ITK  4.2.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Member Functions | Private Attributes
itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType > Class Template Reference

#include <itkGeodesicActiveContourShapePriorLevelSetFunction.h>

+ Inheritance diagram for itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >:
+ Collaboration diagram for itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >:

List of all members.

Public Types

typedef SmartPointer< const SelfConstPointer
typedef TFeatureImageType FeatureImageType
typedef
Superclass::FeatureScalarType 
FeatureScalarType
typedef Superclass::FloatOffsetType FloatOffsetType
typedef
Superclass::GlobalDataStruct 
GlobalDataStruct
typedef Superclass::ImageType ImageType
typedef
Superclass::NeighborhoodType 
NeighborhoodType
typedef SmartPointer< SelfPointer
typedef Superclass::RadiusType RadiusType
typedef Superclass::ScalarValueType ScalarValueType
typedef
GeodesicActiveContourShapePriorLevelSetFunction 
Self
typedef
ShapePriorSegmentationLevelSetFunction
< TImageType,
TFeatureImageType > 
Superclass
typedef Superclass::VectorImageType VectorImageType
- Public Types inherited from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >
typedef
Superclass::ContinuousIndexType 
ContinuousIndexType
typedef Superclass::IndexType IndexType
typedef Superclass::PixelType PixelType
typedef
ShapeFunctionType::ConstPointer 
ShapeFunctionPointer
typedef
ShapeSignedDistanceFunction
< double,
itkGetStaticConstMacro(ImageDimension) > 
ShapeFunctionType
typedef Superclass::TimeStepType TimeStepType
- Public Types inherited from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >
typedef
LinearInterpolateImageFunction
< ImageType
InterpolatorType
typedef Superclass::PixelRealType PixelRealType
typedef
VectorLinearInterpolateImageFunction
< VectorImageType
VectorInterpolatorType
typedef Superclass::VectorType VectorType
- Public Types inherited from itk::LevelSetFunction< TImageType >
typedef
Superclass::NeighborhoodScalesType 
NeighborhoodScalesType
- Public Types inherited from itk::FiniteDifferenceFunction< TImageType >
typedef
ZeroFluxNeumannBoundaryCondition
< ImageType
DefaultBoundaryConditionType
- Public Types inherited from itk::LightObject

Public Member Functions

virtual void CalculateAdvectionImage ()
virtual void CalculateSpeedImage ()
virtual ::itk::LightObject::Pointer CreateAnother (void) const
virtual ScalarValueType CurvatureSpeed (const NeighborhoodType &neighborhood, const FloatOffsetType &offset, GlobalDataStruct *gd) const
virtual const char * GetNameOfClass () const
virtual void Initialize (const RadiusType &r)
void SetDerivativeSigma (const double v)
double GetDerivativeSigma ()
- Public Member Functions inherited from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >
virtual TimeStepType ComputeGlobalTimeStep (void *globalData) const
virtual PixelType ComputeUpdate (const NeighborhoodType &neighborhood, void *globalData, const FloatOffsetType &=FloatOffsetType(0.0))
virtual void * GetGlobalDataPointer () const
void SetShapePriorWeight (const ScalarValueType p)
ScalarValueType GetShapePriorWeight () const
void SetShapeFunction (const ShapeFunctionType *ptr)
const ShapeFunctionTypeGetShapeFunction () const
virtual void ReleaseGlobalDataPointer (void *GlobalData) const
- Public Member Functions inherited from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >
virtual void AllocateAdvectionImage ()
virtual void AllocateSpeedImage ()
virtual void ReverseExpansionDirection ()
virtual const FeatureImageTypeGetFeatureImage () const
virtual void SetFeatureImage (const FeatureImageType *f)
virtual ImageTypeGetSpeedImage ()
void SetSpeedImage (ImageType *s)
virtual VectorImageTypeGetAdvectionImage () const
void SetAdvectionImage (VectorImageType *s)
- Public Member Functions inherited from itk::LevelSetFunction< TImageType >
virtual ScalarValueType Compute3DMinimalCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)
virtual ScalarValueType ComputeCurvatureTerm (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)
virtual ScalarValueType ComputeMeanCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)
virtual ScalarValueType ComputeMinimalCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)
bool GetUseMinimalCurvature () const
virtual ScalarValueType LaplacianSmoothingSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=0) const
void SetUseMinimalCurvature (bool b)
void UseMinimalCurvatureOff ()
void UseMinimalCurvatureOn ()
virtual void SetAdvectionWeight (const ScalarValueType a)
ScalarValueType GetAdvectionWeight () const
virtual void SetPropagationWeight (const ScalarValueType p)
ScalarValueType GetPropagationWeight () const
virtual void SetCurvatureWeight (const ScalarValueType c)
ScalarValueType GetCurvatureWeight () const
void SetLaplacianSmoothingWeight (const ScalarValueType c)
ScalarValueType GetLaplacianSmoothingWeight () const
void SetEpsilonMagnitude (const ScalarValueType e)
ScalarValueType GetEpsilonMagnitude () const
- Public Member Functions inherited from itk::FiniteDifferenceFunction< TImageType >
const NeighborhoodScalesType ComputeNeighborhoodScales () const
const RadiusTypeGetRadius () const
virtual void InitializeIteration ()
void SetRadius (const RadiusType &r)
void SetScaleCoefficients (PixelRealType vals[ImageDimension])
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
virtual int GetReferenceCount () const
 itkCloneMacro (Self)
void Print (std::ostream &os, Indent indent=0) const
virtual void Register () const
virtual void SetReferenceCount (int)
virtual void UnRegister () const

Static Public Member Functions

static Pointer New ()

Static Public Attributes

static const unsigned int ImageDimension = Superclass::ImageDimension
- Static Public Attributes inherited from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >
- Static Public Attributes inherited from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >
- Static Public Attributes inherited from itk::LevelSetFunction< TImageType >
- Static Public Attributes inherited from itk::FiniteDifferenceFunction< TImageType >

Protected Member Functions

 GeodesicActiveContourShapePriorLevelSetFunction ()
 GeodesicActiveContourShapePriorLevelSetFunction (const Self &)
void operator= (const Self &)
void PrintSelf (std::ostream &os, Indent indent) const
virtual ~GeodesicActiveContourShapePriorLevelSetFunction ()
- Protected Member Functions inherited from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >
 ShapePriorSegmentationLevelSetFunction (const Self &)
 ShapePriorSegmentationLevelSetFunction ()
virtual ~ShapePriorSegmentationLevelSetFunction ()
- Protected Member Functions inherited from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >
virtual VectorType AdvectionField (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd) const
virtual ScalarValueType PropagationSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd) const
 SegmentationLevelSetFunction ()
virtual ~SegmentationLevelSetFunction ()
- Protected Member Functions inherited from itk::LevelSetFunction< TImageType >
 LevelSetFunction ()
virtual ~LevelSetFunction ()
- Protected Member Functions inherited from itk::FiniteDifferenceFunction< TImageType >
 FiniteDifferenceFunction ()
 ~FiniteDifferenceFunction ()
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 LightObject ()
virtual void PrintHeader (std::ostream &os, Indent indent) const
virtual void PrintTrailer (std::ostream &os, Indent indent) const
virtual ~LightObject ()

Private Attributes

double m_DerivativeSigma

Detailed Description

template<class TImageType, class TFeatureImageType = TImageType>
class itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >

This function is used in GeodesicActiveContourShapePriorSegmentationLevelSetFilter to segment structures in an image based on user supplied edge potential map and shape model.

IMPORTANT
The LevelSetFunction, SegmentationLevelSetFunction and ShapePriorSegmentationLevelSetFunction classes contain additional information necessary to gain full understanding of how to use this function.

GeodesicActiveContourShapePriorLevelSetFunction is a subclass of the generic LevelSetFunction. It is used to segment structures in an image based on a user supplied edge potential map $ g(I) $, which has values close to zero in regions near edges (or high image gradient) and values close to one in regions with relatively constant intensity. Typically, the edge potential map is a function of the gradient, for example:

\[ g(I) = 1 / ( 1 + | (\nabla * G)(I)| ) \]

\[ g(I) = \exp^{-|(\nabla * G)(I)|} \]

where $ I $ is image intensity and $ (\nabla * G) $ is the derivative of Gaussian operator.

The edge potential image is set via the SetFeatureImage() method.

In this function both the propagation term $ P(\mathbf{x}) $ and the curvature spatial modifier term $ Z(\mathbf{x}) $ are taken directly from the edge potential image such that:

\[ P(\mathbf{x}) = g(\mathbf{x}) \]

\[ Z(\mathbf{x}) = g(\mathbf{x}) \]

An advection term $ \mathbf{A}(\mathbf{x}) $ is constructed from the negative gradient of the edge potential image.

\[ \mathbf{A}(\mathbf{x}) = -\nabla g(\mathbf{x}) \]

This term behaves like a doublet attracting the contour to the edges.

This class extends the basic LevelSetFunction with a shape prior term as developed in [1].

$ \zeta( \phi^{*} - \phi) $

where $ \phi^{*} $ is the signed distance function from a target shape and $ \zeta $ is a scalar constant.

The target shape signed distance function is supplied through a ShapeSignedDistanceFunction object. Typically, the shape is a function of a set of parameters.

See also:
LevelSetFunction
SegmentationLevelSetFunction
ShapePriorSegmentationLevelSetFunction
ShapeSignedDistanceFunction
REFERENCES
[1] Leventon, M.E. et al. "Statistical Shape Influence in Geodesic Active Contours", CVPR 2000.

Definition at line 93 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h.


Member Typedef Documentation

template<class TImageType , class TFeatureImageType = TImageType>
typedef SmartPointer< const Self > itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::ConstPointer
template<class TImageType , class TFeatureImageType = TImageType>
typedef TFeatureImageType itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::FeatureImageType
template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::FeatureScalarType itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::FeatureScalarType
template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::FloatOffsetType itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::FloatOffsetType

A floating point offset from an image grid location. Used for interpolation among grid values in a neighborhood.

Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >.

Definition at line 118 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::GlobalDataStruct itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::GlobalDataStruct

A global data type used to store values needed to compute the time step.

Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >.

Definition at line 120 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::ImageType itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::ImageType

Extract some parameters from the superclass.

Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >.

Definition at line 110 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::NeighborhoodType itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::NeighborhoodType

The type of data structure that is passed to this function object to evaluate at a pixel that does not lie on a data set boundary.

Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >.

Definition at line 114 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
typedef SmartPointer< Self > itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::Pointer
template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::RadiusType itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::RadiusType
template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::ScalarValueType itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::ScalarValueType
template<class TImageType , class TFeatureImageType = TImageType>
typedef GeodesicActiveContourShapePriorLevelSetFunction itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::Self
template<class TImageType , class TFeatureImageType = TImageType>
typedef ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType > itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::Superclass
template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::VectorImageType itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::VectorImageType

Define an image type for the advection field.

Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >.

Definition at line 119 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h.


Constructor & Destructor Documentation

template<class TImageType , class TFeatureImageType = TImageType>
itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::GeodesicActiveContourShapePriorLevelSetFunction ( )
inlineprotected
template<class TImageType , class TFeatureImageType = TImageType>
virtual itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::~GeodesicActiveContourShapePriorLevelSetFunction ( )
inlineprotectedvirtual
template<class TImageType , class TFeatureImageType = TImageType>
itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::GeodesicActiveContourShapePriorLevelSetFunction ( const Self )
protected

Member Function Documentation

template<class TImageType , class TFeatureImageType = TImageType>
virtual void itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::CalculateAdvectionImage ( )
virtual

Compute the advection field from feature image.

Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.

template<class TImageType , class TFeatureImageType = TImageType>
virtual void itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::CalculateSpeedImage ( )
virtual

Compute speed image from feature image.

Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.

template<class TImageType , class TFeatureImageType = TImageType>
virtual::itk::LightObject::Pointer itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >.

template<class TImageType , class TFeatureImageType = TImageType>
virtual ScalarValueType itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::CurvatureSpeed ( const NeighborhoodType neighborhood,
const FloatOffsetType offset,
GlobalDataStruct gd 
) const
inlinevirtual

The curvature speed is same as the propagation speed.

Reimplemented from itk::LevelSetFunction< TImageType >.

Definition at line 133 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
double itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::GetDerivativeSigma ( )
inline

Set/Get the sigma for the Gaussian kernel used to compute the gradient of the feature image needed for the advection term of the equation.

Definition at line 141 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
virtual const char* itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods)

Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >.

template<class TImageType , class TFeatureImageType = TImageType>
virtual void itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::Initialize ( const RadiusType r)
inlinevirtual

This method creates the appropriate member variable operators for the level-set calculations. The argument to this function is a the radius necessary for performing the level-set calculations.

Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.

Definition at line 145 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
static Pointer itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::New ( )
static

Method for creation through the object factory.

Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >.

template<class TImageType , class TFeatureImageType = TImageType>
void itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::operator= ( const Self )
protected
template<class TImageType , class TFeatureImageType = TImageType>
void itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
inlineprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >.

Definition at line 173 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
void itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::SetDerivativeSigma ( const double  v)
inline

Set/Get the sigma for the Gaussian kernel used to compute the gradient of the feature image needed for the advection term of the equation.

Definition at line 139 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h.


Member Data Documentation

template<class TImageType , class TFeatureImageType = TImageType>
const unsigned int itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::ImageDimension = Superclass::ImageDimension
static

Extract some parameters from the superclass.

Reimplemented from itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >.

Definition at line 124 of file itkGeodesicActiveContourShapePriorLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
double itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >::m_DerivativeSigma
private

The documentation for this class was generated from the following file: