ITK  4.2.0
Insight Segmentation and Registration Toolkit
Classes | Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Member Functions | Private Attributes
itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType > Class Template Reference

#include <itkShapePriorSegmentationLevelSetFunction.h>

+ Inheritance diagram for itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >:
+ Collaboration diagram for itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >:

List of all members.

Classes

struct  ShapePriorGlobalDataStruct

Public Types

typedef SmartPointer< const SelfConstPointer
typedef
Superclass::ContinuousIndexType 
ContinuousIndexType
typedef TFeatureImageType FeatureImageType
typedef
Superclass::FeatureScalarType 
FeatureScalarType
typedef Superclass::FloatOffsetType FloatOffsetType
typedef
Superclass::GlobalDataStruct 
GlobalDataStruct
typedef Superclass::ImageType ImageType
typedef Superclass::IndexType IndexType
typedef
Superclass::NeighborhoodType 
NeighborhoodType
typedef Superclass::PixelType PixelType
typedef SmartPointer< SelfPointer
typedef Superclass::RadiusType RadiusType
typedef Superclass::ScalarValueType ScalarValueType
typedef
ShapePriorSegmentationLevelSetFunction 
Self
typedef
ShapeFunctionType::ConstPointer 
ShapeFunctionPointer
typedef
ShapeSignedDistanceFunction
< double,
itkGetStaticConstMacro(ImageDimension) > 
ShapeFunctionType
typedef
SegmentationLevelSetFunction
< TImageType,
TFeatureImageType > 
Superclass
typedef Superclass::TimeStepType TimeStepType
typedef Superclass::VectorImageType VectorImageType
- Public Types inherited from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >
typedef
LinearInterpolateImageFunction
< ImageType
InterpolatorType
typedef Superclass::PixelRealType PixelRealType
typedef
VectorLinearInterpolateImageFunction
< VectorImageType
VectorInterpolatorType
typedef Superclass::VectorType VectorType
- Public Types inherited from itk::LevelSetFunction< TImageType >
typedef
Superclass::NeighborhoodScalesType 
NeighborhoodScalesType
- Public Types inherited from itk::FiniteDifferenceFunction< TImageType >
typedef
ZeroFluxNeumannBoundaryCondition
< ImageType
DefaultBoundaryConditionType
- Public Types inherited from itk::LightObject

Public Member Functions

virtual TimeStepType ComputeGlobalTimeStep (void *globalData) const
virtual PixelType ComputeUpdate (const NeighborhoodType &neighborhood, void *globalData, const FloatOffsetType &=FloatOffsetType(0.0))
virtual ::itk::LightObject::Pointer CreateAnother (void) const
virtual void * GetGlobalDataPointer () const
virtual const char * GetNameOfClass () const
void SetShapePriorWeight (const ScalarValueType p)
ScalarValueType GetShapePriorWeight () const
void SetShapeFunction (const ShapeFunctionType *ptr)
const ShapeFunctionTypeGetShapeFunction () const
- Public Member Functions inherited from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >
virtual void AllocateAdvectionImage ()
virtual void AllocateSpeedImage ()
virtual void CalculateAdvectionImage ()
virtual void CalculateSpeedImage ()
virtual void Initialize (const RadiusType &r)
virtual void ReverseExpansionDirection ()
virtual const FeatureImageTypeGetFeatureImage () const
virtual void SetFeatureImage (const FeatureImageType *f)
virtual ImageTypeGetSpeedImage ()
void SetSpeedImage (ImageType *s)
virtual VectorImageTypeGetAdvectionImage () const
void SetAdvectionImage (VectorImageType *s)
- Public Member Functions inherited from itk::LevelSetFunction< TImageType >
virtual ScalarValueType Compute3DMinimalCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)
virtual ScalarValueType ComputeCurvatureTerm (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)
virtual ScalarValueType ComputeMeanCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)
virtual ScalarValueType ComputeMinimalCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)
virtual ScalarValueType CurvatureSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=0) const
bool GetUseMinimalCurvature () const
virtual ScalarValueType LaplacianSmoothingSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=0) const
void SetUseMinimalCurvature (bool b)
void UseMinimalCurvatureOff ()
void UseMinimalCurvatureOn ()
virtual void SetAdvectionWeight (const ScalarValueType a)
ScalarValueType GetAdvectionWeight () const
virtual void SetPropagationWeight (const ScalarValueType p)
ScalarValueType GetPropagationWeight () const
virtual void SetCurvatureWeight (const ScalarValueType c)
ScalarValueType GetCurvatureWeight () const
void SetLaplacianSmoothingWeight (const ScalarValueType c)
ScalarValueType GetLaplacianSmoothingWeight () const
void SetEpsilonMagnitude (const ScalarValueType e)
ScalarValueType GetEpsilonMagnitude () const
- Public Member Functions inherited from itk::FiniteDifferenceFunction< TImageType >
const NeighborhoodScalesType ComputeNeighborhoodScales () const
const RadiusTypeGetRadius () const
virtual void InitializeIteration ()
void SetRadius (const RadiusType &r)
void SetScaleCoefficients (PixelRealType vals[ImageDimension])
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
virtual int GetReferenceCount () const
 itkCloneMacro (Self)
void Print (std::ostream &os, Indent indent=0) const
virtual void Register () const
virtual void SetReferenceCount (int)
virtual void UnRegister () const

Static Public Member Functions

static Pointer New ()

Static Public Attributes

static const unsigned int ImageDimension = Superclass::ImageDimension
- Static Public Attributes inherited from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >
- Static Public Attributes inherited from itk::LevelSetFunction< TImageType >
- Static Public Attributes inherited from itk::FiniteDifferenceFunction< TImageType >

Protected Member Functions

void operator= (const Self &)
void PrintSelf (std::ostream &os, Indent indent) const
 ShapePriorSegmentationLevelSetFunction (const Self &)
- Protected Member Functions inherited from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >
virtual VectorType AdvectionField (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd) const
virtual ScalarValueType PropagationSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd) const
 SegmentationLevelSetFunction ()
virtual ~SegmentationLevelSetFunction ()
- Protected Member Functions inherited from itk::LevelSetFunction< TImageType >
 LevelSetFunction ()
virtual ~LevelSetFunction ()
- Protected Member Functions inherited from itk::FiniteDifferenceFunction< TImageType >
 FiniteDifferenceFunction ()
 ~FiniteDifferenceFunction ()
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 LightObject ()
virtual void PrintHeader (std::ostream &os, Indent indent) const
virtual void PrintTrailer (std::ostream &os, Indent indent) const
virtual ~LightObject ()

Private Attributes

ShapeFunctionPointer m_ShapeFunction
ScalarValueType m_ShapePriorWeight
virtual void ReleaseGlobalDataPointer (void *GlobalData) const
 ShapePriorSegmentationLevelSetFunction ()
virtual ~ShapePriorSegmentationLevelSetFunction ()

Additional Inherited Members

- Protected Attributes inherited from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >
VectorImageType::Pointer m_AdvectionImage
FeatureImageType::ConstPointer m_FeatureImage
InterpolatorType::Pointer m_Interpolator
ImageType::Pointer m_SpeedImage
Functor::VectorCast< typename
VectorInterpolatorType::OutputType,
VectorType
m_VectorCast
VectorInterpolatorType::Pointer m_VectorInterpolator
- Protected Attributes inherited from itk::LevelSetFunction< TImageType >
ScalarValueType m_AdvectionWeight
OffsetValueType m_Center
ScalarValueType m_CurvatureWeight
ScalarValueType m_EpsilonMagnitude
ScalarValueType m_PropagationWeight
bool m_UseMinimalCurvature
OffsetValueType m_xStride [itkGetStaticConstMacro(ImageDimension)]
std::slice x_slice [itkGetStaticConstMacro(ImageDimension)]
ScalarValueType m_LaplacianSmoothingWeight
- Protected Attributes inherited from itk::FiniteDifferenceFunction< TImageType >
RadiusType m_Radius
PixelRealType m_ScaleCoefficients [ImageDimension]
- Protected Attributes inherited from itk::LightObject
InternalReferenceCountType m_ReferenceCount
SimpleFastMutexLock m_ReferenceCountLock

Detailed Description

template<class TImageType, class TFeatureImageType = TImageType>
class itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >

This function is used in ShapePriorSegmentationLevelSetFilter to segment structures in an image based on user supplied edge potential map and shape model.

This class extends the basic LevelSetFunction with a shape prior term as developed in [1].

$ \zeta( \phi^{*} - \phi) $

where $ \phi^{*} $ is the signed distance function from a target shape and $ \zeta $ is a scalar constant.

The target shape signed distance function is supplied through a ShapeSignedDistanceFunction object.

See also:
LevelSetFunction
SegmentationLevelSetImageFunction
ShapeSignedDistanceFunction
REFERENCES
[1] Leventon, M.E. et al. "Statistical Shape Influence in Geodesic Active Contours", CVPR 2000.

Definition at line 55 of file itkShapePriorSegmentationLevelSetFunction.h.


Member Typedef Documentation

template<class TImageType , class TFeatureImageType = TImageType>
typedef SmartPointer< const Self > itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ConstPointer
template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::ContinuousIndexType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ContinuousIndexType

Continuous index type recognized by the interpolator

Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.

Definition at line 84 of file itkShapePriorSegmentationLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
typedef TFeatureImageType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::FeatureImageType
template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::FeatureScalarType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::FeatureScalarType
template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::FloatOffsetType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::FloatOffsetType

A floating point offset from an image grid location. Used for interpolation among grid values in a neighborhood.

Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.

Definition at line 79 of file itkShapePriorSegmentationLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::GlobalDataStruct itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::GlobalDataStruct

A global data type used to store values needed to compute the time step.

Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.

Definition at line 120 of file itkShapePriorSegmentationLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::ImageType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ImageType
template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::IndexType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::IndexType
template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::NeighborhoodType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::NeighborhoodType

The type of data structure that is passed to this function object to evaluate at a pixel that does not lie on a data set boundary.

Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.

Definition at line 75 of file itkShapePriorSegmentationLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::PixelType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::PixelType
template<class TImageType , class TFeatureImageType = TImageType>
typedef SmartPointer< Self > itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::Pointer
template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::RadiusType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::RadiusType
template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::ScalarValueType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ScalarValueType
template<class TImageType , class TFeatureImageType = TImageType>
typedef ShapePriorSegmentationLevelSetFunction itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::Self
template<class TImageType , class TFeatureImageType = TImageType>
typedef ShapeFunctionType::ConstPointer itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ShapeFunctionPointer

Definition at line 93 of file itkShapePriorSegmentationLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
typedef ShapeSignedDistanceFunction< double, itkGetStaticConstMacro(ImageDimension) > itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ShapeFunctionType

ShapeFunction typedef support.

Definition at line 92 of file itkShapePriorSegmentationLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
typedef SegmentationLevelSetFunction< TImageType, TFeatureImageType > itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::Superclass
template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::TimeStepType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::TimeStepType

Convenient typedefs.

Reimplemented from itk::LevelSetFunction< TImageType >.

Definition at line 82 of file itkShapePriorSegmentationLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
typedef Superclass::VectorImageType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::VectorImageType

Constructor & Destructor Documentation

template<class TImageType , class TFeatureImageType = TImageType>
itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ShapePriorSegmentationLevelSetFunction ( )
protected

Release the global data structure.

template<class TImageType , class TFeatureImageType = TImageType>
virtual itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::~ShapePriorSegmentationLevelSetFunction ( )
inlineprotectedvirtual

Release the global data structure.

Definition at line 142 of file itkShapePriorSegmentationLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ShapePriorSegmentationLevelSetFunction ( const Self )
protected

Member Function Documentation

template<class TImageType , class TFeatureImageType = TImageType>
virtual TimeStepType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ComputeGlobalTimeStep ( void *  globalData) const
virtual

Compute global time step from the global data structure.

Reimplemented from itk::LevelSetFunction< TImageType >.

template<class TImageType , class TFeatureImageType = TImageType>
virtual PixelType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ComputeUpdate ( const NeighborhoodType neighborhood,
void *  globalData,
const FloatOffsetType = FloatOffsetType(0.0) 
)
virtual

Compute the equation value with the additional shape prior term.

Reimplemented from itk::LevelSetFunction< TImageType >.

template<class TImageType , class TFeatureImageType = TImageType>
virtual::itk::LightObject::Pointer itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LevelSetFunction< TImageType >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.

template<class TImageType , class TFeatureImageType = TImageType>
virtual void* itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetGlobalDataPointer ( ) const
inlinevirtual
template<class TImageType , class TFeatureImageType = TImageType>
virtual const char* itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetNameOfClass ( ) const
virtual
template<class TImageType , class TFeatureImageType = TImageType>
const ShapeFunctionType* itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetShapeFunction ( ) const
inline

The ShapeFunction encapsulates the signed distance to the shape used to influence the evolution of the level set.

Definition at line 106 of file itkShapePriorSegmentationLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
ScalarValueType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetShapePriorWeight ( ) const
inline

Zeta. The ShapePriorWeight scales the shape prior term values.

Definition at line 98 of file itkShapePriorSegmentationLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
static Pointer itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::New ( )
static

Method for creation through the object factory.

Reimplemented from itk::LevelSetFunction< TImageType >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.

template<class TImageType , class TFeatureImageType = TImageType>
void itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::operator= ( const Self )
protected
template<class TImageType , class TFeatureImageType = TImageType>
void itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::LevelSetFunction< TImageType >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >.

template<class TImageType , class TFeatureImageType = TImageType>
virtual void itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ReleaseGlobalDataPointer ( void *  GlobalData) const
inlinevirtual

Release the global data structure.

Reimplemented from itk::LevelSetFunction< TImageType >.

Definition at line 138 of file itkShapePriorSegmentationLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
void itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::SetShapeFunction ( const ShapeFunctionType ptr)
inline

The ShapeFunction encapsulates the signed distance to the shape used to influence the evolution of the level set.

Definition at line 104 of file itkShapePriorSegmentationLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
void itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::SetShapePriorWeight ( const ScalarValueType  p)
inline

Zeta. The ShapePriorWeight scales the shape prior term values.

Definition at line 96 of file itkShapePriorSegmentationLevelSetFunction.h.


Member Data Documentation

template<class TImageType , class TFeatureImageType = TImageType>
const unsigned int itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ImageDimension = Superclass::ImageDimension
static
template<class TImageType , class TFeatureImageType = TImageType>
ShapeFunctionPointer itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::m_ShapeFunction
private

Definition at line 154 of file itkShapePriorSegmentationLevelSetFunction.h.

template<class TImageType , class TFeatureImageType = TImageType>
ScalarValueType itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >::m_ShapePriorWeight
private

Definition at line 155 of file itkShapePriorSegmentationLevelSetFunction.h.


The documentation for this class was generated from the following file: