtual void itk::LightObject::PrintHeader ( std::ostream &  os,
Indent  indent 
) const [protected, virtual, inherited]

bool itk::Object::PrintObservers ( std::ostream &  os,
Indent  indent 
) const [protected, inherited]

template<class TInputMesh, class TOutputMesh>
void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const [protected, virtual]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::MeshSource< TOutputMesh >.

Reimplemented in itk::DeformableSimplexMesh3DBalloonForceFilter< TInputMesh, TOutputMesh >, and itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

virtual void itk::LightObject::PrintTrailer ( std::ostream &  os,
Indent  indent 
) const [protected, virtual, inherited]

virtual void itk::ProcessObject::PropagateRequestedRegion ( DataObject *  output  )  [virtual, inherited]

Send the requested region information back up the pipeline (to the filters that preceed this one).

Reimplemented in itk::VTKImageImport< TOutputImage >.

virtual void itk::ProcessObject::PropagateResetPipeline (  )  [protected, virtual, inherited]

Propagate a call to ResetPipeline() up the pipeline. Called only from DataObject.

virtual void itk::ProcessObject::PushBackInput ( const DataObject *  input  )  [protected, virtual, inherited]

Push/Pop an input of this process object. These methods allow a filter to model its input vector as a queue or stack. These routines may not be appropriate for all filters, especially filters with different types of inputs. These routines follow the semantics of STL.

Reimplemented in itk::ImageToImageFilter< TInputImage, TOutputImage >, itk::ImageToImageFilter< Superclass::ImageType, Superclass::ImageType >, itk::ImageToImageFilter< TSpeedImage, TLevelSet >, itk::ImageToImageFilter< TDeformationField, TDeformationField >, itk::ImageToImageFilter< TLabelImage, TOutputImage >, itk::ImageToImageFilter< TInputImage, TInputImage >, itk::ImageToImageFilter< TInputImage, itk::VectorImage< TInputImage::InternalPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TInputImage, TSparseOutputImage >, itk::ImageToImageFilter< itk::Image< TInputPixelType, 2 >, itk::Image< TOutputPixelType, 2 > >, itk::ImageToImageFilter< itk::Image< itk::SymmetricSecondRankTensor< double, 3 >, 3 >, itk::Image< TPixel, 3 > >, itk::ImageToImageFilter< TInputImage, TLabelImage >, itk::ImageToImageFilter< itk::BloxBoundaryPointImage< dim >, itk::BloxCoreAtomImage< dim > >, itk::ImageToImageFilter< TFeatureImageType, Superclass::ImageType >, itk::ImageToImageFilter< TInputImage1, TOutputImage >, itk::ImageToImageFilter< TImageType, TImageType >, itk::ImageToImageFilter< TInputImage, itk::Image< unsigned char,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< itk::Image< std::complex< TPixel >, Dimension >, itk::Image< TPixel, Dimension > >, itk::ImageToImageFilter< TInputImage, itk::Image< itk::CovariantVector< TOutputValueType,::itk::GetImageDimension< TInputImage >::ImageDimension >,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TInputImage, itk::VectorImage< TProbabilityPrecisionType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< itk::Image< TReferenceImagePixelType, 3 >, itk::Image< itk::DiffusionTensor3D< TTensorPixelType >, 3 > >, itk::ImageToImageFilter< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< itk::Image< TPixel, Dimension >, itk::Image< std::complex< TPixel >, Dimension > >, itk::ImageToImageFilter< TInputImage1, itk::Functor::MakeJoin< TInputImage1, TInputImage2 >::ImageType >, itk::ImageToImageFilter< TInputImage, TClassifiedImage >, itk::ImageToImageFilter< TInputImage, TEigenValueImage >, itk::ImageToImageFilter< TInputImage1, TInputImage1 >, itk::ImageToImageFilter< TInputVectorImage, itk::Image< TLabelsType,::itk::GetImageDimension< TInputVectorImage >::ImageDimension > >, itk::ImageToImageFilter< TLevelSet, TLevelSet >, itk::ImageToImageFilter< TInputImage, itk::BloxBoundaryPointImage< ::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TMovingImage, TFixedImage >, itk::ImageToImageFilter< TInputImage, itk::Image< unsigned long,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TInputImage, itk::Image< itk::CovariantVector< TDataType,::itk::GetImageDimension< TInputImage >::ImageDimension >,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TSourceImage, itk::BloxBoundaryProfileImage< ::itk::GetImageDimension< TSourceImage >::ImageDimension > >, itk::ImageToImageFilter< TInputImageType, TSparseOutputImageType >, and itk::ImageToImageFilter< TImage, TImage >.

virtual void itk::ProcessObject::PushFrontInput ( const DataObject *  input  )  [protected, virtual, inherited]

Reimplemented in itk::ImageToImageFilter< TInputImage, TOutputImage >, itk::ImageToImageFilter< Superclass::ImageType, Superclass::ImageType >, itk::ImageToImageFilter< TSpeedImage, TLevelSet >, itk::ImageToImageFilter< TDeformationField, TDeformationField >, itk::ImageToImageFilter< TLabelImage, TOutputImage >, itk::ImageToImageFilter< TInputImage, TInputImage >, itk::ImageToImageFilter< TInputImage, itk::VectorImage< TInputImage::InternalPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TInputImage, TSparseOutputImage >, itk::ImageToImageFilter< itk::Image< TInputPixelType, 2 >, itk::Image< TOutputPixelType, 2 > >, itk::ImageToImageFilter< itk::Image< itk::SymmetricSecondRankTensor< double, 3 >, 3 >, itk::Image< TPixel, 3 > >, itk::ImageToImageFilter< TInputImage, TLabelImage >, itk::ImageToImageFilter< itk::BloxBoundaryPointImage< dim >, itk::BloxCoreAtomImage< dim > >, itk::ImageToImageFilter< TFeatureImageType, Superclass::ImageType >, itk::ImageToImageFilter< TInputImage1, TOutputImage >, itk::ImageToImageFilter< TImageType, TImageType >, itk::ImageToImageFilter< TInputImage, itk::Image< unsigned char,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< itk::Image< std::complex< TPixel >, Dimension >, itk::Image< TPixel, Dimension > >, itk::ImageToImageFilter< TInputImage, itk::Image< itk::CovariantVector< TOutputValueType,::itk::GetImageDimension< TInputImage >::ImageDimension >,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TInputImage, itk::VectorImage< TProbabilityPrecisionType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< itk::Image< TReferenceImagePixelType, 3 >, itk::Image< itk::DiffusionTensor3D< TTensorPixelType >, 3 > >, itk::ImageToImageFilter< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< itk::Image< TPixel, Dimension >, itk::Image< std::complex< TPixel >, Dimension > >, itk::ImageToImageFilter< TInputImage1, itk::Functor::MakeJoin< TInputImage1, TInputImage2 >::ImageType >, itk::ImageToImageFilter< TInputImage, TClassifiedImage >, itk::ImageToImageFilter< TInputImage, TEigenValueImage >, itk::ImageToImageFilter< TInputImage1, TInputImage1 >, itk::ImageToImageFilter< TInputVectorImage, itk::Image< TLabelsType,::itk::GetImageDimension< TInputVectorImage >::ImageDimension > >, itk::ImageToImageFilter< TLevelSet, TLevelSet >, itk::ImageToImageFilter< TInputImage, itk::BloxBoundaryPointImage< ::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TMovingImage, TFixedImage >, itk::ImageToImageFilter< TInputImage, itk::Image< unsigned long,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TInputImage, itk::Image< itk::CovariantVector< TDataType,::itk::GetImageDimension< TInputImage >::ImageDimension >,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::ImageToImageFilter< TSourceImage, itk::BloxBoundaryProfileImage< ::itk::GetImageDimension< TSourceImage >::ImageDimension > >, itk::ImageToImageFilter< TInputImageType, TSparseOutputImageType >, and itk::ImageToImageFilter< TImage, TImage >.

virtual void itk::Object::Register (  )  const [virtual, inherited]

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

virtual void itk::ProcessObject::ReleaseDataBeforeUpdateFlagOff (  )  [virtual, inherited]

virtual void itk::ProcessObject::ReleaseDataBeforeUpdateFlagOn (  )  [virtual, inherited]

void itk::ProcessObject::ReleaseDataFlagOff (  )  [inline, inherited]

Definition at line 257 of file itkProcessObject.h.

void itk::ProcessObject::ReleaseDataFlagOn (  )  [inline, inherited]

Definition at line 256 of file itkProcessObject.h.

virtual void itk::ProcessObject::ReleaseInputs (  )  [protected, virtual, inherited]

A filter may need to release its input's bulk data after it has finished calculating a new output. The filter may need to release the inputs because the user has turned on the ReleaseDataFlag or it may need to release the inputs because the filter is an "in place" filter and it has overwritten its input with its output data. The implementation here simply checks the ReleaseDataFlag of the inputs. InPlaceImageFilter overrides this method so release the input it has overwritten.

See also:
InPlaceImageFilter::ReleaseInputs()

Reimplemented in itk::InPlaceImageFilter< TInputImage, TOutputImage >, itk::InPlaceImageFilter< TDeformationField, TDeformationField >, itk::InPlaceImageFilter< TLabelImage, TOutputImage >, itk::InPlaceImageFilter< TInputImage >, itk::InPlaceImageFilter< TInputImage, TSparseOutputImage >, itk::InPlaceImageFilter< TFeatureImageType, Superclass::ImageType >, itk::InPlaceImageFilter< TInputImage1, TOutputImage >, itk::InPlaceImageFilter< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::InPlaceImageFilter< TInputImage1, itk::Functor::MakeJoin< TInputImage1, TInputImage2 >::ImageType >, itk::InPlaceImageFilter< TInputImageType, TSparseOutputImageType >, and itk::InPlaceImageFilter< TImage, TImage >.

void itk::Object::RemoveAllObservers (  )  [inherited]

Remove all observers .

virtual void itk::ProcessObject::RemoveInput ( DataObject *  input  )  [protected, virtual, inherited]

void itk::Object::RemoveObserver ( unsigned long  tag  )  [inherited]

Remove the observer with this tag value.

virtual void itk::ProcessObject::RemoveOutput ( DataObject *  output  )  [protected, virtual, inherited]

virtual void itk::ProcessObject::ResetPipeline (  )  [virtual, inherited]

Reset the pipeline. If an exception is thrown during an Update(), the pipeline may be in an inconsistent state. This method clears the internal state of the pipeline so Update() can be called.

virtual void itk::ProcessObject::RestoreInputReleaseDataFlags (  )  [protected, virtual, inherited]

Restore the cached input ReleaseDataFlags.

virtual void itk::ProcessObject::SetAbortGenerateData ( bool  _arg  )  [virtual, inherited]

Set the AbortGenerateData flag for the process object. Process objects may handle premature termination of execution in different ways.

template<class TInputMesh, class TOutputMesh>
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::SetAlpha ( double  _arg  )  [virtual]

Set scalar factor for internal force

template<class TInputMesh, class TOutputMesh>
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::SetBeta ( double  _arg  )  [virtual]

Set external force scaling factor

template<class TInputMesh, class TOutputMesh>
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::SetDamping ( double  _arg  )  [virtual]

Set reference metrics update scaling factor

template<class TInputMesh, class TOutputMesh>
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::SetData ( GeometryMapType *  _arg  )  [virtual]

void itk::Object::SetDebug ( bool  debugFlag  )  const [inherited]

Set the value of the debug flag. A non-zero value turns debugging on.

template<class TInputMesh, class TOutputMesh>
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::SetGamma ( double  _arg  )  [virtual]

Set reference metrics update scaling factor

static void itk::Object::SetGlobalWarningDisplay ( bool  flag  )  [static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

template<class TInputMesh, class TOutputMesh>
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::SetGradient ( GradientImagePointer  _arg  )  [virtual]

Setter for gradient image

template<class TInputMesh, class TOutputMesh>
void itk::MeshToMeshFilter< TInputMesh, TOutputMesh >::SetInput ( InputMeshType *  input  )  [inherited]

Set the mesh input of this process object.

template<class TInputMesh, class TOutputMesh>
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::SetIterations ( int  _arg  )  [virtual]

Set number of iterations for deformation process

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary &  rhs  )  [inherited]

Returns:
Set the MetaDataDictionary

virtual void itk::ProcessObject::SetNthInput ( unsigned int  num,
DataObject *  input 
) [protected, virtual, inherited]

Protected methods for setting inputs. Subclasses make use of them for setting input.

Referenced by itk::watershed::BoundaryResolver< TPixelType, TDimension >::SetBoundaryA(), itk::watershed::BoundaryResolver< TPixelType, TDimension >::SetBoundaryB(), itk::watershed::EquivalenceRelabeler< TScalarType, TImageDimension >::SetEquivalencyTable(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetFeatureImage(), itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetFeatureImage(), itk::WatershedImageFilter< TInputImage >::SetInput(), itk::watershed::SegmentTreeGenerator< InputImageType::PixelType >::SetInputEquivalencyTable(), itk::watershed::Segmenter< TInputImage >::SetInputImage(), itk::watershed::Relabeler< InputImageType::PixelType, itkGetStaticConstMacro(ImageDimension)>::SetInputImage(), itk::watershed::EquivalenceRelabeler< TScalarType, TImageDimension >::SetInputImage(), itk::watershed::SegmentTreeGenerator< InputImageType::PixelType >::SetInputSegmentTable(), itk::watershed::Relabeler< InputImageType::PixelType, itkGetStaticConstMacro(ImageDimension)>::SetInputSegmentTree(), itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::SetReferenceImage(), itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType >::SetReferenceImage(), and itk::ChangeInformationImageFilter< TInputImage >::SetReferenceImage().

virtual void itk::ProcessObject::SetNthOutput ( unsigned int  num,
DataObject *  output 
) [protected, virtual, inherited]

Protected methods for setting outputs. Subclasses make use of them for getting output.

Referenced by itk::watershed::BoundaryResolver< TPixelType, TDimension >::BoundaryResolver(), itk::watershed::EquivalenceRelabeler< TScalarType, TImageDimension >::EquivalenceRelabeler(), itk::watershed::Segmenter< TInputImage >::SetBoundary(), itk::watershed::BoundaryResolver< TPixelType, TDimension >::SetEquivalencyTable(), itk::watershed::Segmenter< TInputImage >::SetOutputImage(), itk::watershed::Relabeler< InputImageType::PixelType, itkGetStaticConstMacro(ImageDimension)>::SetOutputImage(), itk::watershed::EquivalenceRelabeler< TScalarType, TImageDimension >::SetOutputImage(), and itk::watershed::Segmenter< TInputImage >::SetSegmentTable().

void itk::ProcessObject::SetNumberOfInputs ( unsigned int  num  )  [protected, inherited]

Called to allocate the input array. Copies old inputs.

void itk::ProcessObject::SetNumberOfOutputs ( unsigned int  num  )  [protected, inherited]

Called to allocate the output array. Copies old outputs.

virtual void itk::ProcessObject::SetNumberOfRequiredInputs ( unsigned int  _arg  )  [protected, virtual, inherited]

virtual void itk::ProcessObject::SetNumberOfRequiredOutputs ( unsigned int  _arg  )  [protected, virtual, inherited]

virtual void itk::ProcessObject::SetNumberOfThreads ( int  _arg  )  [virtual, inherited]

Get/Set the number of threads to create when executing.

template<class TOutputMesh>
void itk::MeshSource< TOutputMesh >::SetOutput ( TOutputMesh *  output  )  [inherited]

Set the mesh output of this process object. This call is slated to be removed from ITK. You should GraftOutput() and possible DataObject::DisconnectPipeline() to properly change the output.

virtual void itk::ProcessObject::SetProgress ( float  _arg  )  [virtual, inherited]

Set the execution progress of a process object. The progress is a floating number in [0,1] with 0 meaning no progress and 1 meaning the filter has completed execution. The ProgressEvent is NOT invoked.

virtual void itk::Object::SetReferenceCount ( int   )  [virtual, inherited]

Sets the reference count (use with care)

Reimplemented from itk::LightObject.

virtual void itk::ProcessObject::SetReleaseDataBeforeUpdateFlag ( bool  _arg  )  [virtual, inherited]

Turn on/off the flags to control whether the bulk data belonging to the outputs of this ProcessObject are released/reallocated during an Update(). In limited memory scenarios, a user may want to force the elements of a pipeline to release any bulk data that is going to be regenerated anyway during an Update() in order to control peak memory allocation. Note that this flag is different from the ReleaseDataFlag. ReleaseDataFlag manages the deallocation of a ProcessObject's bulk output data once that data has been consumed by a downstream ProcessObject. The ReleaseDataBeforeUpdateFlag manages the deallocation/reallocation of bulk data during a pipeline update to control peak memory utilization. Default value is on.

virtual void itk::ProcessObject::SetReleaseDataFlag ( bool  flag  )  [virtual, inherited]

Turn on/off the flags to control whether the bulk data belonging to the outputs of this ProcessObject are released after being used by a downstream ProcessObject. Default value is off. Another options for controlling memory utilization is the ReleaseDataBeforeUpdateFlag.

template<class TInputMesh, class TOutputMesh>
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::SetRigidity ( unsigned int  _arg  )  [virtual]

control smoothness of the mesh

virtual void itk::Object::UnRegister (  )  const [virtual, inherited]

Decrease the reference count (release by another object).

Reimplemented from itk::LightObject.

virtual void itk::ProcessObject::Update (  )  [virtual, inherited]

Bring this filter up-to-date. Update() checks modified times against last execution times, and re-executes objects if necessary. A side effect of this method is that the whole pipeline may execute in order to bring this filter up-to-date. This method updates the currently prescribed requested region. If no requested region has been set on the output, then the requested region will be set to the largest possible region. Once the requested region is set, Update() will make sure the specified requested region is up-to-date. This is a confusing side effect to users who are just calling Update() on a filter. A first call to Update() will cause the largest possible region to be updated. A second call to Update() will update that same region. If a modification to the upstream pipeline cause a filter to have a different largest possible region, this second call to Update() will not cause the output requested region to be reset to the new largest possible region. Instead, the output requested region will be the same as the last time Update() was called. To have a filter always to produce its largest possible region, users should call UpdateLargestPossibleRegion() instead.

Reimplemented in itk::CoreAtomImageToUnaryCorrespondenceMatrixProcess< TSourceImage >, itk::MedialNodePairCorrespondenceProcess< TSourceImage >, itk::MedialNodeTripletCorrespondenceProcess< TSourceImage >, itk::CoreAtomImageToDistanceMatrixProcess< TSourceImage >, itk::ImageFileWriter< TInputImage >, and itk::ImageSeriesWriter< TInputImage, TOutputImage >.

virtual void itk::ProcessObject::UpdateLargestPossibleRegion (  )  [virtual, inherited]

Like Update(), but sets the output requested region to the largest possible region for the output. This is the method users should call if they want the entire dataset to be processed. If a user wants to update the same output region as a previous call to Update() or a previous call to UpdateLargestPossibleRegion(), then they should call the method Update().

virtual void itk::ProcessObject::UpdateOutputData ( DataObject *  output  )  [virtual, inherited]

Actually generate new output

Reimplemented in itk::StreamingImageFilter< TInputImage, TOutputImage >.

virtual void itk::ProcessObject::UpdateOutputInformation (  )  [virtual, inherited]

Update the information decribing the output data. This method transverses up the pipeline gathering modified time information. On the way back down the pipeline, this method calls GenerateOutputInformation() to set any necessary information about the output data objects. For instance, a filter that shrinks an image will need to provide an implementation for GenerateOutputInformation() that changes the spacing of the pixels. Such filters should call their superclass' implementation of GenerateOutputInformation prior to changing the information values they need (i.e. GenerateOutputInformation() should call Superclass::GenerateOutputInformation() prior to changing the information.

Reimplemented in itk::watershed::Segmenter< TInputImage >, and itk::VTKImageImport< TOutputImage >.

void itk::ProcessObject::UpdateProgress ( float  amount  )  [inherited]

Update the progress of the process object.

Sets the Progress ivar to amount and invokes any observers for the ProgressEvent. The parameter amount should be in [0,1] and is the cumulative (not incremental) progress.

template<class TInputMesh, class TOutputMesh>
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::UpdateReferenceMetrics (  )  [protected, virtual]

Method updates the reference metrics for each mesh point

Member Data Documentation

template<class TInputMesh, class TOutputMesh>
double itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_Alpha [protected]

Scalar defining the influence of the internal forces Values should lie between 0.001 and 0.3. Higher values increase the stiffness of the mesh

Definition at line 284 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
double itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_Beta [protected]

Scalar defining the influence of the external force components The choice for this parameter strongly depends on the underlying data. Typical value range from 0.00001 to 0.3

Definition at line 292 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
double itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_Damping [protected]

Definition at line 301 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
GeometryMapPointer itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_Data [protected]

map stores a Geometry object for every mesh point

Definition at line 331 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
double itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_Gamma [protected]

Gamma influneces the distribution of the mesh points. It should lie between 0.01 and 0.2. Smaller values force the mesh to be more regular. When increasing gamma, mesh points will have higher density in places of high curvature.

Definition at line 300 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
GradientImagePointer itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_Gradient [protected]

Definition at line 334 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_ImageDepth [protected]

Image size

Definition at line 322 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_ImageHeight [protected]

Image size

Definition at line 319 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_ImageWidth [protected]

Image size

Definition at line 316 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_Iterations [protected]

This threshold decides when to stop the model.

Definition at line 325 of file itkDeformableSimplexMesh3DFilter.h.

TimeStamp itk::ProcessObject::m_OutputInformationMTime [protected, inherited]

Time when GenerateOutputInformation was last called.

Definition at line 431 of file itkProcessObject.h.

int itk::LightObject::m_ReferenceCount [mutable, protected, inherited]

Number of uses of this object by other objects.

Definition at line 119 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock [mutable, protected, inherited]

Mutex lock to protect modification to the reference count

Definition at line 122 of file itkLightObject.h.

template<class TInputMesh, class TOutputMesh>
unsigned int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_Rigidity [protected]

This scalar determines the smoothness of the surface model. Values should range from 0 to 10. It determines the radius of the neighborhood during internal force computation using the curvature shape contraint. The higher the rigidity the higher the smoothness.

Definition at line 309 of file itkDeformableSimplexMesh3DFilter.h.

template<class TInputMesh, class TOutputMesh>
int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_Step [protected]

Number of iterations

Definition at line 313 of file itkDeformableSimplexMesh3DFilter.h.

bool itk::ProcessObject::m_Updating [protected, inherited]

This flag indicates when the pipeline is executing. It prevents infinite recursion when pipelines have loops.

Definition at line 428 of file itkProcessObject.h.

The documentation for this class was generated from the following file:
Generated at Mon Mar 12 06:01:23 2007 for ITK by doxygen 1.5.1 written by Dimitri van Heesch, © 1997-2000