ITK  4.3.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Types | Protected Member Functions | Private Member Functions | Private Attributes | List of all members
itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage > Class Template Reference
Module ITKTransform

#include <itkLandmarkBasedTransformInitializer.h>

+ Inheritance diagram for itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >:
+ Collaboration diagram for itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >:

Detailed Description

template<class TTransform, class TFixedImage, class TMovingImage>
class itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >

LandmarkBasedTransformInitializer is a helper class intended to The class computes the transform that aligns the fixed and moving images given a set of landmarks. The class is templated over the Transform type. The transform computed gives the best fit transform that maps the fixed and moving images in a least squares sense. The indices are taken to correspond, so point 1 in the first set will get mapped close to point 1 in the second set, etc. An equal number of fixed and moving landmarks need to be specified using SetFixedLandmarks() SetMovingLandmarks(). Any number of landmarks may be specified. Call InitializeTransform() to initialize the transform.

Currently, the following transforms are supported by the class: VersorRigid3DTransform Rigid2DTransform

The class is based in part on Hybrid/vtkLandmarkTransform originally implemented in python by David G. Gobbi.

The solution is based on Berthold K. P. Horn (1987), "Closed-form solution of absolute orientation using unit quaternions," http://people.csail.mit.edu/bkph/papers/Absolute_Orientation.pdf

The Affine Transform initializer is based on an algorithm by H Spaeth, and is described in the Insight Journal Article "Affine Transformation for Landmark Based Registration Initializer in ITK" by Kim E.Y., Johnson H., Williams N. available at http://midasjournal.com/browse/publication/825

Wiki Examples:

Definition at line 70 of file itkLandmarkBasedTransformInitializer.h.

Public Types

typedef AffineTransform
< ParameterValueType,
FixedImageType::ImageDimension > 		AffineTransformType
 
typedef SmartPointer< const Self > ConstPointer
 
typedef
FixedImageType::ConstPointer 		FixedImagePointer
 
typedef TFixedImage FixedImageType
 
typedef
TransformType::InputPointType 		InputPointType
 
typedef std::vector
< LandmarkPointType > 		LandmarkPointContainer
 
typedef Point< double,
itkGetStaticConstMacro(ImageDimension) > 		LandmarkPointType
 
typedef
LandmarkWeightType::const_iterator 		LandmarkWeightConstIterator
 
typedef std::vector< double > LandmarkWeightType
 
typedef
MovingImageType::ConstPointer 		MovingImagePointer
 
typedef TMovingImage MovingImageType
 
typedef
TransformType::OutputVectorType 		OutputVectorType
 
typedef
TransformType::ParametersType 		ParametersType
 
typedef ParametersType::ValueType ParameterValueType
 
typedef SmartPointer< Self > Pointer
 
typedef
LandmarkPointContainer::const_iterator 		PointsContainerConstIterator
 
typedef Rigid2DTransform
< ParameterValueType > 		Rigid2DTransformType
 
typedef
LandmarkBasedTransformInitializer 		Self
 
typedef Object Superclass
 
typedef TransformType::Pointer TransformPointer
 
typedef TTransform TransformType
 
typedef VersorRigid3DTransform
< ParameterValueType > 		VersorRigid3DTransformType
 
- Public Types inherited from itk::Object
typedef SmartPointer< const Self > ConstPointer
 
typedef SmartPointer< Self > Pointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const Self > ConstPointer
 
typedef SmartPointer< Self > Pointer
 
typedef LightObject Self
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual const char * GetNameOfClass () const
 
virtual void InitializeTransform ()
 
void SetFixedLandmarks (const LandmarkPointContainer &fixedLandmarks)
 
void SetLandmarkWeight (LandmarkWeightType &landmarkWeight)
 
void SetMovingLandmarks (const LandmarkPointContainer &movingLandmarks)
 
virtual void SetTransform (TransformType *_arg)
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
Command * GetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionary & GetMetaDataDictionary (void)
 
const MetaDataDictionary & GetMetaDataDictionary (void) const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStamp & GetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int)
 
virtual void UnRegister () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Static Public Attributes

static const unsigned int ImageDimension = FixedImageType::ImageDimension
 
static const unsigned int InputSpaceDimension = TransformType::InputSpaceDimension
 
static const unsigned int OutputSpaceDimension = TransformType::OutputSpaceDimension
 

Protected Types

enum  InputTransformType {
  VersorRigid3Dtransform = 1,
  Rigid2Dtransfrom,
  Else
}
 

Protected Member Functions

 LandmarkBasedTransformInitializer ()
 
void PrintSelf (std::ostream &os, Indent indent) const
 
 ~LandmarkBasedTransformInitializer ()
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object ()
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Member Functions

template<class TTransform2 >
void InternalInitializeTransform (TTransform *)
 
void InternalInitializeTransform (VersorRigid3DTransformType *)
 
void InternalInitializeTransform (Rigid2DTransformType *)
 
void InternalInitializeTransform (AffineTransformType *)
 
 LandmarkBasedTransformInitializer (const Self &)
 
void operator= (const Self &)
 

Private Attributes

FixedImagePointer m_FixedImage
 
LandmarkPointContainer m_FixedLandmarks
 
LandmarkWeightType m_LandmarkWeight
 
MovingImagePointer m_MovingImage
 
LandmarkPointContainer m_MovingLandmarks
 
TransformPointer m_Transform
 

Additional Inherited Members

- Protected Attributes inherited from itk::LightObject
InternalReferenceCountType m_ReferenceCount
 
SimpleFastMutexLock m_ReferenceCountLock
 

Member Typedef Documentation

template<class TTransform , class TFixedImage , class TMovingImage >
typedef AffineTransform< ParameterValueType, FixedImageType::ImageDimension > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::AffineTransformType

Definition at line 143 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef SmartPointer< const Self > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::ConstPointer

Definition at line 78 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef FixedImageType::ConstPointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::FixedImagePointer

Definition at line 103 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef TFixedImage itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::FixedImageType

Image Types to use in the initialization of the transform

Definition at line 96 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef TransformType::InputPointType itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InputPointType

Convenience typedefs

Definition at line 110 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef std::vector< LandmarkPointType > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::LandmarkPointContainer

Definition at line 113 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef Point< double, itkGetStaticConstMacro(ImageDimension) > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::LandmarkPointType

Definition at line 112 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef LandmarkWeightType::const_iterator itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::LandmarkWeightConstIterator

Definition at line 118 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef std::vector< double > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::LandmarkWeightType

Definition at line 117 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef MovingImageType::ConstPointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::MovingImagePointer

Definition at line 104 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef TMovingImage itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::MovingImageType

Definition at line 100 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef TransformType::OutputVectorType itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::OutputVectorType

Definition at line 111 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef TransformType::ParametersType itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::ParametersType

Definition at line 115 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef ParametersType::ValueType itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::ParameterValueType

Definition at line 116 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef SmartPointer< Self > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::Pointer

Definition at line 77 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef LandmarkPointContainer::const_iterator itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::PointsContainerConstIterator

Definition at line 114 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef Rigid2DTransform< ParameterValueType > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::Rigid2DTransformType

Definition at line 142 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef LandmarkBasedTransformInitializer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::Self

Standard class typedefs.

Definition at line 75 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef Object itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::Superclass

Definition at line 76 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef TransformType::Pointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::TransformPointer

Definition at line 88 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef TTransform itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::TransformType

Type of the transform to initialize

Definition at line 84 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef VersorRigid3DTransform< ParameterValueType > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::VersorRigid3DTransformType

Supported Transform typedefs

Definition at line 141 of file itkLandmarkBasedTransformInitializer.h.

Member Enumeration Documentation

template<class TTransform , class TFixedImage , class TMovingImage >
enum itk::LandmarkBasedTransformInitializer::InputTransformType
protected
Enumerator:
VersorRigid3Dtransform 
Rigid2Dtransfrom 
Else 

Definition at line 155 of file itkLandmarkBasedTransformInitializer.h.

Constructor & Destructor Documentation

template<class TTransform , class TFixedImage , class TMovingImage >
itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::LandmarkBasedTransformInitializer ( )
protected
template<class TTransform , class TFixedImage , class TMovingImage >
itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::~LandmarkBasedTransformInitializer ( )
inlineprotected

Definition at line 150 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::LandmarkBasedTransformInitializer ( const Self &  )
private

Member Function Documentation

template<class TTransform , class TFixedImage , class TMovingImage >
virtual::itk::LightObject::Pointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<class TTransform , class TFixedImage , class TMovingImage >
virtual const char* itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::Object.

template<class TTransform , class TFixedImage , class TMovingImage >
virtual void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InitializeTransform ( )
virtual

Initialize the transform from the landmarks

template<class TTransform , class TFixedImage , class TMovingImage >
template<class TTransform2 >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InternalInitializeTransform ( TTransform *  )
private

fallback Initializer just sets transform to identity

template<class TTransform , class TFixedImage , class TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InternalInitializeTransform ( VersorRigid3DTransformType *  )
private

Initializer for VersorRigid3D

template<class TTransform , class TFixedImage , class TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InternalInitializeTransform ( Rigid2DTransformType *  )
private

Initializer for Rigid2DTransform

template<class TTransform , class TFixedImage , class TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InternalInitializeTransform ( AffineTransformType *  )
private

Initializer for AffineTransform

template<class TTransform , class TFixedImage , class TMovingImage >
static Pointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::New ( )
static

New macro for creation of through a Smart Pointer.

template<class TTransform , class TFixedImage , class TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::operator= ( const Self &  )
private
template<class TTransform , class TFixedImage , class TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::Object.

template<class TTransform , class TFixedImage , class TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::SetFixedLandmarks ( const LandmarkPointContainer &  fixedLandmarks)
inline

Set the Fixed landmark point containers

Definition at line 121 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::SetLandmarkWeight ( LandmarkWeightType &  landmarkWeight)
inline

Set the landmark weight point containers Weight includes diagonal elements of weight matrix

Definition at line 135 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::SetMovingLandmarks ( const LandmarkPointContainer &  movingLandmarks)
inline

Set the Moving landmark point containers

Definition at line 127 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
virtual void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::SetTransform ( TransformType *  _arg)
virtual

Set the transform to be initialized

Member Data Documentation

template<class TTransform , class TFixedImage , class TMovingImage >
const unsigned int itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::ImageDimension = FixedImageType::ImageDimension
static

Determine the image dimension.

Definition at line 107 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
const unsigned int itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InputSpaceDimension = TransformType::InputSpaceDimension
static

Dimension of parameters.

Definition at line 91 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
FixedImagePointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::m_FixedImage
private

Definition at line 179 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
LandmarkPointContainer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::m_FixedLandmarks
private

Definition at line 182 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
LandmarkWeightType itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::m_LandmarkWeight
private

weights for affine landmarks

Definition at line 187 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
MovingImagePointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::m_MovingImage
private

Definition at line 180 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
LandmarkPointContainer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::m_MovingLandmarks
private

Definition at line 183 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
TransformPointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::m_Transform
private

Definition at line 185 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
const unsigned int itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::OutputSpaceDimension = TransformType::OutputSpaceDimension
static

Dimension of parameters.

Definition at line 92 of file itkLandmarkBasedTransformInitializer.h.

The documentation for this class was generated from the following file:
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