ITK
4.3.0
Insight Segmentation and Registration Toolkit
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#include <itkSliceBySliceImageFilter.h>
Apply a filter or a pipeline slice by slice on an image.
SliceBySliceImageFilter let the user apply a filter or a pipeline of filters on the slices of an image. The filters must work on images smaller of one dimension than the input and output images of the SliceBySliceImageFilter - if the SliceBySliceImageFilter work on 3D images, the filters used internally must work on 2D images.
The dimension along which the slices are extracted can be selected with SetDimension() and defaults to the last one.
SliceBySliceImageFilter takes the input and the output filters of a pipeline as parameter. They can be set with SetInputFilter() and SetOutputFilter(). The pipeline will be run once per slice.
If there is only one filter to apply to the slices of the input image, the SetFilter() method can be used to set the filter passed as parameter both as the input and as the output filter.
SliceBySliceImageFilter can take several images as input. In that case, the same number of slices will be passed to the input filter. If the output filter produce several output slices, SliceBySliceImageFilter produce the same number of output images. The input images are passed with the same input number to the input filter - if SetInput( 3, img ) is used on the SliceBySliceImageFilter the corresponding slice will be passed to the input filter with SetInput( 3, img ). See http://www.itk.org/pipermail/insight-users/2008-May/026112.html for an example of usage of that feature with MaskImageFilter.
The requested region is always enlarged by the filter to cover entirely the whole slice - however, only the slice in the requested region are processed (the requested region is not enlarged to the whole image if not needed).
The ouput images of SliceBySliceImageFilter must be of the same size than the input images. All the input images must be of the same pixel type. All the output images must be of the same pixel type.
This class was taken from the Insight Journal paper: http://hdl.handle.net/1926/368
Definition at line 80 of file itkSliceBySliceImageFilter.h.
Public Types | |
typedef SmartPointer< const Self > | ConstPointer |
typedef TInputImage::IndexType | IndexType |
typedef TInputFilter | InputFilterType |
typedef Superclass::InputImagePointer | InputImagePointer |
typedef TInputImage | InputImageType |
typedef InternalInputImageType::IndexType | InternalIndexType |
typedef TInternalInputImage | InternalInputImageType |
typedef InternalInputImageType::PixelType | InternalInputPixelType |
typedef InternalInputImageType::OffsetType | InternalOffsetType |
typedef TInternalOutputImage | InternalOutputImageType |
typedef InternalOutputImageType::PixelType | InternalOutputPixelType |
typedef InternalInputImageType::RegionType | InternalRegionType |
typedef InternalInputImageType::SizeType | InternalSizeType |
typedef TInputImage::OffsetType | OffsetType |
typedef TOutputFilter | OutputFilterType |
typedef TOutputImage | OutputImageType |
typedef TOutputImage::PixelType | OutputPixelType |
typedef TInputImage::PixelType | PixelType |
typedef SmartPointer< Self > | Pointer |
typedef TInputImage::RegionType | RegionType |
typedef SliceBySliceImageFilter | Self |
typedef TInputImage::SizeType | SizeType |
typedef ImageToImageFilter < TInputImage, TOutputImage > | Superclass |
Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage > | |
typedef SmartPointer< const Self > | ConstPointer |
typedef InputImageType::ConstPointer | InputImageConstPointer |
typedef InputImageType::PixelType | InputImagePixelType |
typedef InputImageType::Pointer | InputImagePointer |
typedef InputImageType::RegionType | InputImageRegionType |
typedef TInputImage | InputImageType |
typedef Superclass::OutputImagePixelType | OutputImagePixelType |
typedef Superclass::OutputImageRegionType | OutputImageRegionType |
typedef SmartPointer< Self > | Pointer |
typedef ImageToImageFilter | Self |
typedef ImageSource< TOutputImage > | Superclass |
Public Types inherited from itk::ImageSource< TOutputImage > | |
typedef SmartPointer< const Self > | ConstPointer |
typedef Superclass::DataObjectIdentifierType | DataObjectIdentifierType |
typedef DataObject::Pointer | DataObjectPointer |
typedef Superclass::DataObjectPointerArraySizeType | DataObjectPointerArraySizeType |
typedef OutputImageType::PixelType | OutputImagePixelType |
typedef OutputImageType::Pointer | OutputImagePointer |
typedef OutputImageType::RegionType | OutputImageRegionType |
typedef TOutputImage | OutputImageType |
typedef SmartPointer< Self > | Pointer |
typedef ImageSource | Self |
typedef ProcessObject | Superclass |
Public Types inherited from itk::ProcessObject | |
typedef SmartPointer< const Self > | ConstPointer |
typedef DataObject::DataObjectIdentifierType | DataObjectIdentifierType |
typedef DataObject::Pointer | DataObjectPointer |
typedef std::vector < DataObjectPointer > | DataObjectPointerArray |
typedef DataObjectPointerArray::size_type | DataObjectPointerArraySizeType |
typedef std::vector < DataObjectIdentifierType > | NameArray |
typedef SmartPointer< Self > | Pointer |
typedef ProcessObject | Self |
typedef Object | Superclass |
Public Types inherited from itk::Object | |
typedef SmartPointer< const Self > | ConstPointer |
typedef SmartPointer< Self > | Pointer |
typedef Object | Self |
typedef LightObject | Superclass |
Public Types inherited from itk::LightObject | |
typedef SmartPointer< const Self > | ConstPointer |
typedef SmartPointer< Self > | Pointer |
typedef LightObject | Self |
Static Public Member Functions | |
static Pointer | New () |
Static Public Attributes | |
static const unsigned int | ImageDimension = TInputImage::ImageDimension |
static const unsigned int | InternalImageDimension = InternalInputImageType::ImageDimension |
Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage > | |
static const unsigned int | InputImageDimension = TInputImage::ImageDimension |
static const unsigned int | OutputImageDimension = TOutputImage::ImageDimension |
Static Public Attributes inherited from itk::ImageSource< TOutputImage > | |
static const unsigned int | OutputImageDimension = TOutputImage::ImageDimension |
Private Member Functions | |
void | operator= (const Self &) |
SliceBySliceImageFilter (const Self &) | |
Private Attributes | |
unsigned int | m_Dimension |
InputFilterType::Pointer | m_InputFilter |
OutputFilterType::Pointer | m_OutputFilter |
IndexValueType | m_SliceIndex |
Additional Inherited Members | |
Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage > | |
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension) > | InputToOutputRegionCopierType |
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) > | OutputToInputRegionCopierType |
Static Protected Member Functions inherited from itk::ImageSource< TOutputImage > | |
static ITK_THREAD_RETURN_TYPE | ThreaderCallback (void *arg) |
Protected Attributes inherited from itk::ProcessObject | |
TimeStamp | m_OutputInformationMTime |
bool | m_Updating |
typedef SmartPointer< const Self > itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::ConstPointer |
Definition at line 88 of file itkSliceBySliceImageFilter.h.
typedef TInputImage::IndexType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::IndexType |
Definition at line 103 of file itkSliceBySliceImageFilter.h.
typedef TInputFilter itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InputFilterType |
Definition at line 110 of file itkSliceBySliceImageFilter.h.
typedef Superclass::InputImagePointer itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InputImagePointer |
Superclass typedefs.
Definition at line 91 of file itkSliceBySliceImageFilter.h.
typedef TInputImage itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InputImageType |
Image related typedefs.
Definition at line 97 of file itkSliceBySliceImageFilter.h.
typedef InternalInputImageType::IndexType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalIndexType |
Definition at line 116 of file itkSliceBySliceImageFilter.h.
typedef TInternalInputImage itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalInputImageType |
Definition at line 113 of file itkSliceBySliceImageFilter.h.
typedef InternalInputImageType::PixelType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalInputPixelType |
Definition at line 118 of file itkSliceBySliceImageFilter.h.
typedef InternalInputImageType::OffsetType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalOffsetType |
Definition at line 117 of file itkSliceBySliceImageFilter.h.
typedef TInternalOutputImage itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalOutputImageType |
Definition at line 120 of file itkSliceBySliceImageFilter.h.
typedef InternalOutputImageType::PixelType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalOutputPixelType |
Definition at line 121 of file itkSliceBySliceImageFilter.h.
typedef InternalInputImageType::RegionType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalRegionType |
Definition at line 114 of file itkSliceBySliceImageFilter.h.
typedef InternalInputImageType::SizeType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::InternalSizeType |
Definition at line 115 of file itkSliceBySliceImageFilter.h.
typedef TInputImage::OffsetType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::OffsetType |
Definition at line 105 of file itkSliceBySliceImageFilter.h.
typedef TOutputFilter itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::OutputFilterType |
Definition at line 111 of file itkSliceBySliceImageFilter.h.
typedef TOutputImage itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::OutputImageType |
Definition at line 107 of file itkSliceBySliceImageFilter.h.
typedef TOutputImage::PixelType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::OutputPixelType |
Definition at line 108 of file itkSliceBySliceImageFilter.h.
typedef TInputImage::PixelType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::PixelType |
Definition at line 104 of file itkSliceBySliceImageFilter.h.
typedef SmartPointer< Self > itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::Pointer |
Definition at line 87 of file itkSliceBySliceImageFilter.h.
typedef TInputImage::RegionType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::RegionType |
Definition at line 101 of file itkSliceBySliceImageFilter.h.
typedef SliceBySliceImageFilter itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::Self |
Standard class typedefs.
Definition at line 85 of file itkSliceBySliceImageFilter.h.
typedef TInputImage::SizeType itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::SizeType |
Definition at line 102 of file itkSliceBySliceImageFilter.h.
typedef ImageToImageFilter< TInputImage, TOutputImage > itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::Superclass |
Definition at line 86 of file itkSliceBySliceImageFilter.h.
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Definition at line 161 of file itkSliceBySliceImageFilter.h.
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Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::Object.
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Give the process object a chance to indictate that it will produce more output than it was requested to produce. For example, many imaging filters must compute the entire output at once or can only produce output in complete slices. Such filters cannot handle smaller requested regions. These filters must provide an implementation of this method, setting the output requested region to the size they will produce. By default, a process object does not modify the size of the output requested region.
Reimplemented from itk::ProcessObject.
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A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.
Reimplemented from itk::ImageSource< TOutputImage >.
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Definition at line 135 of file itkSliceBySliceImageFilter.h.
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Definition at line 140 of file itkSliceBySliceImageFilter.h.
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Runtime information support.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
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The index of the slice currently processed by the filter. This is intended to be used with the IterationEvent sent before the processing of each object. It contains a relevant value only during the filter update.
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Standard New method.
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Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
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void itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::SetFilter | ( | InputFilterType * | filter | ) |
void itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::SetInputFilter | ( | InputFilterType * | filter | ) |
void itk::SliceBySliceImageFilter< TInputImage, TOutputImage, TInputFilter, TOutputFilter, TInternalInputImage, TInternalOutputImage >::SetOutputFilter | ( | OutputFilterType * | filter | ) |
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Image related typedefs.
Definition at line 125 of file itkSliceBySliceImageFilter.h.
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Definition at line 128 of file itkSliceBySliceImageFilter.h.
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Definition at line 173 of file itkSliceBySliceImageFilter.h.
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Definition at line 175 of file itkSliceBySliceImageFilter.h.
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Definition at line 177 of file itkSliceBySliceImageFilter.h.
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Definition at line 179 of file itkSliceBySliceImageFilter.h.