ITK  4.3.0
Insight Segmentation and Registration Toolkit
Classes | Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Member Functions | Private Member Functions | Private Attributes | List of all members
itk::LabelOverlapMeasuresImageFilter< TLabelImage > Class Template Reference

#include <itkLabelOverlapMeasuresImageFilter.h>

+ Inheritance diagram for itk::LabelOverlapMeasuresImageFilter< TLabelImage >:
+ Collaboration diagram for itk::LabelOverlapMeasuresImageFilter< TLabelImage >:

Detailed Description

template<class TLabelImage>
class itk::LabelOverlapMeasuresImageFilter< TLabelImage >

Computes overlap measures between the set same set of labels of pixels of two images. Background is assumed to be 0.

This code was contributed in the Insight Journal paper: "Introducing Dice, Jaccard, and Other Label Overlap Measures To ITK" by Nicholas J. Tustison, James C. Gee http://hdl.handle.net/10380/3141 http://www.insight-journal.org/browse/publication/707

Author
Nicholas J. Tustison
See Also
LabelOverlapMeasuresImageFilter

Definition at line 45 of file itkLabelOverlapMeasuresImageFilter.h.

Classes

class  LabelSetMeasures
 Metrics stored per label. More...
 

Public Types

typedef SmartPointer< const SelfConstPointer
 
typedef TLabelImage::IndexType IndexType
 
typedef TLabelImage::ConstPointer LabelImageConstPointer
 
typedef TLabelImage::Pointer LabelImagePointer
 
typedef TLabelImage LabelImageType
 
typedef TLabelImage::PixelType LabelType
 
typedef MapType::const_iterator MapConstIterator
 
typedef MapType::iterator MapIterator
 
typedef itksys::hash_map
< LabelType, LabelSetMeasures
MapType
 
typedef SmartPointer< SelfPointer
 
typedef NumericTraits
< LabelType >::RealType 
RealType
 
typedef TLabelImage::RegionType RegionType
 
typedef
LabelOverlapMeasuresImageFilter 
Self
 
typedef TLabelImage::SizeType SizeType
 
typedef ImageToImageFilter
< TLabelImage, TLabelImage > 
Superclass
 
- Public Types inherited from itk::ImageToImageFilter< TLabelImage, TLabelImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
InputImageType::ConstPointer 
InputImageConstPointer
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef TLabelImage InputImageType
 
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
 
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
 
typedef SmartPointer< SelfPointer
 
typedef ImageToImageFilter Self
 
typedef ImageSource< TLabelImage > Superclass
 
- Public Types inherited from itk::ImageSource< TLabelImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef
Superclass::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef TLabelImage OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef ImageSource Self
 
typedef ProcessObject Superclass
 
- Public Types inherited from itk::ProcessObject
typedef SmartPointer< const SelfConstPointer
 
typedef
DataObject::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
 
typedef
DataObjectPointerArray::size_type 
DataObjectPointerArraySizeType
 
typedef std::vector
< DataObjectIdentifierType
NameArray
 
typedef SmartPointer< SelfPointer
 
typedef ProcessObject Self
 
typedef Object Superclass
 
- Public Types inherited from itk::Object
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightObject Self
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
RealType GetFalseNegativeError ()
 
RealType GetFalseNegativeError (LabelType)
 
RealType GetFalsePositiveError ()
 
RealType GetFalsePositiveError (LabelType)
 
MapType GetLabelSetMeasures ()
 
RealType GetMeanOverlap ()
 
RealType GetMeanOverlap (LabelType)
 
virtual const char * GetNameOfClass () const
 
const LabelImageTypeGetSourceImage (void)
 
const LabelImageTypeGetTargetImage (void)
 
RealType GetTargetOverlap (LabelType)
 
RealType GetTotalOverlap ()
 
RealType GetUnionOverlap ()
 
RealType GetUnionOverlap (LabelType)
 
RealType GetVolumeSimilarity ()
 
RealType GetVolumeSimilarity (LabelType)
 
void SetSourceImage (const LabelImageType *image)
 
void SetTargetImage (const LabelImageType *image)
 
 typedef (Concept::HasNumericTraits< LabelType >) Input1HasNumericTraitsCheck
 
RealType GetJaccardCoefficient ()
 
RealType GetJaccardCoefficient (LabelType label)
 
RealType GetDiceCoefficient ()
 
RealType GetDiceCoefficient (LabelType label)
 
- Public Member Functions inherited from itk::ImageToImageFilter< TLabelImage, TLabelImage >
virtual double GetCoordinateTolerance ()
 
const InputImageTypeGetInput (void) const
 
const InputImageTypeGetInput (unsigned int idx) const
 
virtual void PopBackInput ()
 
virtual void PopFrontInput ()
 
virtual void PushBackInput (const InputImageType *image)
 
virtual void PushFrontInput (const InputImageType *image)
 
virtual void SetCoordinateTolerance (double _arg)
 
virtual void SetInput (const InputImageType *image)
 
virtual void SetInput (unsigned int, const TLabelImage *image)
 
virtual void SetDirectionTolerance (double _arg)
 
virtual double GetDirectionTolerance ()
 
- Public Member Functions inherited from itk::ImageSource< TLabelImage >
OutputImageTypeGetOutput (unsigned int idx)
 
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
 
virtual void GraftOutput (DataObject *output)
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
 
OutputImageTypeGetOutput (void)
 
const OutputImageTypeGetOutput (void) const
 
virtual
ProcessObject::DataObjectPointer 
MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx)
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual const bool & GetAbortGenerateData ()
 
NameArray GetInputNames () const
 
MultiThreader * GetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
virtual const float & GetProgress ()
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual DataObjectPointer MakeOutput (const DataObjectIdentifierType &)
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void SetProgress (float _arg)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float amount)
 
DataObjectPointerArray GetInputs ()
 
DataObjectPointerArray GetOutputs ()
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag ()
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfThreads (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfThreads ()
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary (void)
 
const MetaDataDictionaryGetMetaDataDictionary (void) const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int)
 
virtual void UnRegister () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 

Static Public Attributes

static const unsigned int ImageDimension = TLabelImage::ImageDimension
 
- Static Public Attributes inherited from itk::ImageToImageFilter< TLabelImage, TLabelImage >
static const unsigned int InputImageDimension
 
static const unsigned int OutputImageDimension
 
- Static Public Attributes inherited from itk::ImageSource< TLabelImage >
static const unsigned int OutputImageDimension
 

Protected Member Functions

void AfterThreadedGenerateData ()
 
void AllocateOutputs ()
 
void BeforeThreadedGenerateData ()
 
void EnlargeOutputRequestedRegion (DataObject *data)
 
void GenerateInputRequestedRegion ()
 
 LabelOverlapMeasuresImageFilter ()
 
void PrintSelf (std::ostream &os, Indent indent) const
 
void ThreadedGenerateData (const RegionType &, ThreadIdType)
 
 ~LabelOverlapMeasuresImageFilter ()
 
- Protected Member Functions inherited from itk::ImageToImageFilter< TLabelImage, TLabelImage >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
 
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 
virtual void VerifyInputInformation ()
 
void PushBackInput (const DataObject *input)
 
void PushFrontInput (const DataObject *input)
 
 ImageToImageFilter ()
 
 ~ImageToImageFilter ()
 
- Protected Member Functions inherited from itk::ImageSource< TLabelImage >
virtual void GenerateData ()
 
 ImageSource ()
 
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
 
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
 
virtual ~ImageSource ()
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
virtual void AddOutput (DataObject *output)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateOutputInformation ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs ()
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
void SetRequiredInputNames (const NameArray &)
 
virtual void VerifyPreconditions ()
 
 ~ProcessObject ()
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
DataObjectGetInput (DataObjectPointerArraySizeType)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName () const
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName () const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs ()
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object ()
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Member Functions

 LabelOverlapMeasuresImageFilter (const Self &)
 
void operator= (const Self &)
 

Private Attributes

MapType m_LabelSetMeasures
 
std::vector< MapTypem_LabelSetMeasuresPerThread
 

Additional Inherited Members

- Protected Types inherited from itk::ImageToImageFilter< TLabelImage, TLabelImage >
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(OutputImageDimension),
itkGetStaticConstMacro(InputImageDimension) > 
InputToOutputRegionCopierType
 
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(InputImageDimension),
itkGetStaticConstMacro(OutputImageDimension) > 
OutputToInputRegionCopierType
 
- Static Protected Member Functions inherited from itk::ImageSource< TLabelImage >
static ITK_THREAD_RETURN_TYPE ThreaderCallback (void *arg)
 
- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 

Member Typedef Documentation

template<class TLabelImage >
typedef SmartPointer<const Self> itk::LabelOverlapMeasuresImageFilter< TLabelImage >::ConstPointer

Definition at line 53 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
typedef TLabelImage::IndexType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::IndexType

Definition at line 68 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
typedef TLabelImage::ConstPointer itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelImageConstPointer

Definition at line 64 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
typedef TLabelImage::Pointer itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelImagePointer

Definition at line 63 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
typedef TLabelImage itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelImageType

Image related typedefs.

Definition at line 59 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
typedef TLabelImage::PixelType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelType

Definition at line 70 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
typedef MapType::const_iterator itk::LabelOverlapMeasuresImageFilter< TLabelImage >::MapConstIterator

Definition at line 115 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
typedef MapType::iterator itk::LabelOverlapMeasuresImageFilter< TLabelImage >::MapIterator

Definition at line 114 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
typedef itksys::hash_map<LabelType, LabelSetMeasures> itk::LabelOverlapMeasuresImageFilter< TLabelImage >::MapType

Type of the map used to store data per label

Definition at line 113 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
typedef SmartPointer<Self> itk::LabelOverlapMeasuresImageFilter< TLabelImage >::Pointer

Definition at line 52 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
typedef NumericTraits<LabelType>::RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::RealType

Type to use for computations.

Definition at line 73 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
typedef TLabelImage::RegionType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::RegionType

Definition at line 66 of file itkLabelOverlapMeasuresImageFilter.h.

Standard Self typedef

Definition at line 50 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
typedef TLabelImage::SizeType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::SizeType

Definition at line 67 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
typedef ImageToImageFilter<TLabelImage,TLabelImage> itk::LabelOverlapMeasuresImageFilter< TLabelImage >::Superclass

Definition at line 51 of file itkLabelOverlapMeasuresImageFilter.h.

Constructor & Destructor Documentation

template<class TLabelImage >
itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelOverlapMeasuresImageFilter ( )
protected

End concept checking

template<class TLabelImage >
itk::LabelOverlapMeasuresImageFilter< TLabelImage >::~LabelOverlapMeasuresImageFilter ( )
inlineprotected

Definition at line 183 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelOverlapMeasuresImageFilter ( const Self )
private

Member Function Documentation

template<class TLabelImage >
void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::AfterThreadedGenerateData ( void  )
protectedvirtual

If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData(). The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.

Reimplemented from itk::ImageSource< TLabelImage >.

template<class TLabelImage >
void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::AllocateOutputs ( )
protectedvirtual

Pass the input through unmodified. Do this by setting the output to the source this by setting the output to the source image in the AllocateOutputs() method.

Reimplemented from itk::ImageSource< TLabelImage >.

template<class TLabelImage >
void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::BeforeThreadedGenerateData ( void  )
protectedvirtual

If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.

Reimplemented from itk::ImageSource< TLabelImage >.

template<class TLabelImage >
virtual::itk::LightObject::Pointer itk::LabelOverlapMeasuresImageFilter< TLabelImage >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<class TLabelImage >
void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::EnlargeOutputRequestedRegion ( DataObject )
protectedvirtual

Give the process object a chance to indictate that it will produce more output than it was requested to produce. For example, many imaging filters must compute the entire output at once or can only produce output in complete slices. Such filters cannot handle smaller requested regions. These filters must provide an implementation of this method, setting the output requested region to the size they will produce. By default, a process object does not modify the size of the output requested region.

Reimplemented from itk::ProcessObject.

template<class TLabelImage >
void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GenerateInputRequestedRegion ( void  )
protectedvirtual

What is the input requested region that is required to produce the output requested region? The base assumption for image processing filters is that the input requested region can be set to match the output requested region. If a filter requires more input (for instance a filter that uses neighborhoods needs more input than output to avoid introducing artificial boundary conditions) or less input (for instance a magnify filter) will have to override this method. In doing so, it should call its superclass' implementation as its first step. Note that imaging filters operate differently than the classes to this point in the class hierarchy. Up till now, the base assumption has been that the largest possible region will be requested of the input.

This implementation of GenerateInputRequestedRegion() only processes the inputs that are a subclass of the ImageBase<InputImageDimension>. If an input is another type of DataObject (including an Image of a different dimension), they are skipped by this method. The subclasses of ImageToImageFilter are responsible for providing an implementation of GenerateInputRequestedRegion() when there are multiple inputs of different types.

See Also
ProcessObject::GenerateInputRequestedRegion(), ImageSource::GenerateInputRequestedRegion()

Reimplemented from itk::ImageToImageFilter< TLabelImage, TLabelImage >.

template<class TLabelImage >
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetDiceCoefficient ( )
inline

alternative names

Definition at line 166 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetDiceCoefficient ( LabelType  label)
inline

alternative names

Definition at line 168 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalseNegativeError ( )
template<class TLabelImage >
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalseNegativeError ( LabelType  )
template<class TLabelImage >
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalsePositiveError ( )
template<class TLabelImage >
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalsePositiveError ( LabelType  )
template<class TLabelImage >
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetJaccardCoefficient ( )
inline

alternative names

Definition at line 162 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetJaccardCoefficient ( LabelType  label)
inline

alternative names

Definition at line 164 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
MapType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetLabelSetMeasures ( )
inline

Get the label set measures

Definition at line 138 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetMeanOverlap ( )
template<class TLabelImage >
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetMeanOverlap ( LabelType  )
template<class TLabelImage >
virtual const char* itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetNameOfClass ( ) const
virtual

Runtime information support.

Reimplemented from itk::ImageToImageFilter< TLabelImage, TLabelImage >.

template<class TLabelImage >
const LabelImageType* itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetSourceImage ( void  )
inline

Get the source image.

Definition at line 130 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
const LabelImageType* itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetTargetImage ( void  )
inline

Get the target image.

Definition at line 134 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetTargetOverlap ( LabelType  )

measures over individual labels

template<class TLabelImage >
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetTotalOverlap ( )

tric overlap measuresmeasures over all labels

template<class TLabelImage >
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetUnionOverlap ( )
template<class TLabelImage >
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetUnionOverlap ( LabelType  )
template<class TLabelImage >
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetVolumeSimilarity ( )
template<class TLabelImage >
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetVolumeSimilarity ( LabelType  )
template<class TLabelImage >
static Pointer itk::LabelOverlapMeasuresImageFilter< TLabelImage >::New ( )
static

Method for creation through the object factory.

template<class TLabelImage >
void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::operator= ( const Self )
private
template<class TLabelImage >
void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TLabelImage, TLabelImage >.

template<class TLabelImage >
void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::SetSourceImage ( const LabelImageType image)
inline

Set the source image.

Definition at line 122 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::SetTargetImage ( const LabelImageType image)
inline

Set the target image.

Definition at line 126 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
void itk::LabelOverlapMeasuresImageFilter< TLabelImage >::ThreadedGenerateData ( const RegionType ,
ThreadIdType   
)
protected

Multi-thread version GenerateData.

template<class TLabelImage >
itk::LabelOverlapMeasuresImageFilter< TLabelImage >::typedef ( Concept::HasNumericTraits< LabelType )

Begin concept checking This class requires Input1HasNumericTraitsCheck in the form of ( Concept::HasNumericTraits<LabelType> )

Member Data Documentation

template<class TLabelImage >
const unsigned int itk::LabelOverlapMeasuresImageFilter< TLabelImage >::ImageDimension = TLabelImage::ImageDimension
static

Image related typedefs.

Definition at line 119 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
MapType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::m_LabelSetMeasures
private

Definition at line 211 of file itkLabelOverlapMeasuresImageFilter.h.

template<class TLabelImage >
std::vector<MapType> itk::LabelOverlapMeasuresImageFilter< TLabelImage >::m_LabelSetMeasuresPerThread
private

Definition at line 210 of file itkLabelOverlapMeasuresImageFilter.h.


The documentation for this class was generated from the following file: