template<typename TFixedImage, typename TMovingImage, typename TDisplacementField, typename TRealType = float>
class itk::MultiResolutionPDEDeformableRegistration< TFixedImage, TMovingImage, TDisplacementField, TRealType >
Framework for performing multi-resolution PDE deformable registration.
MultiResolutionPDEDeformableRegistration provides a generic framework to peform multi-resolution deformable registration.
At each resolution level a PDEDeformableRegistrationFilter is used to register two images by computing the deformation field which will map a moving image onto a fixed image.
A deformation field is represented as an image whose pixel type is some vector type with at least N elements, where N is the dimension of the fixed image. The vector type must support element access via operator []. It is assumed that the vector elements behave like floating point scalars.
The internal PDEDeformationRegistrationFilter can be set using SetRegistrationFilter. By default a DemonsRegistrationFilter is used.
The input fixed and moving images are set via methods SetFixedImage and SetMovingImage respectively. An initial deformation field maybe set via SetInitialDisplacementField if is matches the characteristics of the coarsest pyramid level. If no such assumption can be made (e.g. the deformation field has the same characteristics as the input images), an initial deformation field can still be set via SetArbitraryInitialDisplacementField or SetInput. The filter will then take care of mathching the coarsest level characteristics. If no initial field is set a zero field is used as the initial condition.
MultiResolutionPyramidImageFilters are used to downsample the fixed and moving images. A VectorExpandImageFilter is used to upsample the deformation as we move from a coarse to fine solution.
This class is templated over the fixed image type, the moving image type, and the Deformation Field type.
- Warning
- This class assumes that the fixed, moving and deformation field image types all have the same number of dimensions.
- See Also
- PDEDeformableRegistrationFilter
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DemonsRegistrationFilter
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MultiResolutionPyramidImageFilter
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VectorExpandImageFilter
The current implementation of this class does not support streaming.
- Examples:
- Examples/RegistrationITKv3/DeformableRegistration10.cxx, Examples/RegistrationITKv3/DeformableRegistration16.cxx, Examples/RegistrationITKv3/DeformableRegistration17.cxx, Examples/RegistrationITKv4/DeformableRegistration10.cxx, Examples/RegistrationITKv4/DeformableRegistration16.cxx, and Examples/RegistrationITKv4/DeformableRegistration17.cxx.
Definition at line 81 of file itkMultiResolutionPDEDeformableRegistration.h.
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| virtual void | EnlargeOutputRequestedRegion (DataObject *ptr) override |
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| virtual void | GenerateData () override |
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| virtual void | GenerateInputRequestedRegion () override |
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| virtual void | GenerateOutputInformation () override |
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| virtual bool | Halt () |
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| | MultiResolutionPDEDeformableRegistration () |
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| void | PrintSelf (std::ostream &os, Indent indent) const override |
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| virtual void | VerifyInputInformation () override |
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| virtual void | CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion) |
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| virtual void | CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion) |
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| | ImageToImageFilter () |
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| | ~ImageToImageFilter () override |
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| void | PushBackInput (const DataObject *input) override |
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| void | PushFrontInput (const DataObject *input) override |
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| virtual void | AfterThreadedGenerateData () |
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| virtual void | AllocateOutputs () |
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| virtual void | BeforeThreadedGenerateData () |
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virtual const
ImageRegionSplitterBase * | GetImageRegionSplitter () const |
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| | ImageSource () |
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| virtual unsigned int | SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion) |
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| virtual void | ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId) |
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| virtual | ~ImageSource () override |
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| virtual void | AddInput (DataObject *input) |
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| void | AddOptionalInputName (const DataObjectIdentifierType &) |
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| void | AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
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| virtual void | AddOutput (DataObject *output) |
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| bool | AddRequiredInputName (const DataObjectIdentifierType &) |
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| bool | AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
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| virtual void | CacheInputReleaseDataFlags () |
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| virtual void | GenerateOutputRequestedRegion (DataObject *output) |
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| DataObject * | GetInput (const DataObjectIdentifierType &key) |
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| const DataObject * | GetInput (const DataObjectIdentifierType &key) const |
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virtual const
DataObjectPointerArraySizeType & | GetNumberOfRequiredInputs () const |
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virtual const
DataObjectPointerArraySizeType & | GetNumberOfRequiredOutputs () const |
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| bool | IsIndexedInputName (const DataObjectIdentifierType &) const |
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| bool | IsIndexedOutputName (const DataObjectIdentifierType &) const |
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| bool | IsRequiredInputName (const DataObjectIdentifierType &) const |
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| | itkLegacyMacro (virtual void RemoveOutput(DataObject *output)) |
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| | itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num)) |
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| | itkLegacyMacro (virtual void RemoveInput(DataObject *input)) |
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| | itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num)) |
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| DataObjectPointerArraySizeType | MakeIndexFromInputName (const DataObjectIdentifierType &name) const |
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| DataObjectPointerArraySizeType | MakeIndexFromOutputName (const DataObjectIdentifierType &name) const |
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| DataObjectIdentifierType | MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const |
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| DataObjectIdentifierType | MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const |
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| | ProcessObject () |
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| virtual void | PropagateResetPipeline () |
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| virtual void | ReleaseInputs () |
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| virtual void | RemoveInput (const DataObjectIdentifierType &key) |
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| virtual void | RemoveInput (DataObjectPointerArraySizeType) |
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| virtual void | RemoveOutput (const DataObjectIdentifierType &key) |
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| virtual void | RemoveOutput (DataObjectPointerArraySizeType idx) |
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| bool | RemoveRequiredInputName (const DataObjectIdentifierType &) |
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| virtual void | RestoreInputReleaseDataFlags () |
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| virtual void | SetInput (const DataObjectIdentifierType &key, DataObject *input) |
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| virtual void | SetNthInput (DataObjectPointerArraySizeType num, DataObject *input) |
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| virtual void | SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output) |
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| void | SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num) |
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| void | SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num) |
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| virtual void | SetNumberOfRequiredInputs (DataObjectPointerArraySizeType) |
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| virtual void | SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg) |
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| virtual void | SetOutput (const DataObjectIdentifierType &key, DataObject *output) |
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| virtual void | SetPrimaryInput (DataObject *input) |
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| virtual void | SetPrimaryOutput (DataObject *output) |
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| void | SetRequiredInputNames (const NameArray &) |
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| virtual void | VerifyPreconditions () |
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| | ~ProcessObject () override |
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| DataObject * | GetInput (DataObjectPointerArraySizeType idx) |
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| const DataObject * | GetInput (DataObjectPointerArraySizeType idx) const |
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| DataObject * | GetPrimaryInput () |
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| const DataObject * | GetPrimaryInput () const |
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| virtual void | SetPrimaryInputName (const DataObjectIdentifierType &key) |
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| virtual const char * | GetPrimaryInputName (void) const |
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| DataObject * | GetOutput (const DataObjectIdentifierType &key) |
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| const DataObject * | GetOutput (const DataObjectIdentifierType &key) const |
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| virtual void | SetPrimaryOutputName (const DataObjectIdentifierType &key) |
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| virtual const char * | GetPrimaryOutputName (void) const |
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| DataObject * | GetOutput (DataObjectPointerArraySizeType idx) |
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| const DataObject * | GetOutput (DataObjectPointerArraySizeType idx) const |
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| DataObject * | GetPrimaryOutput () |
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| const DataObject * | GetPrimaryOutput () const |
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| | Object () |
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| bool | PrintObservers (std::ostream &os, Indent indent) const |
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| virtual void | SetTimeStamp (const TimeStamp &time) |
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| virtual | ~Object () override |
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| virtual LightObject::Pointer | InternalClone () const |
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| | LightObject () |
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| virtual void | PrintHeader (std::ostream &os, Indent indent) const |
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| virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
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| virtual | ~LightObject () |
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template<typename TFixedImage , typename TMovingImage , typename TDisplacementField , typename TRealType = float>
By default, the output deformation field has the same spacing, origin and LargestPossibleRegion as the input/initial deformation field.
If the initial deformation field is not set, the output information is copied from the fixed image.
Reimplemented from itk::ProcessObject.
Inheritance diagram for itk::MultiResolutionPDEDeformableRegistration< TFixedImage, TMovingImage, TDisplacementField, TRealType >:
1.8.5
