itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType > Class Template Reference

#include <itkShapePriorSegmentationLevelSetImageFilter.h>

Inheritance diagram for itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >:

Collaboration diagram for itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >:

List of all members.

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef CostFunctionType::Pointer	CostFunctionPointer
typedef ShapePriorMAPCostFunctionBase < TFeatureImage, TOutputPixelType >	CostFunctionType
typedef Superclass::FeatureImageType	FeatureImageType
typedef NodeContainerType::Pointer	NodeContainerPointer
typedef CostFunctionType::NodeContainerType	NodeContainerType
typedef CostFunctionType::NodeType	NodeType
typedef OptimizerType::Pointer	OptimizerPointer
typedef SingleValuedNonLinearOptimizer	OptimizerType
typedef Superclass::OutputImageType	OutputImageType
typedef TOutputPixelType	OutputPixelType
typedef CostFunctionType::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef ShapePriorSegmentationLevelSetImageFilter	Self
typedef ShapeFunctionType::Pointer	ShapeFunctionPointer
typedef ShapePriorSegmentationFunctionType::ShapeFunctionType	ShapeFunctionType
typedef ShapePriorSegmentationLevelSetFunction < OutputImageType, FeatureImageType >	ShapePriorSegmentationFunctionType
typedef SegmentationLevelSetImageFilter < TInputImage, TFeatureImage, TOutputPixelType >	Superclass
typedef Superclass::ValueType	ValueType
Public Types inherited from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
typedef Superclass::IndexType	IndexType
typedef Superclass::InputImageType	InputImageType
typedef SegmentationLevelSetFunction < OutputImageType, FeatureImageType >	SegmentationFunctionType
typedef SegmentationFunctionType::ImageType	SpeedImageType
typedef Superclass::TimeStepType	TimeStepType
typedef SegmentationFunctionType::VectorImageType	VectorImageType
Public Types inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >
typedef std::vector < LayerPointerType >	LayerListType
typedef ObjectStore < LayerNodeType >	LayerNodeStorageType
typedef SparseFieldLevelSetNode < IndexType >	LayerNodeType
typedef LayerType::Pointer	LayerPointerType
typedef SparseFieldLayer < LayerNodeType >	LayerType
typedef Superclass::NeighborhoodScalesType	NeighborhoodScalesType
typedef Superclass::RadiusType	RadiusType
typedef Image< StatusType, itkGetStaticConstMacro(ImageDimension) >	StatusImageType
typedef signed char	StatusType
typedef std::vector< ValueType >	UpdateBufferType
Public Types inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >
typedef FiniteDifferenceFunction < Image< TOutputPixelType,::itk::GetImageDimension < TInputImage > ::ImageDimension > >	FiniteDifferenceFunctionType
typedef TInputImage::PixelType	InputPixelType
typedef NumericTraits < InputPixelType >::ValueType	InputPixelValueType
typedef NumericTraits < OutputPixelType >::ValueType	OutputPixelValueType
typedef OutputPixelType	PixelType
Public Types inherited from itk::InPlaceImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputImageType::PixelType	InputImagePixelType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::RegionType	InputImageRegionType
typedef Superclass::OutputImagePixelType	OutputImagePixelType
typedef Superclass::OutputImagePointer	OutputImagePointer
typedef Superclass::OutputImageRegionType	OutputImageRegionType
Public Types inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >
Public Types inherited from itk::ImageSource< Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >
typedef Superclass::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef Superclass::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType
Public Types inherited from itk::ProcessObject
typedef std::vector < DataObjectPointer >	DataObjectPointerArray
typedef std::vector < DataObjectIdentifierType >	NameArray
Public Types inherited from itk::Object
Public Types inherited from itk::LightObject

Public Member Functions
virtual const char *	GetNameOfClass () const
virtual ShapeFunctionType *	GetShapeFunction ()
ValueType	GetShapePriorScaling () const
virtual ShapePriorSegmentationFunctionType *	GetShapePriorSegmentationFunction ()
virtual void	SetShapeFunction (ShapeFunctionType *s)
virtual void	SetShapePriorSegmentationFunction (ShapePriorSegmentationFunctionType *s)
virtual void	SetCostFunction (CostFunctionType *_arg)
virtual CostFunctionType *	GetCostFunction ()
virtual void	SetOptimizer (OptimizerType *_arg)
virtual OptimizerType *	GetOptimizer ()
virtual void	SetInitialParameters (ParametersType _arg)
virtual ParametersType	GetInitialParameters () const
void	SetShapePriorScaling (ValueType v)
Public Member Functions inherited from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
void	GenerateAdvectionImage ()
void	GenerateSpeedImage ()
virtual const VectorImageType *	GetAdvectionImage () const
ValueType	GetAdvectionScaling () const
ValueType	GetCurvatureScaling () const
virtual FeatureImageType *	GetFeatureImage ()
double	GetMaximumCurvatureTimeStep () const
unsigned int	GetMaximumIterations ()
double	GetMaximumPropagationTimeStep () const
ValueType	GetPropagationScaling () const
virtual SegmentationFunctionType *	GetSegmentationFunction ()
virtual const SpeedImageType *	GetSpeedImage () const
bool	GetUseMinimalCurvature () const
bool	GetUseNegativeFeatures () const
void	SetAdvectionImage (VectorImageType *v)
virtual void	SetInitialImage (InputImageType *f)
void	SetInput2 (const FeatureImageType *input)
virtual void	SetSegmentationFunction (SegmentationFunctionType *s)
void	SetSpeedImage (SpeedImageType *s)
void	SetUseNegativeFeaturesOff ()
	typedef (Concept::HasNumericTraits< TOutputPixelType >) OutputHasNumericTraitsCheck
void	UseMinimalCurvatureOff ()
void	UseMinimalCurvatureOn ()
void	SetMaximumIterations (unsigned int i)
virtual void	SetFeatureImage (const FeatureImageType *f)
void	SetUseNegativeFeaturesOn ()
void	SetUseNegativeFeatures (bool u)
virtual void	SetReverseExpansionDirection (bool _arg)
virtual bool	GetReverseExpansionDirection () const
virtual void	ReverseExpansionDirectionOn ()
virtual void	ReverseExpansionDirectionOff ()
virtual void	SetAutoGenerateSpeedAdvection (bool _arg)
virtual bool	GetAutoGenerateSpeedAdvection () const
virtual void	AutoGenerateSpeedAdvectionOn ()
virtual void	AutoGenerateSpeedAdvectionOff ()
void	SetFeatureScaling (ValueType v)
void	SetPropagationScaling (ValueType v)
void	SetAdvectionScaling (ValueType v)
void	SetCurvatureScaling (ValueType v)
void	SetUseMinimalCurvature (bool b)
void	SetMaximumCurvatureTimeStep (double n)
void	SetMaximumPropagationTimeStep (double n)
Public Member Functions inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
	typedef (Concept::EqualityComparable< typename Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension >::PixelType >) OutputEqualityComparableCheck
	typedef (Concept::Convertible< double, typename Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension >::PixelType >) DoubleConvertibleToOutputCheck
	typedef (Concept::OStreamWritable< typename Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension >::PixelType >) OutputOStreamWritableCheck
virtual void	SetNumberOfLayers (unsigned int _arg)
virtual unsigned int	GetNumberOfLayers () const
virtual void	SetIsoSurfaceValue (ValueType _arg)
virtual ValueType	GetIsoSurfaceValue () const
virtual void	SetInterpolateSurfaceLocation (bool _arg)
virtual bool	GetInterpolateSurfaceLocation () const
void	InterpolateSurfaceLocationOn ()
void	InterpolateSurfaceLocationOff ()
Public Member Functions inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >
virtual const FiniteDifferenceFunctionType::Pointer &	GetDifferenceFunction () const
virtual const IdentifierType &	GetElapsedIterations ()
virtual bool	GetIsInitialized ()
virtual void	SetDifferenceFunction (FiniteDifferenceFunctionType *_arg)
virtual void	SetIsInitialized (bool _arg)
void	SetStateToInitialized ()
void	SetStateToUninitialized ()
virtual void	SetNumberOfIterations (IdentifierType _arg)
virtual const IdentifierType &	GetNumberOfIterations ()
virtual void	SetUseImageSpacing (bool _arg)
virtual void	UseImageSpacingOn ()
virtual void	UseImageSpacingOff ()
virtual const bool &	GetUseImageSpacing ()
virtual void	SetMaximumRMSError (double _arg)
virtual const double &	GetMaximumRMSError ()
virtual void	SetRMSChange (double _arg)
virtual const double &	GetRMSChange ()
virtual void	SetManualReinitialization (bool _arg)
virtual const bool &	GetManualReinitialization ()
virtual void	ManualReinitializationOn ()
virtual void	ManualReinitializationOff ()
Public Member Functions inherited from itk::InPlaceImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >
virtual bool	CanRunInPlace () const
virtual void	SetInPlace (bool _arg)
virtual bool	GetInPlace () const
virtual void	InPlaceOn ()
virtual void	InPlaceOff ()
Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >
const InputImageType *	GetInput (void) const
const InputImageType *	GetInput (unsigned int idx) const
virtual void	PopBackInput ()
virtual void	PopFrontInput ()
virtual void	PushBackInput (const InputImageType *image)
virtual void	PushFrontInput (const InputImageType *image)
virtual void	SetInput (const InputImageType *image)
virtual void	SetInput (unsigned int, const TInputImage *image)
Public Member Functions inherited from itk::ImageSource< Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >
OutputImageType *	GetOutput (unsigned int idx)
virtual void	GraftNthOutput (unsigned int idx, DataObject *output)
virtual void	GraftOutput (DataObject *output)
virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
OutputImageType *	GetOutput (void)
const OutputImageType *	GetOutput (void) const
virtual ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx)
Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual void	EnlargeOutputRequestedRegion (DataObject *)
virtual const bool &	GetAbortGenerateData ()
NameArray	GetInputNames () const
MultiThreader *	GetMultiThreader () const
DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
NameArray	GetOutputNames () const
virtual const float &	GetProgress ()
NameArray	GetRequiredInputNames () const
bool	HasInput (const DataObjectIdentifierType &key) const
bool	HasOutput (const DataObjectIdentifierType &key) const
virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)
virtual void	PrepareOutputs ()
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	ResetPipeline ()
virtual void	SetAbortGenerateData (bool _arg)
virtual void	SetProgress (float _arg)
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float amount)
DataObjectPointerArray	GetInputs ()
DataObjectPointerArray	GetOutputs ()
DataObjectPointerArray	GetIndexedInputs ()
DataObjectPointerArray	GetIndexedOutputs ()
DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const
virtual void	SetReleaseDataFlag (bool flag)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool &	GetReleaseDataBeforeUpdateFlag ()
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	SetNumberOfThreads (ThreadIdType _arg)
virtual const ThreadIdType &	GetNumberOfThreads ()
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary (void)
const MetaDataDictionary &	GetMetaDataDictionary (void) const
virtual unsigned long	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	Register () const
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int)
virtual void	UnRegister () const
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const

Static Public Attributes
static const unsigned int	ImageDimension = TInputImage::ImageDimension

Protected Member Functions
void	ExtractActiveRegion (NodeContainerType *ptr)
void	GenerateData ()
virtual void	InitializeIteration ()
virtual void	PrintSelf (std::ostream &os, Indent indent) const
Protected Member Functions inherited from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
	SegmentationLevelSetImageFilter ()
virtual	~SegmentationLevelSetImageFilter ()
Protected Member Functions inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >
void	AllocateUpdateBuffer ()
void	ApplyUpdate (const TimeStepType &dt)
TimeStepType	CalculateChange ()
virtual ValueType	CalculateUpdateValue (const IndexType &, const TimeStepType &dt, const ValueType &value, const ValueType &change)
void	ConstructActiveLayer ()
void	ConstructLayer (StatusType from, StatusType to)
void	CopyInputToOutput ()
virtual ValueType	GetValueOne () const
virtual ValueType	GetValueZero () const
void	Initialize ()
void	InitializeActiveLayerValues ()
virtual void	InitializeBackgroundPixels ()
virtual void	PostProcessOutput ()
void	ProcessOutsideList (LayerType *OutsideList, StatusType ChangeToStatus)
void	ProcessStatusList (LayerType *InputList, LayerType *OutputList, StatusType ChangeToStatus, StatusType SearchForStatus)
void	PropagateAllLayerValues ()
void	PropagateLayerValues (StatusType from, StatusType to, StatusType promote, int InOrOut)
void	UpdateActiveLayerValues (TimeStepType dt, LayerType *StatusUpList, LayerType *StatusDownList)
	SparseFieldLevelSetImageFilter ()
	~SparseFieldLevelSetImageFilter ()
Protected Member Functions inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >
	FiniteDifferenceImageFilter ()
virtual void	GenerateInputRequestedRegion ()
virtual bool	Halt ()
virtual TimeStepType	ResolveTimeStep (const std::vector< TimeStepType > &timeStepList, const std::vector< bool > &valid) const
virtual void	SetElapsedIterations (IdentifierType _arg)
virtual bool	ThreadedHalt (void *)
virtual	~FiniteDifferenceImageFilter ()
Protected Member Functions inherited from itk::InPlaceImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >
virtual void	AllocateOutputs ()
virtual bool	GetRunningInPlace () const
	InPlaceImageFilter ()
virtual void	ReleaseInputs ()
	~InPlaceImageFilter ()
Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
	ImageToImageFilter ()
virtual void	VerifyInputInformation ()
	~ImageToImageFilter ()
void	PushBackInput (const DataObject *input)
void	PushFrontInput (const DataObject *input)
Protected Member Functions inherited from itk::ImageSource< Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >
virtual void	AfterThreadedGenerateData ()
virtual void	BeforeThreadedGenerateData ()
	ImageSource ()
virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
virtual	~ImageSource ()
Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)
virtual void	AddOutput (DataObject *output)
bool	AddRequiredInputName (const DataObjectIdentifierType &)
virtual void	CacheInputReleaseDataFlags ()
virtual void	GenerateOutputInformation ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs ()
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs ()
bool	IsIndexedName (const DataObjectIdentifierType &) const
bool	IsRequiredInputName (const DataObjectIdentifierType &) const
	itkLegacyMacro (virtual void RemoveInput(DataObject *input))
	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
DataObjectPointerArraySizeType	MakeIndexFromName (const DataObjectIdentifierType &) const
DataObjectIdentifierType	MakeNameFromIndex (DataObjectPointerArraySizeType) const
	ProcessObject ()
virtual void	PropagateResetPipeline ()
virtual void	RemoveInput (const DataObjectIdentifierType &key)
virtual void	RemoveInput (DataObjectPointerArraySizeType)
virtual void	RemoveOutput (const DataObjectIdentifierType &key)
virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)
bool	RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void	RestoreInputReleaseDataFlags ()
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void	SetPrimaryInput (DataObject *input)
virtual void	SetPrimaryOutput (DataObject *output)
void	SetRequiredInputNames (const NameArray &)
virtual void	VerifyPreconditions ()
	~ProcessObject ()
DataObject *	GetInput (const DataObjectIdentifierType &key)
const DataObject *	GetInput (const DataObjectIdentifierType &key) const
DataObject *	GetInput (DataObjectPointerArraySizeType)
const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryInput ()
const DataObject *	GetPrimaryInput () const
DataObject *	GetOutput (const DataObjectIdentifierType &key)
const DataObject *	GetOutput (const DataObjectIdentifierType &key) const
DataObject *	GetOutput (DataObjectPointerArraySizeType idx)
const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryOutput ()
const DataObject *	GetPrimaryOutput () const
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
virtual	~Object ()
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Private Member Functions
void	operator= (const Self &)
	ShapePriorSegmentationLevelSetImageFilter (const Self &)

Private Attributes
CostFunctionPointer	m_CostFunction
ParametersType	m_CurrentParameters
ParametersType	m_InitialParameters
OptimizerPointer	m_Optimizer
ShapeFunctionPointer	m_ShapeFunction
ShapePriorSegmentationFunctionType *	m_ShapePriorSegmentationFunction
virtual const ParametersType &	GetCurrentParameters ()
virtual	~ShapePriorSegmentationLevelSetImageFilter ()
	ShapePriorSegmentationLevelSetImageFilter ()

Additional Inherited Members
Protected Attributes inherited from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
bool	m_ReverseExpansionDirection
bool	m_AutoGenerateSpeedAdvection
Protected Attributes inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >
double	m_ConstantGradientValue
ValueType	m_IsoSurfaceValue
LayerNodeStorageType::Pointer	m_LayerNodeStore
LayerListType	m_Layers
SparseFieldCityBlockNeighborList < NeighborhoodIterator < OutputImageType > >	m_NeighborList
unsigned int	m_NumberOfLayers
OutputImageType::Pointer	m_ShiftedImage
StatusImageType::Pointer	m_StatusImage
UpdateBufferType	m_UpdateBuffer
bool	m_InterpolateSurfaceLocation
Protected Attributes inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >
IdentifierType	m_ElapsedIterations
bool	m_IsInitialized
bool	m_ManualReinitialization
double	m_MaximumRMSError
IdentifierType	m_NumberOfIterations
double	m_RMSChange

---

Detailed Description

template<class TInputImage, class TFeatureImage, class TOutputPixelType = float>
class itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >

A base class which defines the API for implementing a level set segmentation filter with statistical shape influence.

OVERVIEW

This class extends the functionality of SegmentationLevelSetImageFilter with an additional statistical shape influence term in the level set evolution as developed in [1].

TEMPLATE PARAMETERS

There are two required and one optional template parameter for these filters.

TInputImage is the image type of the initial model you will input to the filter using SetInput() or SetInitialImage().

TFeatureImage is the image type of the image from which the filter will calculate the speed term for segmentation (see INPUTS).

TOutputPixelType is the data type used for the output image phi, the implicit level set image. This should really only ever be set as float (default) or double.

PARAMETERS

From a level set evolution point of view, the shape is represented by a signed distance function from the shape encapsulated in a ShapeSignedDistanceFunction object.

See also:

ShapeSignedDistanceFunction

ShapePriorSegmentationLevelSetFunction

REFERENCES

[1] Leventon, M.E. et al. "Statistical Shape Influence in Geodesic Active Contours", CVPR 2000.

Definition at line 74 of file itkShapePriorSegmentationLevelSetImageFilter.h.

---

Member Typedef Documentation

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef SmartPointer< const Self > itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ConstPointer

Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Definition at line 89 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef CostFunctionType::Pointer itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::CostFunctionPointer

Definition at line 112 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef ShapePriorMAPCostFunctionBase< TFeatureImage, TOutputPixelType > itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::CostFunctionType

The type of the MAP estimate cost function.

Definition at line 111 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef Superclass::FeatureImageType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::FeatureImageType

Local image typedefs

Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Definition at line 97 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef NodeContainerType::Pointer itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::NodeContainerPointer

Definition at line 118 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef CostFunctionType::NodeContainerType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::NodeContainerType

Definition at line 117 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef CostFunctionType::NodeType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::NodeType

Type of node used to represent the active region around the zero set.

Definition at line 116 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef OptimizerType::Pointer itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::OptimizerPointer

Definition at line 123 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef SingleValuedNonLinearOptimizer itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::OptimizerType

The type of optimizer used to compute the MAP estimate of the shape and pose parameters.

Definition at line 122 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef Superclass::OutputImageType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::OutputImageType

Output image type typedefs

Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Definition at line 96 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef TOutputPixelType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::OutputPixelType

Type of the output pixel.

Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Definition at line 100 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef CostFunctionType::ParametersType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ParametersType

Definition at line 113 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef SmartPointer< Self > itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::Pointer

Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Definition at line 88 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef ShapePriorSegmentationLevelSetImageFilter itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::Self

Standard class typedefs

Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Definition at line 85 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef ShapeFunctionType::Pointer itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ShapeFunctionPointer

Definition at line 108 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef ShapePriorSegmentationFunctionType::ShapeFunctionType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ShapeFunctionType

The shape signed distance function type.

Definition at line 107 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef ShapePriorSegmentationLevelSetFunction< OutputImageType, FeatureImageType > itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ShapePriorSegmentationFunctionType

The level set function with shape prior type

Definition at line 104 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType > itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::Superclass

Standard class typedefs

Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Definition at line 87 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

typedef Superclass::ValueType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ValueType

Inherited typedef from the superclass.

Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Definition at line 92 of file itkShapePriorSegmentationLevelSetImageFilter.h.

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Constructor & Destructor Documentation

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

virtual itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::~ShapePriorSegmentationLevelSetImageFilter ( )

inlineprotectedvirtual

Get the current parameters.

Definition at line 174 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ShapePriorSegmentationLevelSetImageFilter ( )

protected

Get the current parameters.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ShapePriorSegmentationLevelSetImageFilter ( const Self &  )

private

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Member Function Documentation

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ExtractActiveRegion ( NodeContainerType *  ptr )

protected

Extract node of active region into a NodeContainer

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GenerateData ( )

protectedvirtual

Overridden from ProcessObject to set certain values before starting the finite difference solver and then create an appropriate output

Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

virtual CostFunctionType* itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetCostFunction ( )

virtual

Set/Get the shape prior MAP cost function.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

virtual const ParametersType& itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetCurrentParameters ( )

virtual

Get the current parameters.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

virtual ParametersType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetInitialParameters ( ) const

virtual

Set/Get the initial parameters. These are the initial parameters applied to the ShapeFunction. The user should refer to the documentation of the particular type of ShapeSignedDistanceFunction used to determine the meaning of the parameters.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

virtual const char* itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

virtual OptimizerType* itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetOptimizer ( )

virtual

Set/Get the optimizer.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

virtual ShapeFunctionType* itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetShapeFunction ( )

virtual

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

ValueType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetShapePriorScaling ( ) const

inline

Definition at line 159 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

virtual ShapePriorSegmentationFunctionType* itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetShapePriorSegmentationFunction ( )

inlinevirtual

Definition at line 168 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

virtual void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::InitializeIteration ( )

protectedvirtual

Overrides parent implementation. MAP estimates of the shape and pose parameters is computed in this method.

Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::operator= ( const Self &  )

private

Flag to indicate whether Speed and Advection images are automatically generated when running the filter. Otherwise, a pointer to images must be explicitly set or GenerateSpeedImage() and/or GenerateAdvectionImage() called directly before updating the filter

Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

virtual void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protectedvirtual

End concept checking

Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

virtual void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetCostFunction ( CostFunctionType *  _arg )

virtual

Set/Get the shape prior MAP cost function.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

virtual void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetInitialParameters ( ParametersType  _arg )

virtual

Set/Get the initial parameters. These are the initial parameters applied to the ShapeFunction. The user should refer to the documentation of the particular type of ShapeSignedDistanceFunction used to determine the meaning of the parameters.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

virtual void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetOptimizer ( OptimizerType *  _arg )

virtual

Set/Get the optimizer.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

virtual void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetShapeFunction ( ShapeFunctionType *  s )

virtual

Set/Get the shape signed distance function.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetShapePriorScaling ( ValueType  v )

inline

Set/Get the scaling of the shape prior term.

Definition at line 149 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

virtual void itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetShapePriorSegmentationFunction ( ShapePriorSegmentationFunctionType *  s )

virtual

Set the shape prior segmentation function. In general, this should only be called by a subclass of this object. It is made public to allow itk::Command objects access.

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Member Data Documentation

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

const unsigned int itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ImageDimension = TInputImage::ImageDimension

static

Dimension of the input/level set image.

Reimplemented from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >.

Definition at line 82 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

CostFunctionPointer itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_CostFunction

private

Definition at line 199 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

ParametersType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_CurrentParameters

private

Definition at line 202 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

ParametersType itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_InitialParameters

private

Definition at line 201 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

OptimizerPointer itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_Optimizer

private

Definition at line 200 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

ShapeFunctionPointer itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_ShapeFunction

private

Definition at line 198 of file itkShapePriorSegmentationLevelSetImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputPixelType = float>

ShapePriorSegmentationFunctionType* itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_ShapePriorSegmentationFunction

private

Definition at line 204 of file itkShapePriorSegmentationLevelSetImageFilter.h.

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The documentation for this class was generated from the following file:

• itkShapePriorSegmentationLevelSetImageFilter.h