ITK
4.1.0
Insight Segmentation and Registration Toolkit
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#include <itkShapePriorSegmentationLevelSetImageFilter.h>
A base class which defines the API for implementing a level set segmentation filter with statistical shape influence.
TInputImage is the image type of the initial model you will input to the filter using SetInput() or SetInitialImage().
TFeatureImage is the image type of the image from which the filter will calculate the speed term for segmentation (see INPUTS).
TOutputPixelType is the data type used for the output image phi, the implicit level set image. This should really only ever be set as float (default) or double.
Definition at line 74 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef SmartPointer< const Self > itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ConstPointer |
Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Definition at line 89 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef CostFunctionType::Pointer itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::CostFunctionPointer |
Definition at line 112 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef ShapePriorMAPCostFunctionBase< TFeatureImage, TOutputPixelType > itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::CostFunctionType |
The type of the MAP estimate cost function.
Definition at line 111 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef Superclass::FeatureImageType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::FeatureImageType |
Local image typedefs
Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Definition at line 97 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef NodeContainerType::Pointer itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::NodeContainerPointer |
Definition at line 118 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef CostFunctionType::NodeContainerType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::NodeContainerType |
Definition at line 117 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef CostFunctionType::NodeType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::NodeType |
Type of node used to represent the active region around the zero set.
Definition at line 116 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef OptimizerType::Pointer itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::OptimizerPointer |
Definition at line 123 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef SingleValuedNonLinearOptimizer itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::OptimizerType |
The type of optimizer used to compute the MAP estimate of the shape and pose parameters.
Definition at line 122 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef Superclass::OutputImageType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::OutputImageType |
Output image type typedefs
Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Definition at line 96 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef TOutputPixelType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::OutputPixelType |
Type of the output pixel.
Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Definition at line 100 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef CostFunctionType::ParametersType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ParametersType |
Definition at line 113 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef SmartPointer< Self > itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::Pointer |
Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Definition at line 88 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef ShapePriorSegmentationLevelSetImageFilter itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::Self |
Standard class typedefs
Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Definition at line 85 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef ShapeFunctionType::Pointer itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ShapeFunctionPointer |
Definition at line 108 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef ShapePriorSegmentationFunctionType::ShapeFunctionType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ShapeFunctionType |
The shape signed distance function type.
Definition at line 107 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef ShapePriorSegmentationLevelSetFunction< OutputImageType, FeatureImageType > itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ShapePriorSegmentationFunctionType |
The level set function with shape prior type
Definition at line 104 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType > itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::Superclass |
Standard class typedefs
Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Definition at line 87 of file itkShapePriorSegmentationLevelSetImageFilter.h.
typedef Superclass::ValueType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ValueType |
Inherited typedef from the superclass.
Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Definition at line 92 of file itkShapePriorSegmentationLevelSetImageFilter.h.
virtual itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::~ShapePriorSegmentationLevelSetImageFilter | ( | ) | [inline, protected, virtual] |
Get the current parameters.
Definition at line 174 of file itkShapePriorSegmentationLevelSetImageFilter.h.
itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ShapePriorSegmentationLevelSetImageFilter | ( | ) | [protected] |
Get the current parameters.
itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ShapePriorSegmentationLevelSetImageFilter | ( | const Self & | ) | [private] |
void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ExtractActiveRegion | ( | NodeContainerType * | ptr | ) | [protected] |
Extract node of active region into a NodeContainer
void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GenerateData | ( | ) | [protected, virtual] |
Overridden from ProcessObject to set certain values before starting the finite difference solver and then create an appropriate output
Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
virtual CostFunctionType* itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetCostFunction | ( | ) | [virtual] |
Set/Get the shape prior MAP cost function.
virtual const ParametersType& itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetCurrentParameters | ( | ) | [virtual] |
Get the current parameters.
virtual ParametersType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetInitialParameters | ( | ) | const [virtual] |
Set/Get the initial parameters. These are the initial parameters applied to the ShapeFunction. The user should refer to the documentation of the particular type of ShapeSignedDistanceFunction used to determine the meaning of the parameters.
virtual const char* itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetNameOfClass | ( | ) | const [virtual] |
Run-time type information (and related methods).
Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
virtual OptimizerType* itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetOptimizer | ( | ) | [virtual] |
Set/Get the optimizer.
virtual ShapeFunctionType* itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetShapeFunction | ( | ) | [virtual] |
ValueType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetShapePriorScaling | ( | ) | const [inline] |
Definition at line 159 of file itkShapePriorSegmentationLevelSetImageFilter.h.
virtual ShapePriorSegmentationFunctionType* itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetShapePriorSegmentationFunction | ( | ) | [inline, virtual] |
Definition at line 168 of file itkShapePriorSegmentationLevelSetImageFilter.h.
virtual void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::InitializeIteration | ( | ) | [protected, virtual] |
Overrides parent implementation. MAP estimates of the shape and pose parameters is computed in this method.
Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::operator= | ( | const Self & | ) | [private] |
Flag to indicate whether Speed and Advection images are automatically generated when running the filter. Otherwise, a pointer to images must be explicitly set or GenerateSpeedImage() and/or GenerateAdvectionImage() called directly before updating the filter
Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
virtual void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::PrintSelf | ( | std::ostream & | os, |
Indent | indent | ||
) | const [protected, virtual] |
End concept checking
Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.
virtual void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetCostFunction | ( | CostFunctionType * | _arg | ) | [virtual] |
Set/Get the shape prior MAP cost function.
virtual void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetInitialParameters | ( | ParametersType | _arg | ) | [virtual] |
Set/Get the initial parameters. These are the initial parameters applied to the ShapeFunction. The user should refer to the documentation of the particular type of ShapeSignedDistanceFunction used to determine the meaning of the parameters.
virtual void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetOptimizer | ( | OptimizerType * | _arg | ) | [virtual] |
Set/Get the optimizer.
virtual void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetShapeFunction | ( | ShapeFunctionType * | s | ) | [virtual] |
Set/Get the shape signed distance function.
void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetShapePriorScaling | ( | ValueType | v | ) | [inline] |
Set/Get the scaling of the shape prior term.
Definition at line 149 of file itkShapePriorSegmentationLevelSetImageFilter.h.
virtual void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetShapePriorSegmentationFunction | ( | ShapePriorSegmentationFunctionType * | s | ) | [virtual] |
Set the shape prior segmentation function. In general, this should only be called by a subclass of this object. It is made public to allow itk::Command objects access.
const unsigned int itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ImageDimension = TInputImage::ImageDimension [static] |
Dimension of the input/level set image.
Reimplemented from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >.
Definition at line 82 of file itkShapePriorSegmentationLevelSetImageFilter.h.
CostFunctionPointer itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_CostFunction [private] |
Definition at line 199 of file itkShapePriorSegmentationLevelSetImageFilter.h.
ParametersType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_CurrentParameters [private] |
Definition at line 202 of file itkShapePriorSegmentationLevelSetImageFilter.h.
ParametersType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_InitialParameters [private] |
Definition at line 201 of file itkShapePriorSegmentationLevelSetImageFilter.h.
OptimizerPointer itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_Optimizer [private] |
Definition at line 200 of file itkShapePriorSegmentationLevelSetImageFilter.h.
ShapeFunctionPointer itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_ShapeFunction [private] |
Definition at line 198 of file itkShapePriorSegmentationLevelSetImageFilter.h.
ShapePriorSegmentationFunctionType* itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_ShapePriorSegmentationFunction [private] |
Definition at line 204 of file itkShapePriorSegmentationLevelSetImageFilter.h.