#include <itkJointDomainImageToListSampleAdaptor.h>

Inheritance diagram for itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >:

Collaboration diagram for itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >:

Classes
class	ConstIterator
	Const Iterator. More...
class	Iterator
	Iterator. More...
Public Types
typedef Superclass::AbsoluteFrequencyType	AbsoluteFrequencyType
typedef SmartPointer< const Self >	ConstPointer
typedef ImageJointDomainTraitsType::CoordinateRepType	CoordinateRepType
typedef ImageRegionConstIterator < ImageType >	ImageConstIteratorType
typedef ImageType::ConstPointer	ImageConstPointer
typedef ImageType::IndexType	ImageIndexType
typedef ImageRegionIterator < ImageType >	ImageIteratorType
typedef ImageJointDomainTraits < TImage >	ImageJointDomainTraitsType
typedef ImageType::Pointer	ImagePointer
typedef ImageType::RegionType	ImageRegionType
typedef ImageType::SizeType	ImageSizeType
typedef TImage	ImageType
typedef Superclass::InstanceIdentifier	InstanceIdentifier
typedef std::vector < InstanceIdentifier >	InstanceIdentifierVectorType
typedef ImageJointDomainTraitsType::MeasurementType	MeasurementType
typedef Superclass::MeasurementVectorSizeType	MeasurementVectorSizeType
typedef ImageJointDomainTraitsType::MeasurementVectorType	MeasurementVectorType
typedef FixedArray< float, itkGetStaticConstMacro(MeasurementVectorSize) >	NormalizationFactorsType
typedef ImageType::PixelContainerConstPointer	PixelContainerConstPointer
typedef ImageType::PixelType	PixelType
typedef SmartPointer< Self >	Pointer
typedef ImageJointDomainTraitsType::PointType	PointType
typedef ImageJointDomainTraitsType::RangeDomainMeasurementType	RangeDomainMeasurementType
typedef FixedArray < RangeDomainMeasurementType, itkGetStaticConstMacro(RangeDomainDimension) >	RangeDomainMeasurementVectorType
typedef JointDomainImageToListSampleAdaptor	Self
typedef ListSample< typename ImageJointDomainTraits< TImage > ::MeasurementVectorType >	Superclass
typedef Superclass::TotalAbsoluteFrequencyType	TotalAbsoluteFrequencyType
typedef MeasurementVectorType	ValueType
Public Member Functions
Iterator	Begin ()
ConstIterator	Begin () const
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
Iterator	End ()
ConstIterator	End () const
AbsoluteFrequencyType	GetFrequency (InstanceIdentifier id) const
const TImage *	GetImage () const
const MeasurementVectorType &	GetMeasurementVector (InstanceIdentifier id) const
virtual const char *	GetNameOfClass () const
TotalAbsoluteFrequencyType	GetTotalFrequency () const
void	SetImage (const TImage *image)
void	SetNormalizationFactors (NormalizationFactorsType &factors)
InstanceIdentifier	Size () const

virtual void	SetUsePixelContainer (bool _arg)
virtual bool	GetUsePixelContainer () const
virtual void	UsePixelContainerOn ()
virtual void	UsePixelContainerOff ()
Static Public Member Functions
static Pointer	New ()
Static Public Attributes
static const unsigned int	MeasurementVectorSize = ImageJointDomainTraitsType::Dimension
static const unsigned int	RangeDomainDimension = itk::PixelTraits< typename TImage::PixelType >::Dimension
Protected Member Functions
	JointDomainImageToListSampleAdaptor ()
void	PrintSelf (std::ostream &os, Indent indent) const
virtual	~JointDomainImageToListSampleAdaptor ()
Private Member Functions
	JointDomainImageToListSampleAdaptor (const Self &)
void	operator= (const Self &)
Private Attributes
ImageConstPointer	m_Image
NormalizationFactorsType	m_NormalizationFactors
PixelContainerConstPointer	m_PixelContainer
ImageIndexType	m_TempIndex
PointType	m_TempPoint
RangeDomainMeasurementVectorType	m_TempRangeVector
MeasurementVectorType	m_TempVector
bool	m_UsePixelContainer

Detailed Description

template<class TImage>
class itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >

This adaptor returns measurement vectors composed of an image pixel's range domain value (pixel value) and spatial domain value (pixel's physical coordiantes).

This class is a derived class of the ListSample class. This class overrides the GetMeasurementVector method. The GetMeasurementVector returns a measurement vector that consist of a pixel's physical coordinates and intensity value. For example, if the image dimension is 3, and the pixel value is two component vector, the measurement vector is a 5 component vector. The first three component will be x, y, z physical coordinates (not index) and the rest two component is the pixel values. The type of component is float or which is determined by the ImageJointDomainTraits class. When the pixel value type is double, the component value type of a measurement vector is double. In other case, the component value type is float becase the physical coordinate value type is float. Since the measurment vector is a composition of spatial domain and range domain, for many statistical analysis, we want to normalize the values from both domains. For this purpose, there is the SetNormalizationFactors method. With the above example (5 component measurement vector), you can specify a 5 component normalization factor array. With such factors, the GetMeasurementVector method returns a measurement vector whose each component is divided by the corresponding component of the factor array.

See also:: Sample, ListSample, ImageToListSampleAdaptor

Definition at line 91 of file itkJointDomainImageToListSampleAdaptor.h.

Member Typedef Documentation

template<class TImage >

typedef Superclass::AbsoluteFrequencyType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::AbsoluteFrequencyType

typedefs for Measurement vector, measurement, Instance Identifier, frequency, size, size element value

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

Definition at line 127 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef SmartPointer< const Self > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ConstPointer

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

Definition at line 103 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef ImageJointDomainTraitsType::CoordinateRepType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::CoordinateRepType

Definition at line 111 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef ImageRegionConstIterator< ImageType > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImageConstIteratorType

Definition at line 134 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef ImageType::ConstPointer itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImageConstPointer

Definition at line 137 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef ImageType::IndexType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImageIndexType

Definition at line 140 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef ImageRegionIterator< ImageType > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImageIteratorType

Definition at line 133 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef ImageJointDomainTraits< TImage > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImageJointDomainTraitsType

Definition at line 105 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef ImageType::Pointer itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImagePointer

Definition at line 136 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef ImageType::RegionType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImageRegionType

Definition at line 142 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef ImageType::SizeType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImageSizeType

Definition at line 141 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef TImage itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ImageType

Image typedefs

Definition at line 132 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef Superclass::InstanceIdentifier itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::InstanceIdentifier

InstanceIdentifier typedef. This identifier is a unique sequential id for each measurement vector in a Sample subclass.

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

Definition at line 129 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef std::vector< InstanceIdentifier > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::InstanceIdentifierVectorType

Definition at line 166 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef ImageJointDomainTraitsType::MeasurementType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::MeasurementType

ValueType of a measurement (ValueType of a component of the MeasurementVector

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

Definition at line 108 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef Superclass::MeasurementVectorSizeType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::MeasurementVectorSizeType

Typedef for the length of each measurement vector

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

Definition at line 123 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef ImageJointDomainTraitsType::MeasurementVectorType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::MeasurementVectorType

Typedefs inherited from the superclass

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

Definition at line 107 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef FixedArray< float, itkGetStaticConstMacro(MeasurementVectorSize) > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::NormalizationFactorsType

Definition at line 167 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef ImageType::PixelContainerConstPointer itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::PixelContainerConstPointer

Definition at line 139 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef ImageType::PixelType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::PixelType

Definition at line 138 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef SmartPointer< Self > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::Pointer

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

Definition at line 102 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef ImageJointDomainTraitsType::PointType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::PointType

Definition at line 110 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef ImageJointDomainTraitsType::RangeDomainMeasurementType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::RangeDomainMeasurementType

Definition at line 109 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef FixedArray< RangeDomainMeasurementType, itkGetStaticConstMacro(RangeDomainDimension) > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::RangeDomainMeasurementVectorType

Definition at line 164 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef JointDomainImageToListSampleAdaptor itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::Self

Standard class typedefs

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

Definition at line 97 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef ListSample< typename ImageJointDomainTraits< TImage >::MeasurementVectorType > itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::Superclass

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

Definition at line 100 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef Superclass::TotalAbsoluteFrequencyType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::TotalAbsoluteFrequencyType

Total frequency type

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

Definition at line 128 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

typedef MeasurementVectorType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ValueType

Value type of a measurement (component of the measurement vector)

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

Definition at line 143 of file itkJointDomainImageToListSampleAdaptor.h.

Constructor & Destructor Documentation

template<class TImage >

itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::JointDomainImageToListSampleAdaptor ( ) [protected]

template<class TImage >

virtual itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::~JointDomainImageToListSampleAdaptor ( ) [inline, protected, virtual]

Definition at line 331 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::JointDomainImageToListSampleAdaptor ( const Self & ) [private]

Member Function Documentation

template<class TImage >

Iterator itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::Begin ( void ) [inline]

returns an iterator that points to the beginning of the container

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

Definition at line 298 of file itkJointDomainImageToListSampleAdaptor.h.

Referenced by itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::ConstIterator::ConstIterator().

template<class TImage >

ConstIterator itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::Begin ( void ) const [inline]

returns an iterator that points to the beginning of the container

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

Definition at line 314 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

virtual::itk::LightObject::Pointer itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::CreateAnother ( void ) const [virtual]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

template<class TImage >

Iterator itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::End ( void ) [inline]

returns an iterator that points to the end of the container

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

Definition at line 306 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

ConstIterator itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::End ( void ) const [inline]

returns an iterator that points to the end of the container

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

Definition at line 322 of file itkJointDomainImageToListSampleAdaptor.h.

template<class TImage >

AbsoluteFrequencyType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::GetFrequency ( InstanceIdentifier id ) const

Get frequency

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

template<class TImage >

const TImage* itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::GetImage ( ) const

Method to get the image

template<class TImage >

const MeasurementVectorType& itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::GetMeasurementVector ( InstanceIdentifier id ) const

Gets the measurement vector specified by the instance identifier. This method overrides superclass method.

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

template<class TImage >

virtual const char* itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::GetNameOfClass ( ) const [virtual]

Run-time type information (and related methods).

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

template<class TImage >

TotalAbsoluteFrequencyType itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::GetTotalFrequency ( ) const [virtual]

Get total frequency

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

template<class TImage >

virtual bool itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::GetUsePixelContainer ( ) const [virtual]

Method to set UsePixelContainer flag

template<class TImage >

static Pointer itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::New ( ) [static]

Method for creation through the object factory.

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

template<class TImage >

void itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::operator= ( const Self & ) [private]

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

template<class TImage >

void itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const `[protected, virtual]`

Method for grafting the content of one data object into another one. This method is intended to be overloaded by derived classes. Each one of them should use dynamic_casting in order to verify that the grafted object is actually of the same type as the class on which the Graft() method was invoked.

Reimplemented from itk::Statistics::ListSample< ImageJointDomainTraits< TImage >::MeasurementVectorType >.

template<class TImage >

void itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::SetImage ( const TImage * image )

Method to set the image

template<class TImage >

void itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::SetNormalizationFactors ( NormalizationFactorsType & factors )

Sets the normalization factors

template<class TImage >

virtual void itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::SetUsePixelContainer ( bool _arg ) [virtual]

Method to set UsePixelContainer flag

template<class TImage >

InstanceIdentifier itk::Statistics::JointDomainImageToListSampleAdaptor< TImage >::Size ( ) const [virtual]