ITK
4.3.0
Insight Segmentation and Registration Toolkit
|
#include <itkLabelMapContourOverlayImageFilter.h>
Apply a colormap to the contours (outlines) of each object in a label map and superimpose it on top of the feature image.
The feature image is typically the image from which the labeling was produced. Use the SetInput function to set the LabelMap, and the SetFeatureImage function to set the feature image.
Apply a colormap to a label map and put it on top of the input image. The set of colors is a good selection of distinct colors. The opacity of the label map can be defined by the user. A background label produce a gray pixel with the same intensity than the input one.
This implementation was taken from the Insight Journal paper: http://hdl.handle.net/1926/584 or http://www.insight-journal.org/browse/publication/176
Definition at line 57 of file itkLabelMapContourOverlayImageFilter.h.
Public Types | |
enum | { PLAIN = 0, CONTOUR = 1, SLICE_CONTOUR =2 } |
enum | { HIGH_LABEL_ON_TOP = 0, LOW_LABEL_ON_TOP = 1 } |
typedef SmartPointer< const Self > | ConstPointer |
typedef FeatureImageType::ConstPointer | FeatureImageConstPointer |
typedef FeatureImageType::PixelType | FeatureImagePixelType |
typedef FeatureImageType::Pointer | FeatureImagePointer |
typedef FeatureImageType::RegionType | FeatureImageRegionType |
typedef TFeatureImage | FeatureImageType |
typedef Functor::LabelOverlayFunctor < FeatureImagePixelType, LabelMapPixelType, OutputImagePixelType > | FunctorType |
typedef OutputImageType::IndexType | IndexType |
typedef LabelMapType::ConstPointer | LabelMapConstPointer |
typedef LabelMapType::PixelType | LabelMapPixelType |
typedef LabelMapType::Pointer | LabelMapPointer |
typedef LabelMapType::RegionType | LabelMapRegionType |
typedef TLabelMap | LabelMapType |
typedef LabelMapType::LabelObjectType | LabelObjectType |
typedef LabelObjectType::LabelType | LabelType |
typedef OutputImageType::ConstPointer | OutputImageConstPointer |
typedef OutputImageType::PixelType | OutputImagePixelType |
typedef OutputImageType::Pointer | OutputImagePointer |
typedef OutputImageType::RegionType | OutputImageRegionType |
typedef TOutputImage | OutputImageType |
typedef SmartPointer< Self > | Pointer |
typedef OutputImageType::RegionType | RegionType |
typedef LabelMapContourOverlayImageFilter | Self |
typedef OutputImageType::SizeType | SizeType |
typedef LabelMapFilter < TLabelMap, TOutputImage > | Superclass |
Public Types inherited from itk::LabelMapFilter< TLabelMap, TOutputImage > | |
typedef SmartPointer< const Self > | ConstPointer |
typedef InputImageType::ConstPointer | InputImageConstPointer |
typedef InputImageType::PixelType | InputImagePixelType |
typedef InputImageType::Pointer | InputImagePointer |
typedef InputImageType::RegionType | InputImageRegionType |
typedef TLabelMap | InputImageType |
typedef InputImageType::LabelObjectType | LabelObjectType |
typedef OutputImageType::ConstPointer | OutputImageConstPointer |
typedef OutputImageType::PixelType | OutputImagePixelType |
typedef OutputImageType::Pointer | OutputImagePointer |
typedef OutputImageType::RegionType | OutputImageRegionType |
typedef TOutputImage | OutputImageType |
typedef SmartPointer< Self > | Pointer |
typedef LabelMapFilter | Self |
typedef ImageToImageFilter < TLabelMap, TOutputImage > | Superclass |
Public Types inherited from itk::ImageToImageFilter< TLabelMap, TOutputImage > | |
typedef SmartPointer< const Self > | ConstPointer |
typedef InputImageType::ConstPointer | InputImageConstPointer |
typedef InputImageType::PixelType | InputImagePixelType |
typedef InputImageType::Pointer | InputImagePointer |
typedef InputImageType::RegionType | InputImageRegionType |
typedef TLabelMap | InputImageType |
typedef Superclass::OutputImagePixelType | OutputImagePixelType |
typedef Superclass::OutputImageRegionType | OutputImageRegionType |
typedef SmartPointer< Self > | Pointer |
typedef ImageToImageFilter | Self |
typedef ImageSource< TOutputImage > | Superclass |
Public Types inherited from itk::ImageSource< TOutputImage > | |
typedef SmartPointer< const Self > | ConstPointer |
typedef Superclass::DataObjectIdentifierType | DataObjectIdentifierType |
typedef DataObject::Pointer | DataObjectPointer |
typedef Superclass::DataObjectPointerArraySizeType | DataObjectPointerArraySizeType |
typedef OutputImageType::PixelType | OutputImagePixelType |
typedef OutputImageType::Pointer | OutputImagePointer |
typedef OutputImageType::RegionType | OutputImageRegionType |
typedef TOutputImage | OutputImageType |
typedef SmartPointer< Self > | Pointer |
typedef ImageSource | Self |
typedef ProcessObject | Superclass |
Public Types inherited from itk::ProcessObject | |
typedef SmartPointer< const Self > | ConstPointer |
typedef DataObject::DataObjectIdentifierType | DataObjectIdentifierType |
typedef DataObject::Pointer | DataObjectPointer |
typedef std::vector < DataObjectPointer > | DataObjectPointerArray |
typedef DataObjectPointerArray::size_type | DataObjectPointerArraySizeType |
typedef std::vector < DataObjectIdentifierType > | NameArray |
typedef SmartPointer< Self > | Pointer |
typedef ProcessObject | Self |
typedef Object | Superclass |
Public Types inherited from itk::Object | |
typedef SmartPointer< const Self > | ConstPointer |
typedef SmartPointer< Self > | Pointer |
typedef Object | Self |
typedef LightObject | Superclass |
Public Types inherited from itk::LightObject | |
typedef SmartPointer< const Self > | ConstPointer |
typedef SmartPointer< Self > | Pointer |
typedef LightObject | Self |
Static Public Member Functions | |
static Pointer | New () |
Static Public Member Functions inherited from itk::LabelMapFilter< TLabelMap, TOutputImage > | |
static Pointer | New () |
Static Public Attributes | |
static const unsigned int | LabelMapDimension = TLabelMap::ImageDimension |
static const unsigned int | OutputImageDimension = TOutputImage::ImageDimension |
static const unsigned int | ImageDimension = TOutputImage::ImageDimension |
Static Public Attributes inherited from itk::LabelMapFilter< TLabelMap, TOutputImage > | |
static const unsigned int | InputImageDimension |
static const unsigned int | OutputImageDimension |
Static Public Attributes inherited from itk::ImageToImageFilter< TLabelMap, TOutputImage > | |
static const unsigned int | InputImageDimension |
static const unsigned int | OutputImageDimension |
Static Public Attributes inherited from itk::ImageSource< TOutputImage > | |
static const unsigned int | OutputImageDimension = TOutputImage::ImageDimension |
Private Member Functions | |
LabelMapContourOverlayImageFilter (const Self &) | |
void | operator= (const Self &) |
Private Attributes | |
Barrier::Pointer | m_Barrier |
SizeType | m_ContourThickness |
SizeType | m_DilationRadius |
double | m_Opacity |
int | m_Priority |
int | m_SliceDimension |
LabelMapPointer | m_TempImage |
int | m_Type |
Additional Inherited Members | |
Protected Types inherited from itk::ImageToImageFilter< TLabelMap, TOutputImage > | |
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension) > | InputToOutputRegionCopierType |
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) > | OutputToInputRegionCopierType |
Static Protected Member Functions inherited from itk::ImageSource< TOutputImage > | |
static ITK_THREAD_RETURN_TYPE | ThreaderCallback (void *arg) |
Protected Attributes inherited from itk::LabelMapFilter< TLabelMap, TOutputImage > | |
FastMutexLock::Pointer | m_LabelObjectContainerLock |
typedef SmartPointer<const Self> itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::ConstPointer |
Definition at line 65 of file itkLabelMapContourOverlayImageFilter.h.
typedef FeatureImageType::ConstPointer itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FeatureImageConstPointer |
Definition at line 78 of file itkLabelMapContourOverlayImageFilter.h.
typedef FeatureImageType::PixelType itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FeatureImagePixelType |
Definition at line 80 of file itkLabelMapContourOverlayImageFilter.h.
typedef FeatureImageType::Pointer itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FeatureImagePointer |
Definition at line 77 of file itkLabelMapContourOverlayImageFilter.h.
typedef FeatureImageType::RegionType itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FeatureImageRegionType |
Definition at line 79 of file itkLabelMapContourOverlayImageFilter.h.
typedef TFeatureImage itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FeatureImageType |
Definition at line 76 of file itkLabelMapContourOverlayImageFilter.h.
typedef Functor::LabelOverlayFunctor<FeatureImagePixelType, LabelMapPixelType, OutputImagePixelType> itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::FunctorType |
Definition at line 91 of file itkLabelMapContourOverlayImageFilter.h.
typedef OutputImageType::IndexType itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::IndexType |
Definition at line 87 of file itkLabelMapContourOverlayImageFilter.h.
typedef LabelMapType::ConstPointer itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapConstPointer |
Definition at line 70 of file itkLabelMapContourOverlayImageFilter.h.
typedef LabelMapType::PixelType itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapPixelType |
Definition at line 72 of file itkLabelMapContourOverlayImageFilter.h.
typedef LabelMapType::Pointer itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapPointer |
Definition at line 69 of file itkLabelMapContourOverlayImageFilter.h.
typedef LabelMapType::RegionType itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapRegionType |
Definition at line 71 of file itkLabelMapContourOverlayImageFilter.h.
typedef TLabelMap itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelMapType |
Some convenient typedefs.
Definition at line 68 of file itkLabelMapContourOverlayImageFilter.h.
typedef LabelMapType::LabelObjectType itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelObjectType |
Definition at line 73 of file itkLabelMapContourOverlayImageFilter.h.
typedef LabelObjectType::LabelType itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::LabelType |
Definition at line 74 of file itkLabelMapContourOverlayImageFilter.h.
typedef OutputImageType::ConstPointer itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::OutputImageConstPointer |
Definition at line 84 of file itkLabelMapContourOverlayImageFilter.h.
typedef OutputImageType::PixelType itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::OutputImagePixelType |
Definition at line 86 of file itkLabelMapContourOverlayImageFilter.h.
typedef OutputImageType::Pointer itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::OutputImagePointer |
Definition at line 83 of file itkLabelMapContourOverlayImageFilter.h.
typedef OutputImageType::RegionType itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::OutputImageRegionType |
Definition at line 85 of file itkLabelMapContourOverlayImageFilter.h.
typedef TOutputImage itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::OutputImageType |
Definition at line 82 of file itkLabelMapContourOverlayImageFilter.h.
typedef SmartPointer<Self> itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::Pointer |
Definition at line 64 of file itkLabelMapContourOverlayImageFilter.h.
typedef OutputImageType::RegionType itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::RegionType |
Definition at line 89 of file itkLabelMapContourOverlayImageFilter.h.
typedef LabelMapContourOverlayImageFilter itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::Self |
Standard class typedefs.
Definition at line 62 of file itkLabelMapContourOverlayImageFilter.h.
typedef OutputImageType::SizeType itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::SizeType |
Definition at line 88 of file itkLabelMapContourOverlayImageFilter.h.
typedef LabelMapFilter<TLabelMap, TOutputImage> itk::LabelMapContourOverlayImageFilter< TLabelMap, TFeatureImage, TOutputImage >::Superclass |
Definition at line 63 of file itkLabelMapContourOverlayImageFilter.h.
anonymous enum |
Definition at line 102 of file itkLabelMapContourOverlayImageFilter.h.
anonymous enum |
Definition at line 109 of file itkLabelMapContourOverlayImageFilter.h.
|
protected |
|
inlineprotected |
Definition at line 186 of file itkLabelMapContourOverlayImageFilter.h.
|
private |
|
protectedvirtual |
If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.
Reimplemented from itk::LabelMapFilter< TLabelMap, TOutputImage >.
|
virtual |
Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::Object.
|
protectedvirtual |
LabelMapContourOverlayImageFilter will produce the entire output.
Reimplemented from itk::ProcessObject.
|
protectedvirtual |
LabelMapContourOverlayImageFilter needs the entire input be available. Thus, it needs to provide an implementation of GenerateInputRequestedRegion().
Reimplemented from itk::ImageToImageFilter< TLabelMap, TOutputImage >.
|
protectedvirtual |
Generate the information describing the output data. The default implementation of this method will copy information from the input to the output. A filter may override this method if its output will have different information than its input. For instance, a filter that shrinks an image will need to provide an implementation for this method that changes the spacing of the pixels. Such filters should call their superclass' implementation of this method prior to changing the information values they need (i.e. GenerateOutputInformation() should call Superclass::GenerateOutputInformation() prior to changing the information.
Reimplemented from itk::ProcessObject.
|
virtual |
Set/Get the contour thickness - 1 by default.
|
virtual |
Set/Get the object dilation radius - 0 by default.
|
inline |
Get the feature image
Definition at line 130 of file itkLabelMapContourOverlayImageFilter.h.
References itk::ProcessObject::GetInput().
|
inlineprotectedvirtual |
Return the label collection image to use. This method may be overloaded if the label collection image to use is not the input image.
Reimplemented from itk::LabelMapFilter< TLabelMap, TOutputImage >.
Definition at line 206 of file itkLabelMapContourOverlayImageFilter.h.
|
virtual |
Runtime information support.
Reimplemented from itk::LabelMapFilter< TLabelMap, TOutputImage >.
|
virtual |
Set/Get the opacity of the colored label image. The value must be between 0 and 1
|
virtual |
Set/Get the object priority - HIGH_LABEL_ON_TOP by default.
|
virtual |
Set/Get the slice dimension - defaults to image dimension - 1.
|
virtual |
Set/Get the overlay type - CONTOUR is used by default.
|
static |
Standard New method.
|
private |
|
protectedvirtual |
Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from itk::ImageToImageFilter< TLabelMap, TOutputImage >.
|
virtual |
Set/Get the contour thickness - 1 by default.
|
virtual |
Set/Get the object dilation radius - 0 by default.
|
inline |
Set the feature image
Definition at line 123 of file itkLabelMapContourOverlayImageFilter.h.
|
inline |
Set the input image
Definition at line 136 of file itkLabelMapContourOverlayImageFilter.h.
|
inline |
Set the feature image
Definition at line 142 of file itkLabelMapContourOverlayImageFilter.h.
|
virtual |
Set/Get the opacity of the colored label image. The value must be between 0 and 1
|
virtual |
Set/Get the object priority - HIGH_LABEL_ON_TOP by default.
|
virtual |
Set/Get the slice dimension - defaults to image dimension - 1.
|
virtual |
Set/Get the overlay type - CONTOUR is used by default.
|
protectedvirtual |
If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). This superclass will automatically split the output image into a number of pieces, spawn multiple threads, and call ThreadedGenerateData() in each thread. Prior to spawning threads, the BeforeThreadedGenerateData() method is called. After all the threads have completed, the AfterThreadedGenerateData() method is called. If an image processing filter cannot support threading, that filter should provide an implementation of the GenerateData() method instead of providing an implementation of ThreadedGenerateData(). If a filter provides a GenerateData() method as its implementation, then the filter is responsible for allocating the output data. If a filter provides a ThreadedGenerateData() method as its implementation, then the output memory will allocated automatically by this superclass. The ThreadedGenerateData() method should only produce the output specified by "outputThreadRegion" parameter. ThreadedGenerateData() cannot write to any other portion of the output image (as this is responsibility of a different thread).
Reimplemented from itk::LabelMapFilter< TLabelMap, TOutputImage >.
|
protectedvirtual |
|
static |
ImageDimension constants
Definition at line 99 of file itkLabelMapContourOverlayImageFilter.h.
|
static |
ImageDimension constants
Definition at line 95 of file itkLabelMapContourOverlayImageFilter.h.
|
private |
Definition at line 216 of file itkLabelMapContourOverlayImageFilter.h.
|
private |
Definition at line 219 of file itkLabelMapContourOverlayImageFilter.h.
|
private |
Definition at line 220 of file itkLabelMapContourOverlayImageFilter.h.
|
private |
Definition at line 215 of file itkLabelMapContourOverlayImageFilter.h.
|
private |
Definition at line 218 of file itkLabelMapContourOverlayImageFilter.h.
|
private |
Definition at line 221 of file itkLabelMapContourOverlayImageFilter.h.
|
private |
Definition at line 223 of file itkLabelMapContourOverlayImageFilter.h.
|
private |
Definition at line 217 of file itkLabelMapContourOverlayImageFilter.h.
|
static |
ImageDimension constants
Definition at line 97 of file itkLabelMapContourOverlayImageFilter.h.