ITK  4.13.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Protected Types | Protected Member Functions | Private Attributes | List of all members
itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage > Class Template Reference

#include <itkKappaSigmaThresholdImageFilter.h>

+ Inheritance diagram for itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >:
+ Collaboration diagram for itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >:

Detailed Description

template<typename TInputImage, typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
class itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >

Threshold an image using Kappa-Sigma-Clipping.

This filter creates a binary thresholded image which separates background and foreground modes by iteratively rejecting pixels that do not belong to the dominant mode. The filter computes the threshold using the KappaSigmaThre- sholdImageCalculator and applies that threshold to the input image using the BinaryThresholdImageFilter.

Author
Gaetan Lehmann
Note
This class was taken from the Insight Journal paper: https://hdl.handle.net/1926/367
See Also
KappaSigmaThresholdImageCalculator

Definition at line 48 of file itkKappaSigmaThresholdImageFilter.h.

Public Types

typedef SmartPointer< const SelfConstPointer
 
typedef TInputImage::Pointer InputImagePointer
 
typedef TInputImage InputImageType
 
typedef TInputImage::PixelType InputPixelType
 
typedef TMaskImage::Pointer MaskImagePointer
 
typedef TMaskImage MaskImageType
 
typedef TMaskImage::PixelType MaskPixelType
 
typedef TOutputImage::Pointer OutputImagePointer
 
typedef TOutputImage::PixelType OutputPixelType
 
typedef SmartPointer< SelfPointer
 
typedef
KappaSigmaThresholdImageFilter 
Self
 
typedef ImageToImageFilter
< TInputImage, TOutputImage > 
Superclass
 
- Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
InputImageType::ConstPointer 
InputImageConstPointer
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef TInputImage InputImageType
 
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
 
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
 
typedef SmartPointer< SelfPointer
 
typedef ImageToImageFilter Self
 
typedef ImageSource< TOutputImage > Superclass
 
- Public Types inherited from itk::ImageSource< TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef
Superclass::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef TOutputImage OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef ImageSource Self
 
typedef ProcessObject Superclass
 
- Public Types inherited from itk::ProcessObject
typedef SmartPointer< const SelfConstPointer
 
typedef
DataObject::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
 
typedef
DataObjectPointerArray::size_type 
DataObjectPointerArraySizeType
 
typedef MultiThreader MultiThreaderType
 
typedef std::vector
< DataObjectIdentifierType
NameArray
 
typedef SmartPointer< SelfPointer
 
typedef ProcessObject Self
 
typedef Object Superclass
 
- Public Types inherited from itk::Object
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightObject Self
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother () const
 
virtual OutputPixelType GetInsideValue () const
 
const MaskImageTypeGetMaskImage () const
 
virtual const char * GetNameOfClass () const
 
virtual OutputPixelType GetOutsideValue () const
 
virtual InputPixelType GetThreshold () const
 
void SetInput1 (const TInputImage *input)
 
void SetInput2 (const MaskImageType *input)
 
virtual void SetInsideValue (OutputPixelType _arg)
 
void SetMaskImage (const MaskImageType *input)
 
virtual void SetOutsideValue (OutputPixelType _arg)
 
virtual void SetMaskValue (MaskPixelType _arg)
 
virtual MaskPixelType GetMaskValue () const
 
virtual void SetSigmaFactor (double _arg)
 
virtual double GetSigmaFactor () const
 
virtual void SetNumberOfIterations (unsigned int _arg)
 
virtual unsigned int GetNumberOfIterations () const
 
- Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageTypeGetInput () const
 
const InputImageTypeGetInput (unsigned int idx) const
 
virtual void PopBackInput () override
 
virtual void PopFrontInput () override
 
virtual void PushBackInput (const InputImageType *image)
 
virtual void PushFrontInput (const InputImageType *image)
 
virtual void SetInput (const InputImageType *image)
 
virtual void SetInput (unsigned int, const TInputImage *image)
 
virtual void SetCoordinateTolerance (double _arg)
 
virtual double GetCoordinateTolerance () const
 
virtual void SetDirectionTolerance (double _arg)
 
virtual double GetDirectionTolerance () const
 
- Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageTypeGetOutput (unsigned int idx)
 
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
 
OutputImageTypeGetOutput ()
 
const OutputImageTypeGetOutput () const
 
virtual void GraftOutput (DataObject *output)
 
virtual
ProcessObject::DataObjectPointer 
MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override
 
virtual
ProcessObject::DataObjectPointer 
MakeOutput (const ProcessObject::DataObjectIdentifierType &) override
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData () const
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
NameArray GetInputNames () const
 
DataObjectPointerArray GetInputs ()
 
MultiThreaderTypeGetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
DataObjectPointerArray GetOutputs ()
 
virtual const float & GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
void SetProgress (float progress)
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfThreads (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfThreads () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary ()
 
const MetaDataDictionaryGetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int) override
 
virtual void UnRegister () const noexceptoverride
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Protected Types

typedef
KappaSigmaThresholdImageCalculator
< TInputImage, TMaskImage > 
CalculatorType
 
typedef TInputImage::RegionType InputImageRegionType
 
typedef TInputImage::IndexType InputIndexType
 
typedef TInputImage::SizeType InputSizeType
 
typedef TOutputImage::RegionType OutputImageRegionType
 
typedef TOutputImage::IndexType OutputIndexType
 
typedef TOutputImage::SizeType OutputSizeType
 
- Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(OutputImageDimension),
itkGetStaticConstMacro(InputImageDimension) > 
InputToOutputRegionCopierType
 
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(InputImageDimension),
itkGetStaticConstMacro(OutputImageDimension) > 
OutputToInputRegionCopierType
 

Protected Member Functions

virtual void GenerateData () override
 
virtual void GenerateInputRequestedRegion () override
 
 KappaSigmaThresholdImageFilter ()
 
virtual void PrintSelf (std::ostream &os, Indent indent) const override
 
 ~KappaSigmaThresholdImageFilter () override
 
- Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
 
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 
 ImageToImageFilter ()
 
virtual void VerifyInputInformation () override
 
 ~ImageToImageFilter () override
 
void PushBackInput (const DataObject *input) override
 
void PushFrontInput (const DataObject *input) override
 
- Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void AfterThreadedGenerateData ()
 
virtual void AllocateOutputs ()
 
virtual void BeforeThreadedGenerateData ()
 
virtual const
ImageRegionSplitterBase
GetImageRegionSplitter () const
 
 ImageSource ()
 
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
 
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
 
virtual ~ImageSource () override
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
void AddOptionalInputName (const DataObjectIdentifierType &)
 
void AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void AddOutput (DataObject *output)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateOutputInformation ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs () const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs () const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
 
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
void SetRequiredInputNames (const NameArray &)
 
virtual void VerifyPreconditions ()
 
 ~ProcessObject () override
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName (void) const
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName (void) const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object () override
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Static Protected Attributes

static const unsigned int InputImageDimension = TInputImage::ImageDimension
 
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 

Private Attributes

OutputPixelType m_InsideValue
 
MaskPixelType m_MaskValue
 
unsigned int m_NumberOfIterations
 
OutputPixelType m_OutsideValue
 
double m_SigmaFactor
 
InputPixelType m_Threshold
 

Additional Inherited Members

- Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int InputImageDimension = TInputImage::ImageDimension
 
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 
- Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 
- Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const
ImageRegionSplitterBase
GetGlobalDefaultSplitter ()
 
static ITK_THREAD_RETURN_TYPE ThreaderCallback (void *arg)
 
- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 
- Protected Attributes inherited from itk::LightObject
AtomicInt< int > m_ReferenceCount
 

Member Typedef Documentation

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef KappaSigmaThresholdImageCalculator< TInputImage, TMaskImage > itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::CalculatorType
protected

Definition at line 161 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef SmartPointer< const Self > itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::ConstPointer

Definition at line 56 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef TInputImage::Pointer itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::InputImagePointer

Image related typedefs.

Definition at line 74 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef TInputImage::RegionType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::InputImageRegionType
protected

Definition at line 156 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef TInputImage itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::InputImageType

Standard image type within this class.

Definition at line 62 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef TInputImage::IndexType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::InputIndexType
protected

Definition at line 155 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef TInputImage::PixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::InputPixelType

Image pixel value typedef.

Definition at line 69 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef TInputImage::SizeType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::InputSizeType
protected

Definition at line 154 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef TMaskImage::Pointer itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::MaskImagePointer

Definition at line 76 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef TMaskImage itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::MaskImageType

Definition at line 66 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef TMaskImage::PixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::MaskPixelType

Definition at line 71 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef TOutputImage::Pointer itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::OutputImagePointer

Definition at line 75 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef TOutputImage::RegionType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::OutputImageRegionType
protected

Definition at line 159 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef TOutputImage::IndexType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::OutputIndexType
protected

Definition at line 158 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef TOutputImage::PixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::OutputPixelType

Definition at line 70 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef TOutputImage::SizeType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::OutputSizeType
protected

Definition at line 157 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef SmartPointer< Self > itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::Pointer

Definition at line 55 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef KappaSigmaThresholdImageFilter itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::Self

Standard Self typedef

Definition at line 53 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
typedef ImageToImageFilter< TInputImage, TOutputImage > itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::Superclass

Definition at line 54 of file itkKappaSigmaThresholdImageFilter.h.

Constructor & Destructor Documentation

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::KappaSigmaThresholdImageFilter ( )
protected
template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::~KappaSigmaThresholdImageFilter ( )
inlineoverrideprotected

Definition at line 147 of file itkKappaSigmaThresholdImageFilter.h.

Member Function Documentation

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
virtual::itk::LightObject::Pointer itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::CreateAnother ( ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
virtual void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GenerateData ( )
overrideprotectedvirtual

A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.

See Also
ThreadedGenerateData()

Reimplemented from itk::ImageSource< TOutputImage >.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
virtual void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GenerateInputRequestedRegion ( )
overrideprotectedvirtual

What is the input requested region that is required to produce the output requested region? The base assumption for image processing filters is that the input requested region can be set to match the output requested region. If a filter requires more input (for instance a filter that uses neighborhoods needs more input than output to avoid introducing artificial boundary conditions) or less input (for instance a magnify filter) will have to override this method. In doing so, it should call its superclass' implementation as its first step. Note that imaging filters operate differently than the classes to this point in the class hierarchy. Up till now, the base assumption has been that the largest possible region will be requested of the input.

This implementation of GenerateInputRequestedRegion() only processes the inputs that are a subclass of the ImageBase<InputImageDimension>. If an input is another type of DataObject (including an Image of a different dimension), they are skipped by this method. The subclasses of ImageToImageFilter are responsible for providing an implementation of GenerateInputRequestedRegion() when there are multiple inputs of different types.

See Also
ProcessObject::GenerateInputRequestedRegion(), ImageSource::GenerateInputRequestedRegion()

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
virtual OutputPixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GetInsideValue ( ) const
virtual

Get the "inside" pixel value.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
const MaskImageType* itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GetMaskImage ( ) const
inline

Get the mask image

Definition at line 128 of file itkKappaSigmaThresholdImageFilter.h.

References itk::ProcessObject::GetInput().

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
virtual MaskPixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GetMaskValue ( ) const
virtual

Set the mask value used to select which pixels will be considered in the threshold computation (optional, only in case a MaskImage is set).

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
virtual const char* itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GetNameOfClass ( ) const
virtual

Runtime information support.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
virtual unsigned int itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GetNumberOfIterations ( ) const
virtual

Set the number of rejection passes.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
virtual OutputPixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GetOutsideValue ( ) const
virtual

Get the "outside" pixel value.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
virtual double itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GetSigmaFactor ( ) const
virtual

Set the Sigma multiplier (Kappa) to adjust the pixel rejection rate.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
virtual InputPixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GetThreshold ( ) const
virtual

Get the computed threshold.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
static Pointer itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::New ( )
static

Method for creation through the object factory.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
virtual void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::SetInput1 ( const TInputImage *  input)
inline

Set the input image

Definition at line 134 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::SetInput2 ( const MaskImageType input)
inline

Set the marker image

Definition at line 140 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
virtual void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::SetInsideValue ( OutputPixelType  _arg)
virtual

Set the "inside" pixel value. The default value NumericTraits<OutputPixelType>::max()

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::SetMaskImage ( const MaskImageType input)
inline

Set the mask image

Definition at line 121 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
virtual void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::SetMaskValue ( MaskPixelType  _arg)
virtual

Set the mask value used to select which pixels will be considered in the threshold computation (optional, only in case a MaskImage is set).

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
virtual void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::SetNumberOfIterations ( unsigned int  _arg)
virtual

Set the number of rejection passes.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
virtual void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::SetOutsideValue ( OutputPixelType  _arg)
virtual

Set the "outside" pixel value. The default value NumericTraits<OutputPixelType>::ZeroValue().

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
virtual void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::SetSigmaFactor ( double  _arg)
virtual

Set the Sigma multiplier (Kappa) to adjust the pixel rejection rate.

Member Data Documentation

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
const unsigned int itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::InputImageDimension = TInputImage::ImageDimension
staticprotected

Image related typedefs.

Definition at line 165 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
OutputPixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::m_InsideValue
private

Definition at line 177 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
MaskPixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::m_MaskValue
private

Definition at line 171 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
unsigned int itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::m_NumberOfIterations
private

Definition at line 175 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
OutputPixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::m_OutsideValue
private

Definition at line 178 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
double itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::m_SigmaFactor
private

Definition at line 174 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
InputPixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::m_Threshold
private

Definition at line 176 of file itkKappaSigmaThresholdImageFilter.h.

template<typename TInputImage , typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >, class TOutputImage = TInputImage>
const unsigned int itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::OutputImageDimension = TOutputImage::ImageDimension
staticprotected

Image related typedefs.

Definition at line 167 of file itkKappaSigmaThresholdImageFilter.h.


The documentation for this class was generated from the following file: