itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform > Class Template Reference

#include <itkImageRegistrationMethodv4.h>

Inheritance diagram for itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >:

Collaboration diagram for itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >:

List of all members.

Public Types
typedef CompositeTransformType::Pointer	CompositeTransformPointer
typedef CompositeTransform < RealType, ImageDimension >	CompositeTransformType
typedef SmartPointer< const Self >	ConstPointer
typedef ProcessObject::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType
typedef DecoratedOutputTransformType::Pointer	DecoratedOutputTransformPointer
typedef DataObjectDecorator < OutputTransformType >	DecoratedOutputTransformType
typedef OutputTransformType::DerivativeType	DerivativeType
typedef DerivativeType::ValueType	DerivativeValueType
typedef FixedImageType::Pointer	FixedImagePointer
typedef TFixedImage	FixedImageType
typedef FixedInterpolatorType::Pointer	FixedInterpolatorPointer
typedef InterpolateImageFunction < FixedImageType, RealType >	FixedInterpolatorType
typedef InitialTransformType::Pointer	InitialTransformPointer
typedef Transform< RealType, ImageDimension, ImageDimension >	InitialTransformType
typedef MetricType::Pointer	MetricPointer
typedef MetricType::FixedSampledPointSetType	MetricSamplePointSetType
typedef Array< RealType >	MetricSamplingPercentageArrayType
enum	MetricSamplingStrategyType {   NONE,   REGULAR,   RANDOM }
typedef ImageToImageMetricv4 < FixedImageType, MovingImageType >	MetricType
typedef MovingImageType::Pointer	MovingImagePointer
typedef TMovingImage	MovingImageType
typedef MovingInterpolatorType::Pointer	MovingInterpolatorPointer
typedef InterpolateImageFunction < MovingImageType, RealType >	MovingInterpolatorType
typedef OptimizerType::Pointer	OptimizerPointer
typedef ObjectToObjectOptimizerBase	OptimizerType
typedef OutputTransformType::Pointer	OutputTransformPointer
typedef TOutputTransform	OutputTransformType
typedef SmartPointer< Self >	Pointer
typedef OutputTransformType::ScalarType	RealType
typedef ImageRegistrationMethodv4	Self
typedef Array< SizeValueType >	ShrinkFactorsArrayType
typedef Array< RealType >	SmoothingSigmasArrayType
typedef ProcessObject	Superclass
typedef TransformParametersAdaptorType::Pointer	TransformParametersAdaptorPointer
typedef std::vector < TransformParametersAdaptorPointer >	TransformParametersAdaptorsContainerType
typedef TransformParametersAdaptor < OutputTransformType >	TransformParametersAdaptorType
Public Types inherited from itk::ProcessObject
typedef DataObject::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef std::vector < DataObjectPointer >	DataObjectPointerArray
typedef std::vector < DataObjectIdentifierType >	NameArray
Public Types inherited from itk::Object
Public Types inherited from itk::LightObject

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual const RealType &	GetCurrentConvergenceValue ()
virtual const SizeValueType &	GetCurrentIteration ()
virtual SizeValueType	GetCurrentLevel () const
virtual const RealType &	GetCurrentMetricValue ()
virtual const bool &	GetIsConverged ()
virtual const char *	GetNameOfClass () const
virtual const DecoratedOutputTransformType *	GetOutput () const
virtual DataObjectPointer	MakeOutput (DataObjectPointerArraySizeType)
void	SetMetricSamplingPercentage (const RealType)
void	StartRegistration ()
virtual void	SetFixedImage (const FixedImageType *input)
virtual const FixedImageType *	GetFixedImage () const
virtual void	SetMovingImage (const MovingImageType *input)
virtual const MovingImageType *	GetMovingImage () const
virtual void	SetFixedInitialTransform (InitialTransformType *_arg)
virtual const InitialTransformType *	GetFixedInitialTransform ()
virtual void	SetMovingInitialTransform (InitialTransformType *_arg)
virtual const InitialTransformType *	GetMovingInitialTransform ()
virtual void	SetFixedInterpolator (FixedInterpolatorType *_arg)
virtual const FixedInterpolatorType *	GetFixedInterpolator ()
virtual void	SetMovingInterpolator (MovingInterpolatorType *_arg)
virtual const MovingInterpolatorType *	GetMovingInterpolator ()
virtual void	SetMetric (MetricType *_arg)
virtual MetricType *	GetMetric ()
virtual void	SetMetricSamplingStrategy (MetricSamplingStrategyType _arg)
virtual MetricSamplingStrategyType	GetMetricSamplingStrategy () const
virtual void	SetMetricSamplingPercentagePerLevel (MetricSamplingPercentageArrayType _arg)
virtual MetricSamplingPercentageArrayType	GetMetricSamplingPercentagePerLevel () const
virtual void	SetOptimizer (OptimizerType *_arg)
virtual OptimizerType *	GetOptimizer ()
void	SetTransformParametersAdaptorsPerLevel (TransformParametersAdaptorsContainerType &)
const TransformParametersAdaptorsContainerType &	GetTransformParametersAdaptorsPerLevel () const
void	SetNumberOfLevels (const SizeValueType)
virtual SizeValueType	GetNumberOfLevels () const
virtual void	SetShrinkFactorsPerLevel (ShrinkFactorsArrayType _arg)
virtual ShrinkFactorsArrayType	GetShrinkFactorsPerLevel () const
virtual void	SetSmoothingSigmasPerLevel (SmoothingSigmasArrayType _arg)
virtual SmoothingSigmasArrayType	GetSmoothingSigmasPerLevel () const
Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual void	EnlargeOutputRequestedRegion (DataObject *)
virtual const bool &	GetAbortGenerateData ()
NameArray	GetInputNames () const
MultiThreader *	GetMultiThreader () const
DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
NameArray	GetOutputNames () const
virtual const float &	GetProgress ()
NameArray	GetRequiredInputNames () const
bool	HasInput (const DataObjectIdentifierType &key) const
bool	HasOutput (const DataObjectIdentifierType &key) const
virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)
virtual void	PrepareOutputs ()
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	ResetPipeline ()
virtual void	SetAbortGenerateData (bool _arg)
virtual void	SetProgress (float _arg)
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float amount)
DataObjectPointerArray	GetInputs ()
DataObjectPointerArray	GetOutputs ()
DataObjectPointerArray	GetIndexedInputs ()
DataObjectPointerArray	GetIndexedOutputs ()
DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const
virtual void	SetReleaseDataFlag (bool flag)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool &	GetReleaseDataBeforeUpdateFlag ()
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	SetNumberOfThreads (ThreadIdType _arg)
virtual const ThreadIdType &	GetNumberOfThreads ()
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary (void)
const MetaDataDictionary &	GetMetaDataDictionary (void) const
virtual unsigned long	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	Register () const
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int)
virtual void	UnRegister () const
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Attributes
static const unsigned int	ImageDimension = TFixedImage::ImageDimension

Protected Member Functions
virtual void	GenerateData ()
	ImageRegistrationMethodv4 ()
virtual void	InitializeRegistrationAtEachLevel (const SizeValueType)
virtual void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	SetMetricSamplePoints ()
virtual	~ImageRegistrationMethodv4 ()
Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)
virtual void	AddOutput (DataObject *output)
bool	AddRequiredInputName (const DataObjectIdentifierType &)
virtual void	CacheInputReleaseDataFlags ()
virtual void	GenerateInputRequestedRegion ()
virtual void	GenerateOutputInformation ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs ()
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs ()
bool	IsIndexedName (const DataObjectIdentifierType &) const
bool	IsRequiredInputName (const DataObjectIdentifierType &) const
	itkLegacyMacro (virtual void RemoveInput(DataObject *input))
	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
DataObjectPointerArraySizeType	MakeIndexFromName (const DataObjectIdentifierType &) const
DataObjectIdentifierType	MakeNameFromIndex (DataObjectPointerArraySizeType) const
	ProcessObject ()
virtual void	PropagateResetPipeline ()
virtual void	ReleaseInputs ()
virtual void	RemoveInput (const DataObjectIdentifierType &key)
virtual void	RemoveInput (DataObjectPointerArraySizeType)
virtual void	RemoveOutput (const DataObjectIdentifierType &key)
virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)
bool	RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void	RestoreInputReleaseDataFlags ()
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void	SetPrimaryInput (DataObject *input)
virtual void	SetPrimaryOutput (DataObject *output)
void	SetRequiredInputNames (const NameArray &)
virtual void	VerifyInputInformation ()
virtual void	VerifyPreconditions ()
	~ProcessObject ()
DataObject *	GetInput (const DataObjectIdentifierType &key)
const DataObject *	GetInput (const DataObjectIdentifierType &key) const
DataObject *	GetInput (DataObjectPointerArraySizeType)
const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryInput ()
const DataObject *	GetPrimaryInput () const
DataObject *	GetOutput (const DataObjectIdentifierType &key)
const DataObject *	GetOutput (const DataObjectIdentifierType &key) const
DataObject *	GetOutput (DataObjectPointerArraySizeType idx)
const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryOutput ()
const DataObject *	GetPrimaryOutput () const
virtual void	PushBackInput (const DataObject *input)
virtual void	PopBackInput ()
virtual void	PushFrontInput (const DataObject *input)
virtual void	PopFrontInput ()
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
virtual	~Object ()
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Protected Attributes
CompositeTransformPointer	m_CompositeTransform
RealType	m_CurrentConvergenceValue
SizeValueType	m_CurrentIteration
SizeValueType	m_CurrentLevel
RealType	m_CurrentMetricValue
InitialTransformPointer	m_FixedInitialTransform
FixedInterpolatorPointer	m_FixedInterpolator
FixedImagePointer	m_FixedSmoothImage
bool	m_IsConverged
MetricPointer	m_Metric
MetricSamplingPercentageArrayType	m_MetricSamplingPercentagePerLevel
MetricSamplingStrategyType	m_MetricSamplingStrategy
InitialTransformPointer	m_MovingInitialTransform
MovingInterpolatorPointer	m_MovingInterpolator
MovingImagePointer	m_MovingSmoothImage
SizeValueType	m_NumberOfLevels
OptimizerPointer	m_Optimizer
OutputTransformPointer	m_OutputTransform
ShrinkFactorsArrayType	m_ShrinkFactorsPerLevel
SmoothingSigmasArrayType	m_SmoothingSigmasPerLevel
TransformParametersAdaptorsContainerType	m_TransformParametersAdaptorsPerLevel
Protected Attributes inherited from itk::ProcessObject
bool	m_Updating
TimeStamp	m_OutputInformationMTime

Private Member Functions
	ImageRegistrationMethodv4 (const Self &)
void	operator= (const Self &)

---

Detailed Description

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>
class itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >

Interface method for the current registration framework.

This interface method class encapsulates typical registration usage by incorporating all the necessary elements for performing a simple image registration between two images. This method also allows for multistage registration whereby each stage is characterize by possibly different transforms of and different image metrics. For example, many users will want to perform a linear registration followed by deformable registration where both stages are performed in multiple levels. Each level can be characterized by:

• the resolution of the virtual domain image (see below)
• smoothing of the fixed and moving images
• the coarseness of the current transform via transform adaptors (see below)

Multiple stages are handled by linking multiple instantiations of this class where the output transform is added to the optional composite transform input.

Transform adaptors: To accommodate new changes to the current ITK registration framework, we introduced the concept of transform adaptors. Whereas each stage is associated with a moving and, possibly, fixed transform, each level of each stage is defined by a transform adaptor which describes how to adapt the transform to the current level. For example, if one were to use the B-spline transform during a deformable registration stage, common practice is to increase the resolution of the B-spline mesh (or, analogously, the control point grid size) at each level. At each level, one would define the parameters of the B-spline transform adaptor at that level which increases the resolution from the previous level. For many transforms, such as affine, this concept of an adaptor may be nonsensical. For this reason, the base transform adaptor class does not do anything to the transform but merely passes it through. Each level of each stage must define a transform adaptor but, by default, the base adaptor class is assigned which, again, does not do anything to the transform. A special mention should be made of the transform adaptor at level 0 of any stage. Most likely, the user will not want to do anything to the transform as it enters into the given stage so typical use will be to assign the base adaptor class to level 0 of all stages but we leave that open to the user.

Output: The output is the updated transform which has been added to the composite transform.

Author:

Nick Tustison

Brian Avants

Definition at line 90 of file itkImageRegistrationMethodv4.h.

---

Member Typedef Documentation

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef CompositeTransformType::Pointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::CompositeTransformPointer

Definition at line 129 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef CompositeTransform<RealType, ImageDimension> itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::CompositeTransformType

Reimplemented in itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 128 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef SmartPointer<const Self> itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::ConstPointer

Reimplemented from itk::ProcessObject.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 98 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef ProcessObject::DataObjectPointerArraySizeType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::DataObjectPointerArraySizeType

Make a DataObject of the correct type to be used as the specified output.

Reimplemented from itk::ProcessObject.

Definition at line 254 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef DecoratedOutputTransformType::Pointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::DecoratedOutputTransformPointer

Reimplemented in itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 136 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef DataObjectDecorator<OutputTransformType> itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::DecoratedOutputTransformType

Type for the output: Using Decorator pattern for enabling the transform to be passed in the data pipeline

Reimplemented in itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 135 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef OutputTransformType::DerivativeType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::DerivativeType

Reimplemented in itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 122 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef DerivativeType::ValueType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::DerivativeValueType

Reimplemented in itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 123 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef FixedImageType::Pointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::FixedImagePointer

Reimplemented in itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 111 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef TFixedImage itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::FixedImageType

Input typedefs for the images and transforms.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 107 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef FixedInterpolatorType::Pointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::FixedInterpolatorPointer

Definition at line 145 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef InterpolateImageFunction<FixedImageType, RealType> itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::FixedInterpolatorType

Interpolator typedefs

Definition at line 144 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef InitialTransformType::Pointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::InitialTransformPointer

Definition at line 126 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef Transform<RealType, ImageDimension, ImageDimension> itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::InitialTransformType

Definition at line 125 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef MetricType::Pointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::MetricPointer

Reimplemented in itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 117 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef MetricType::FixedSampledPointSetType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::MetricSamplePointSetType

Definition at line 161 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef Array<RealType> itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::MetricSamplingPercentageArrayType

Definition at line 141 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef ImageToImageMetricv4<FixedImageType, MovingImageType> itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::MetricType

Metric and transform typedefs

Reimplemented in itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 116 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef MovingImageType::Pointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::MovingImagePointer

Reimplemented in itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 113 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef TMovingImage itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::MovingImageType

Reimplemented in itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 112 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef MovingInterpolatorType::Pointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::MovingInterpolatorPointer

Definition at line 147 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef InterpolateImageFunction<MovingImageType, RealType> itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::MovingInterpolatorType

Definition at line 146 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef OptimizerType::Pointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::OptimizerPointer

Definition at line 156 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef ObjectToObjectOptimizerBase itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::OptimizerType

Type of the optimizer.

Definition at line 155 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef OutputTransformType::Pointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::OutputTransformPointer

Reimplemented in itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 120 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef TOutputTransform itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::OutputTransformType

Reimplemented in itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 119 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef SmartPointer<Self> itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::Pointer

Reimplemented from itk::ProcessObject.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 97 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef OutputTransformType::ScalarType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::RealType

Reimplemented in itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 121 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef ImageRegistrationMethodv4 itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::Self

Standard class typedefs.

Reimplemented from itk::ProcessObject.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 95 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef Array<SizeValueType> itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::ShrinkFactorsArrayType

array typedef

Definition at line 139 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef Array<RealType> itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SmoothingSigmasArrayType

Definition at line 140 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef ProcessObject itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::Superclass

Reimplemented from itk::ProcessObject.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 96 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef TransformParametersAdaptorType::Pointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::TransformParametersAdaptorPointer

Definition at line 151 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef std::vector<TransformParametersAdaptorPointer> itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::TransformParametersAdaptorsContainerType

Definition at line 152 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

typedef TransformParametersAdaptor<OutputTransformType> itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::TransformParametersAdaptorType

Transform adaptor typedefs

Definition at line 150 of file itkImageRegistrationMethodv4.h.

---

Member Enumeration Documentation

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

enum itk::ImageRegistrationMethodv4::MetricSamplingStrategyType

enum type for metric sampling strategy

Enumerator:

NONE
REGULAR
RANDOM

Definition at line 159 of file itkImageRegistrationMethodv4.h.

---

Constructor & Destructor Documentation

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::ImageRegistrationMethodv4 ( )

protected

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::~ImageRegistrationMethodv4 ( )

protectedvirtual

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::ImageRegistrationMethodv4 ( const Self &  )

private

---

Member Function Documentation

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual::itk::LightObject::Pointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::CreateAnother ( void  ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GenerateData ( )

protectedvirtual

Perform the registration.

Reimplemented from itk::ProcessObject.

Reimplemented in itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual const RealType& itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetCurrentConvergenceValue ( )

virtual

Get the current convergence value. This is a helper function for reporting observations.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual const SizeValueType& itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetCurrentIteration ( )

virtual

Get the current iteration. This is a helper function for reporting observations.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual SizeValueType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetCurrentLevel ( ) const

virtual

Get the current level. This is a helper function for reporting observations.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual const RealType& itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetCurrentMetricValue ( )

virtual

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual const FixedImageType* itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetFixedImage ( ) const

virtual

Set/Get the fixed image.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual const InitialTransformType* itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetFixedInitialTransform ( )

virtual

Set/Get the initial fixed transform.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual const FixedInterpolatorType* itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetFixedInterpolator ( )

virtual

Set/Get the fixed interpolator.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual const bool& itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetIsConverged ( )

virtual

Get the current convergence state per level. This is a helper function for reporting observations.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual MetricType* itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetMetric ( )

virtual

Set/Get the metric.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual MetricSamplingPercentageArrayType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetMetricSamplingPercentagePerLevel ( ) const

virtual

Set the metric sampling percentage.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual MetricSamplingStrategyType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetMetricSamplingStrategy ( ) const

virtual

Set/Get the metric sampling strategy.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual const MovingImageType* itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetMovingImage ( ) const

virtual

Set/Get the moving image.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual const InitialTransformType* itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetMovingInitialTransform ( )

virtual

Set/Get the initial moving transform.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual const MovingInterpolatorType* itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetMovingInterpolator ( )

virtual

Set/Get the moving interpolator.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual const char* itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::ProcessObject.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual SizeValueType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetNumberOfLevels ( ) const

virtual

Set/Get the number of multi-resolution levels. In setting the number of levels we need to set the following for each level:

• shrink factors for the virtual domain
• sigma smoothing parameter
• transform adaptor with specific parameters for the specified level

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual OptimizerType* itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetOptimizer ( )

virtual

Set/Get the optimizer.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual const DecoratedOutputTransformType* itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetOutput ( ) const

virtual

Returns the transform resulting from the registration process

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual ShrinkFactorsArrayType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetShrinkFactorsPerLevel ( ) const

virtual

Set/Get the shrink factors for each level. At each resolution level, the itkShrinkImageFilter is called. For a 256x256 image, a shrink factor of 2 reduces the image to 128x128.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual SmoothingSigmasArrayType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetSmoothingSigmasPerLevel ( ) const

virtual

Set/Get the smoothing sigmas for each level. At each resolution level, a gaussian smoothing filter (specifically, the itkDiscreteGaussianImageFilter) is applied. Sigma values are specified in physical units.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

const TransformParametersAdaptorsContainerType& itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetTransformParametersAdaptorsPerLevel

(

)

const

Set/Get the transform adaptors.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::InitializeRegistrationAtEachLevel ( const SizeValueType  )

protectedvirtual

Initialize by setting the interconnects between the components.

Reimplemented in itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual DataObjectPointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::MakeOutput ( DataObjectPointerArraySizeType  idx )

virtual

Make a DataObject of the correct type to used as the specified output. Every ProcessObject subclass must be able to create a DataObject that can be used as a specified output. This method is automatically called when DataObject::DisconnectPipeline() is called. DataObject::DisconnectPipeline, disconnects a data object from being an output of its current source. When the data object is disconnected, the ProcessObject needs to construct a replacement output data object so that the ProcessObject is in a valid state. So DataObject::DisconnectPipeline eventually calls ProcessObject::MakeOutput. Note that MakeOutput always returns a itkSmartPointer to a DataObject. ImageSource and MeshSource override this method to create the correct type of image and mesh respectively. If a filter has multiple outputs of different types, then that filter must provide an implementation of MakeOutput().

Reimplemented from itk::ProcessObject.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

static Pointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::New ( )

static

Method for creation through the object factory.

Reimplemented from itk::Object.

Reimplemented in itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::operator= ( const Self &  )

private

Time when GenerateOutputInformation was last called.

Reimplemented from itk::ProcessObject.

Reimplemented in itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ProcessObject.

Reimplemented in itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetFixedImage ( const FixedImageType *  input )

virtual

Set/Get the fixed image.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetFixedInitialTransform ( InitialTransformType *  _arg )

virtual

Set/Get the initial fixed transform.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetFixedInterpolator ( FixedInterpolatorType *  _arg )

virtual

Set/Get the fixed interpolator.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetMetric ( MetricType *  _arg )

virtual

Set/Get the metric.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetMetricSamplePoints ( )

protectedvirtual

Get metric samples.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetMetricSamplingPercentage

(

const RealType

)

Set the metric sampling percentage.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetMetricSamplingPercentagePerLevel ( MetricSamplingPercentageArrayType  _arg )

virtual

Set the metric sampling percentage.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetMetricSamplingStrategy ( MetricSamplingStrategyType  _arg )

virtual

Set/Get the metric sampling strategy.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetMovingImage ( const MovingImageType *  input )

virtual

Set/Get the moving image.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetMovingInitialTransform ( InitialTransformType *  _arg )

virtual

Set/Get the initial moving transform.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetMovingInterpolator ( MovingInterpolatorType *  _arg )

virtual

Set/Get the moving interpolator.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetNumberOfLevels

(

const SizeValueType

)

Set/Get the number of multi-resolution levels. In setting the number of levels we need to set the following for each level:

• shrink factors for the virtual domain
• sigma smoothing parameter
• transform adaptor with specific parameters for the specified level

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetOptimizer ( OptimizerType *  _arg )

virtual

Set/Get the optimizer.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetShrinkFactorsPerLevel ( ShrinkFactorsArrayType  _arg )

virtual

Set/Get the shrink factors for each level. At each resolution level, the itkShrinkImageFilter is called. For a 256x256 image, a shrink factor of 2 reduces the image to 128x128.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

virtual void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetSmoothingSigmasPerLevel ( SmoothingSigmasArrayType  _arg )

virtual

Set/Get the smoothing sigmas for each level. At each resolution level, a gaussian smoothing filter (specifically, the itkDiscreteGaussianImageFilter) is applied. Sigma values are specified in physical units.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetTransformParametersAdaptorsPerLevel

(

TransformParametersAdaptorsContainerType &

)

Set/Get the transform adaptors.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

void itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::StartRegistration ( void  )

inline

Method that initiates the registration

Definition at line 251 of file itkImageRegistrationMethodv4.h.

---

Member Data Documentation

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

const unsigned int itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::ImageDimension = TFixedImage::ImageDimension

static

ImageDimension constants

Reimplemented in itk::TimeVaryingBSplineVelocityFieldImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >, itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >, and itk::BSplineSyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform >.

Definition at line 104 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

CompositeTransformPointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_CompositeTransform

protected

Definition at line 317 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

RealType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_CurrentConvergenceValue

protected

Definition at line 294 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

SizeValueType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_CurrentIteration

protected

Definition at line 292 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

SizeValueType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_CurrentLevel

protected

Definition at line 290 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

RealType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_CurrentMetricValue

protected

Definition at line 293 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

InitialTransformPointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_FixedInitialTransform

protected

Definition at line 301 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

FixedInterpolatorPointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_FixedInterpolator

protected

Definition at line 303 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

FixedImagePointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_FixedSmoothImage

protected

Definition at line 298 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

bool itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_IsConverged

protected

Definition at line 295 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

MetricPointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_Metric

protected

Definition at line 308 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

MetricSamplingPercentageArrayType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_MetricSamplingPercentagePerLevel

protected

Definition at line 310 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

MetricSamplingStrategyType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_MetricSamplingStrategy

protected

Definition at line 309 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

InitialTransformPointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_MovingInitialTransform

protected

Definition at line 300 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

MovingInterpolatorPointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_MovingInterpolator

protected

Definition at line 304 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

MovingImagePointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_MovingSmoothImage

protected

Definition at line 297 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

SizeValueType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_NumberOfLevels

protected

Definition at line 291 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

OptimizerPointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_Optimizer

protected

Definition at line 306 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

OutputTransformPointer itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_OutputTransform

protected

Definition at line 319 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

ShrinkFactorsArrayType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_ShrinkFactorsPerLevel

protected

Definition at line 312 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

SmoothingSigmasArrayType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_SmoothingSigmasPerLevel

protected

Definition at line 313 of file itkImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = AffineTransform<double, GetImageDimension<TFixedImage>::ImageDimension>>

TransformParametersAdaptorsContainerType itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_TransformParametersAdaptorsPerLevel

protected

Definition at line 315 of file itkImageRegistrationMethodv4.h.

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The documentation for this class was generated from the following file:

• itkImageRegistrationMethodv4.h