itk::HistogramThresholdCalculator< THistogram, TOutput > Class Template Reference

#include <itkHistogramThresholdCalculator.h>

Inheritance diagram for itk::HistogramThresholdCalculator< THistogram, TOutput >:

Collaboration diagram for itk::HistogramThresholdCalculator< THistogram, TOutput >:

List of all members.

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef SimpleDataObjectDecorator < OutputType >	DecoratedOutputType
typedef THistogram	HistogramType
typedef TOutput	OutputType
typedef SmartPointer< Self >	Pointer
typedef HistogramThresholdCalculator	Self
typedef ProcessObject	Superclass
Public Types inherited from itk::ProcessObject
typedef DataObject::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef std::vector < DataObjectPointer >	DataObjectPointerArray
typedef DataObjectPointerArray::size_type	DataObjectPointerArraySizeType
typedef std::vector < DataObjectIdentifierType >	NameArray
Public Types inherited from itk::Object
Public Types inherited from itk::LightObject

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
const HistogramType *	GetInput () const
virtual const char *	GetNameOfClass () const
DecoratedOutputType *	GetOutput ()
const OutputType &	GetThreshold ()
virtual DataObject::Pointer	MakeOutput (DataObjectPointerArraySizeType)
void	SetInput (const HistogramType *input)
Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual void	EnlargeOutputRequestedRegion (DataObject *)
virtual const bool &	GetAbortGenerateData ()
NameArray	GetInputNames () const
MultiThreader *	GetMultiThreader () const
DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
NameArray	GetOutputNames () const
virtual const float &	GetProgress ()
NameArray	GetRequiredInputNames () const
bool	HasInput (const DataObjectIdentifierType &key) const
bool	HasOutput (const DataObjectIdentifierType &key) const
virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)
virtual void	PrepareOutputs ()
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	ResetPipeline ()
virtual void	SetAbortGenerateData (bool _arg)
virtual void	SetProgress (float _arg)
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float amount)
DataObjectPointerArray	GetInputs ()
DataObjectPointerArray	GetOutputs ()
DataObjectPointerArray	GetIndexedInputs ()
DataObjectPointerArray	GetIndexedOutputs ()
DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const
virtual void	SetReleaseDataFlag (bool flag)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool &	GetReleaseDataBeforeUpdateFlag ()
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	SetNumberOfThreads (ThreadIdType _arg)
virtual const ThreadIdType &	GetNumberOfThreads ()
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary (void)
const MetaDataDictionary &	GetMetaDataDictionary (void) const
virtual unsigned long	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	Register () const
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int)
virtual void	UnRegister () const
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	HistogramThresholdCalculator ()
virtual	~HistogramThresholdCalculator ()
Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)
virtual void	AddOutput (DataObject *output)
bool	AddRequiredInputName (const DataObjectIdentifierType &)
virtual void	CacheInputReleaseDataFlags ()
virtual void	GenerateData ()
virtual void	GenerateInputRequestedRegion ()
virtual void	GenerateOutputInformation ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs ()
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs ()
bool	IsIndexedName (const DataObjectIdentifierType &) const
bool	IsRequiredInputName (const DataObjectIdentifierType &) const
	itkLegacyMacro (virtual void RemoveInput(DataObject *input))
	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
DataObjectPointerArraySizeType	MakeIndexFromName (const DataObjectIdentifierType &) const
DataObjectIdentifierType	MakeNameFromIndex (DataObjectPointerArraySizeType) const
void	PrintSelf (std::ostream &os, Indent indent) const
	ProcessObject ()
virtual void	PropagateResetPipeline ()
virtual void	ReleaseInputs ()
virtual void	RemoveInput (const DataObjectIdentifierType &key)
virtual void	RemoveInput (DataObjectPointerArraySizeType)
virtual void	RemoveOutput (const DataObjectIdentifierType &key)
virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)
bool	RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void	RestoreInputReleaseDataFlags ()
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void	SetPrimaryInput (DataObject *input)
virtual void	SetPrimaryOutput (DataObject *output)
void	SetRequiredInputNames (const NameArray &)
virtual void	VerifyInputInformation ()
virtual void	VerifyPreconditions ()
	~ProcessObject ()
DataObject *	GetInput (const DataObjectIdentifierType &key)
const DataObject *	GetInput (const DataObjectIdentifierType &key) const
DataObject *	GetInput (DataObjectPointerArraySizeType)
const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryInput ()
const DataObject *	GetPrimaryInput () const
DataObject *	GetOutput (const DataObjectIdentifierType &key)
const DataObject *	GetOutput (const DataObjectIdentifierType &key) const
DataObject *	GetOutput (DataObjectPointerArraySizeType idx)
const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryOutput ()
const DataObject *	GetPrimaryOutput () const
virtual void	PushBackInput (const DataObject *input)
virtual void	PopBackInput ()
virtual void	PushFrontInput (const DataObject *input)
virtual void	PopFrontInput ()
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
virtual	~Object ()
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Private Member Functions
	HistogramThresholdCalculator (const Self &)
void	operator= (const Self &)

Additional Inherited Members
Protected Attributes inherited from itk::ProcessObject
bool	m_Updating
TimeStamp	m_OutputInformationMTime

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Detailed Description

template<class THistogram, class TOutput>
class itk::HistogramThresholdCalculator< THistogram, TOutput >

Base class to compute a threshold value based on the histogram of an image.

Author:

Richard Beare. Department of Medicine, Monash University, Melbourne, Australia.

Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.

This implementation was taken from the Insight Journal paper: http://hdl.handle.net/10380/3279 or http://www.insight-journal.org/browse/publication/811

Definition at line 46 of file itkHistogramThresholdCalculator.h.

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Member Typedef Documentation

template<class THistogram , class TOutput >

typedef SmartPointer<const Self> itk::HistogramThresholdCalculator< THistogram, TOutput >::ConstPointer

Reimplemented from itk::ProcessObject.

Reimplemented in itk::IntermodesThresholdCalculator< THistogram, TOutput >, itk::LiThresholdCalculator< THistogram, TOutput >, itk::YenThresholdCalculator< THistogram, TOutput >, itk::IsoDataThresholdCalculator< THistogram, TOutput >, itk::HuangThresholdCalculator< THistogram, TOutput >, itk::MaximumEntropyThresholdCalculator< THistogram, TOutput >, itk::TriangleThresholdCalculator< THistogram, TOutput >, itk::KittlerIllingworthThresholdCalculator< THistogram, TOutput >, itk::RenyiEntropyThresholdCalculator< THistogram, TOutput >, itk::MomentsThresholdCalculator< THistogram, TOutput >, itk::ShanbhagThresholdCalculator< THistogram, TOutput >, and itk::OtsuThresholdCalculator< THistogram, TOutput >.

Definition at line 53 of file itkHistogramThresholdCalculator.h.

template<class THistogram , class TOutput >

typedef SimpleDataObjectDecorator<OutputType> itk::HistogramThresholdCalculator< THistogram, TOutput >::DecoratedOutputType

Definition at line 66 of file itkHistogramThresholdCalculator.h.

template<class THistogram , class TOutput >

typedef THistogram itk::HistogramThresholdCalculator< THistogram, TOutput >::HistogramType

Type definition for the input histogram.

Reimplemented in itk::IntermodesThresholdCalculator< THistogram, TOutput >, itk::LiThresholdCalculator< THistogram, TOutput >, itk::YenThresholdCalculator< THistogram, TOutput >, itk::IsoDataThresholdCalculator< THistogram, TOutput >, itk::HuangThresholdCalculator< THistogram, TOutput >, itk::MaximumEntropyThresholdCalculator< THistogram, TOutput >, itk::TriangleThresholdCalculator< THistogram, TOutput >, itk::KittlerIllingworthThresholdCalculator< THistogram, TOutput >, itk::RenyiEntropyThresholdCalculator< THistogram, TOutput >, itk::MomentsThresholdCalculator< THistogram, TOutput >, itk::ShanbhagThresholdCalculator< THistogram, TOutput >, and itk::OtsuThresholdCalculator< THistogram, TOutput >.

Definition at line 59 of file itkHistogramThresholdCalculator.h.

template<class THistogram , class TOutput >

typedef TOutput itk::HistogramThresholdCalculator< THistogram, TOutput >::OutputType

output object type

Reimplemented in itk::IntermodesThresholdCalculator< THistogram, TOutput >, itk::LiThresholdCalculator< THistogram, TOutput >, itk::YenThresholdCalculator< THistogram, TOutput >, itk::IsoDataThresholdCalculator< THistogram, TOutput >, itk::HuangThresholdCalculator< THistogram, TOutput >, itk::MaximumEntropyThresholdCalculator< THistogram, TOutput >, itk::TriangleThresholdCalculator< THistogram, TOutput >, itk::KittlerIllingworthThresholdCalculator< THistogram, TOutput >, itk::RenyiEntropyThresholdCalculator< THistogram, TOutput >, itk::MomentsThresholdCalculator< THistogram, TOutput >, itk::ShanbhagThresholdCalculator< THistogram, TOutput >, and itk::OtsuThresholdCalculator< THistogram, TOutput >.

Definition at line 65 of file itkHistogramThresholdCalculator.h.

template<class THistogram , class TOutput >

typedef SmartPointer<Self> itk::HistogramThresholdCalculator< THistogram, TOutput >::Pointer

Reimplemented from itk::ProcessObject.

Reimplemented in itk::IntermodesThresholdCalculator< THistogram, TOutput >, itk::LiThresholdCalculator< THistogram, TOutput >, itk::YenThresholdCalculator< THistogram, TOutput >, itk::IsoDataThresholdCalculator< THistogram, TOutput >, itk::HuangThresholdCalculator< THistogram, TOutput >, itk::MaximumEntropyThresholdCalculator< THistogram, TOutput >, itk::TriangleThresholdCalculator< THistogram, TOutput >, itk::KittlerIllingworthThresholdCalculator< THistogram, TOutput >, itk::RenyiEntropyThresholdCalculator< THistogram, TOutput >, itk::MomentsThresholdCalculator< THistogram, TOutput >, itk::ShanbhagThresholdCalculator< THistogram, TOutput >, and itk::OtsuThresholdCalculator< THistogram, TOutput >.

Definition at line 52 of file itkHistogramThresholdCalculator.h.

template<class THistogram , class TOutput >

typedef HistogramThresholdCalculator itk::HistogramThresholdCalculator< THistogram, TOutput >::Self

Standard class typedefs.

Reimplemented from itk::ProcessObject.

Reimplemented in itk::IntermodesThresholdCalculator< THistogram, TOutput >, itk::LiThresholdCalculator< THistogram, TOutput >, itk::YenThresholdCalculator< THistogram, TOutput >, itk::IsoDataThresholdCalculator< THistogram, TOutput >, itk::HuangThresholdCalculator< THistogram, TOutput >, itk::MaximumEntropyThresholdCalculator< THistogram, TOutput >, itk::TriangleThresholdCalculator< THistogram, TOutput >, itk::KittlerIllingworthThresholdCalculator< THistogram, TOutput >, itk::RenyiEntropyThresholdCalculator< THistogram, TOutput >, itk::MomentsThresholdCalculator< THistogram, TOutput >, itk::ShanbhagThresholdCalculator< THistogram, TOutput >, and itk::OtsuThresholdCalculator< THistogram, TOutput >.

Definition at line 50 of file itkHistogramThresholdCalculator.h.

template<class THistogram , class TOutput >

typedef ProcessObject itk::HistogramThresholdCalculator< THistogram, TOutput >::Superclass

Reimplemented from itk::ProcessObject.

Reimplemented in itk::IntermodesThresholdCalculator< THistogram, TOutput >, itk::LiThresholdCalculator< THistogram, TOutput >, itk::YenThresholdCalculator< THistogram, TOutput >, itk::IsoDataThresholdCalculator< THistogram, TOutput >, itk::HuangThresholdCalculator< THistogram, TOutput >, itk::MaximumEntropyThresholdCalculator< THistogram, TOutput >, itk::TriangleThresholdCalculator< THistogram, TOutput >, itk::KittlerIllingworthThresholdCalculator< THistogram, TOutput >, itk::RenyiEntropyThresholdCalculator< THistogram, TOutput >, itk::MomentsThresholdCalculator< THistogram, TOutput >, itk::ShanbhagThresholdCalculator< THistogram, TOutput >, and itk::OtsuThresholdCalculator< THistogram, TOutput >.

Definition at line 51 of file itkHistogramThresholdCalculator.h.

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Constructor & Destructor Documentation

template<class THistogram , class TOutput >

itk::HistogramThresholdCalculator< THistogram, TOutput >::HistogramThresholdCalculator ( )

inlineprotected

Definition at line 108 of file itkHistogramThresholdCalculator.h.

References itk::ProcessObject::SetNthOutput(), and itk::ProcessObject::SetNumberOfRequiredOutputs().

template<class THistogram , class TOutput >

virtual itk::HistogramThresholdCalculator< THistogram, TOutput >::~HistogramThresholdCalculator ( )

inlineprotectedvirtual

Definition at line 113 of file itkHistogramThresholdCalculator.h.

template<class THistogram , class TOutput >

itk::HistogramThresholdCalculator< THistogram, TOutput >::HistogramThresholdCalculator ( const Self &  )

private

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Member Function Documentation

template<class THistogram , class TOutput >

virtual::itk::LightObject::Pointer itk::HistogramThresholdCalculator< THistogram, TOutput >::CreateAnother ( void  ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

Reimplemented in itk::IntermodesThresholdCalculator< THistogram, TOutput >, itk::LiThresholdCalculator< THistogram, TOutput >, itk::YenThresholdCalculator< THistogram, TOutput >, itk::IsoDataThresholdCalculator< THistogram, TOutput >, itk::HuangThresholdCalculator< THistogram, TOutput >, itk::MaximumEntropyThresholdCalculator< THistogram, TOutput >, itk::TriangleThresholdCalculator< THistogram, TOutput >, itk::KittlerIllingworthThresholdCalculator< THistogram, TOutput >, itk::RenyiEntropyThresholdCalculator< THistogram, TOutput >, itk::MomentsThresholdCalculator< THistogram, TOutput >, itk::ShanbhagThresholdCalculator< THistogram, TOutput >, and itk::OtsuThresholdCalculator< THistogram, TOutput >.

template<class THistogram , class TOutput >

const HistogramType* itk::HistogramThresholdCalculator< THistogram, TOutput >::GetInput ( void  ) const

inline

Definition at line 74 of file itkHistogramThresholdCalculator.h.

References itk::ProcessObject::GetInput().

template<class THistogram , class TOutput >

virtual const char* itk::HistogramThresholdCalculator< THistogram, TOutput >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::ProcessObject.

Reimplemented in itk::IntermodesThresholdCalculator< THistogram, TOutput >, itk::LiThresholdCalculator< THistogram, TOutput >, itk::YenThresholdCalculator< THistogram, TOutput >, itk::IsoDataThresholdCalculator< THistogram, TOutput >, itk::HuangThresholdCalculator< THistogram, TOutput >, itk::MaximumEntropyThresholdCalculator< THistogram, TOutput >, itk::TriangleThresholdCalculator< THistogram, TOutput >, itk::KittlerIllingworthThresholdCalculator< THistogram, TOutput >, itk::RenyiEntropyThresholdCalculator< THistogram, TOutput >, itk::MomentsThresholdCalculator< THistogram, TOutput >, itk::ShanbhagThresholdCalculator< THistogram, TOutput >, and itk::OtsuThresholdCalculator< THistogram, TOutput >.

template<class THistogram , class TOutput >

DecoratedOutputType* itk::HistogramThresholdCalculator< THistogram, TOutput >::GetOutput ( void  )

inline

Definition at line 83 of file itkHistogramThresholdCalculator.h.

References itk::ProcessObject::GetOutput().

template<class THistogram , class TOutput >

const OutputType& itk::HistogramThresholdCalculator< THistogram, TOutput >::GetThreshold ( )

inline

Definition at line 98 of file itkHistogramThresholdCalculator.h.

References itk::ProcessObject::GetOutput().

template<class THistogram , class TOutput >

virtual DataObject::Pointer itk::HistogramThresholdCalculator< THistogram, TOutput >::MakeOutput ( DataObjectPointerArraySizeType  idx )

inlinevirtual

Make a DataObject of the correct type to used as the specified output. Every ProcessObject subclass must be able to create a DataObject that can be used as a specified output. This method is automatically called when DataObject::DisconnectPipeline() is called. DataObject::DisconnectPipeline, disconnects a data object from being an output of its current source. When the data object is disconnected, the ProcessObject needs to construct a replacement output data object so that the ProcessObject is in a valid state. So DataObject::DisconnectPipeline eventually calls ProcessObject::MakeOutput. Note that MakeOutput always returns a itkSmartPointer to a DataObject. ImageSource and MeshSource override this method to create the correct type of image and mesh respectively. If a filter has multiple outputs of different types, then that filter must provide an implementation of MakeOutput().

Reimplemented from itk::ProcessObject.

Definition at line 93 of file itkHistogramThresholdCalculator.h.

References itk::SmartPointer< TObjectType >::GetPointer().

template<class THistogram , class TOutput >

static Pointer itk::HistogramThresholdCalculator< THistogram, TOutput >::New ( )

static

Method for creation through the object factory.

Reimplemented from itk::Object.

Reimplemented in itk::IntermodesThresholdCalculator< THistogram, TOutput >, itk::LiThresholdCalculator< THistogram, TOutput >, itk::YenThresholdCalculator< THistogram, TOutput >, itk::IsoDataThresholdCalculator< THistogram, TOutput >, itk::HuangThresholdCalculator< THistogram, TOutput >, itk::MaximumEntropyThresholdCalculator< THistogram, TOutput >, itk::TriangleThresholdCalculator< THistogram, TOutput >, itk::KittlerIllingworthThresholdCalculator< THistogram, TOutput >, itk::RenyiEntropyThresholdCalculator< THistogram, TOutput >, itk::MomentsThresholdCalculator< THistogram, TOutput >, itk::ShanbhagThresholdCalculator< THistogram, TOutput >, and itk::OtsuThresholdCalculator< THistogram, TOutput >.

template<class THistogram , class TOutput >

void itk::HistogramThresholdCalculator< THistogram, TOutput >::operator= ( const Self &  )

private

Time when GenerateOutputInformation was last called.

Reimplemented from itk::ProcessObject.

Reimplemented in itk::IntermodesThresholdCalculator< THistogram, TOutput >, itk::RenyiEntropyThresholdCalculator< THistogram, TOutput >, itk::HuangThresholdCalculator< THistogram, TOutput >, itk::IsoDataThresholdCalculator< THistogram, TOutput >, itk::KittlerIllingworthThresholdCalculator< THistogram, TOutput >, itk::LiThresholdCalculator< THistogram, TOutput >, itk::YenThresholdCalculator< THistogram, TOutput >, itk::MaximumEntropyThresholdCalculator< THistogram, TOutput >, itk::TriangleThresholdCalculator< THistogram, TOutput >, itk::OtsuThresholdCalculator< THistogram, TOutput >, itk::MomentsThresholdCalculator< THistogram, TOutput >, and itk::ShanbhagThresholdCalculator< THistogram, TOutput >.

template<class THistogram , class TOutput >

void itk::HistogramThresholdCalculator< THistogram, TOutput >::SetInput ( const HistogramType *  input )

inline

Definition at line 68 of file itkHistogramThresholdCalculator.h.

References itk::ProcessObject::SetNthInput().

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The documentation for this class was generated from the following file:

• itkHistogramThresholdCalculator.h