itkKappaSigmaThresholdImageFilter.h

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/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkKappaSigmaThresholdImageFilter_h
#define itkKappaSigmaThresholdImageFilter_h

#include "itkImageToImageFilter.h"
#include "itkKappaSigmaThresholdImageCalculator.h"

namespace itk
{
template< typename TInputImage,
          typename TMaskImage = Image< unsigned char, TInputImage::ImageDimension >,
          class TOutputImage = TInputImage >
class ITK_TEMPLATE_EXPORT KappaSigmaThresholdImageFilter:
  public ImageToImageFilter< TInputImage, TOutputImage >
{
public:
  typedef KappaSigmaThresholdImageFilter                  Self;
  typedef ImageToImageFilter< TInputImage, TOutputImage > Superclass;
  typedef SmartPointer< Self >                            Pointer;
  typedef SmartPointer< const Self >                      ConstPointer;

  itkNewMacro(Self);

  itkTypeMacro(KappaSigmaThresholdImageFilter, ImageToImageFilter);

  typedef TInputImage InputImageType;
  typedef TMaskImage  MaskImageType;

  typedef typename TInputImage::PixelType  InputPixelType;
  typedef typename TOutputImage::PixelType OutputPixelType;
  typedef typename TMaskImage::PixelType   MaskPixelType;

  typedef typename TInputImage::Pointer  InputImagePointer;
  typedef typename TOutputImage::Pointer OutputImagePointer;
  typedef typename TMaskImage::Pointer   MaskImagePointer;

  itkSetMacro(OutsideValue, OutputPixelType);

  itkGetConstMacro(OutsideValue, OutputPixelType);

  itkSetMacro(InsideValue, OutputPixelType);

  itkGetConstMacro(InsideValue, OutputPixelType);

  itkGetConstMacro(Threshold, InputPixelType);

  itkSetMacro(MaskValue, MaskPixelType);
  itkGetConstMacro(MaskValue, MaskPixelType);

  itkSetMacro(SigmaFactor, double);
  itkGetConstMacro(SigmaFactor, double);

  itkSetMacro(NumberOfIterations, unsigned int);
  itkGetConstMacro(NumberOfIterations, unsigned int);

#ifdef ITK_USE_CONCEPT_CHECKING
  // Begin concept checking
  itkConceptMacro( OutputComparableCheck,
                   ( Concept::Comparable< OutputPixelType > ) );
  itkConceptMacro( OutputOStreamWritableCheck,
                   ( Concept::OStreamWritable< OutputPixelType > ) );
  // End concept checking
#endif

  void SetMaskImage(const MaskImageType *input)
  {
    // Process object is not const-correct so the const casting is required.
    this->SetNthInput( 1, const_cast< MaskImageType * >( input ) );
  }

  const MaskImageType * GetMaskImage() const
  {
    return static_cast< MaskImageType * >( const_cast< DataObject * >( this->ProcessObject::GetInput(1) ) );
  }

  void SetInput1(const TInputImage *input)
  {
    this->SetInput(input);
  }

  void SetInput2(const MaskImageType *input)
  {
    this->SetMaskImage(input);
  }

protected:
  KappaSigmaThresholdImageFilter();
  ~KappaSigmaThresholdImageFilter() ITK_OVERRIDE {}
  virtual void PrintSelf(std::ostream & os, Indent indent) const ITK_OVERRIDE;

  virtual void GenerateInputRequestedRegion() ITK_OVERRIDE;

  virtual void GenerateData() ITK_OVERRIDE;

  typedef typename TInputImage::SizeType    InputSizeType;
  typedef typename TInputImage::IndexType   InputIndexType;
  typedef typename TInputImage::RegionType  InputImageRegionType;
  typedef typename TOutputImage::SizeType   OutputSizeType;
  typedef typename TOutputImage::IndexType  OutputIndexType;
  typedef typename TOutputImage::RegionType OutputImageRegionType;

  typedef KappaSigmaThresholdImageCalculator< TInputImage, TMaskImage > CalculatorType;

  itkStaticConstMacro(InputImageDimension, unsigned int,
                      TInputImage::ImageDimension);
  itkStaticConstMacro(OutputImageDimension, unsigned int,
                      TOutputImage::ImageDimension);

private:
  ITK_DISALLOW_COPY_AND_ASSIGN(KappaSigmaThresholdImageFilter);

  MaskPixelType   m_MaskValue;
  double          m_SigmaFactor;
  unsigned int    m_NumberOfIterations;
  InputPixelType  m_Threshold;
  OutputPixelType m_InsideValue;
  OutputPixelType m_OutsideValue;
};
} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkKappaSigmaThresholdImageFilter.hxx"
#endif

#endif