ITK  4.3.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | Private Types | Private Member Functions | Private Attributes | Static Private Attributes | List of all members
itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage > Class Template Reference

#include <itkThresholdMaximumConnectedComponentsImageFilter.h>

+ Inheritance diagram for itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >:
+ Collaboration diagram for itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >:

Detailed Description

template<class TInputImage, class TOutputImage = TInputImage>
class itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >

Finds the threshold value of an image based on maximizing the number of objects in the image that are larger than a given minimal size.

This method is based on Topological Stable State Thresholding to calculate the threshold set point. This method is particularly effective when there are a large number of objects in a microscopy image. Compiling in Debug mode and enable the debug flag for this filter to print debug information to see how the filter focuses in on a threshold value. Please see the Insight Journal's MICCAI 2005 workshop for a complete description. References are below.
Parameters
The MinimumObjectSizeInPixels parameter is controlled through the class Get/SetMinimumObjectSizeInPixels() method. Similar to the standard itk::BinaryThresholdImageFilter the Get/SetInside and Get/SetOutside values of the threshold can be set. The GetNumberOfObjects() and GetThresholdValue() methods return the number of objects above the minimum pixel size and the calculated threshold value.
Automatic Thresholding in ITK
There are multiple methods to automatically calculate the threshold intensity value of an image. As of version 4.0, ITK has a Thresholding ( ITKThresholding ) module which contains numerous automatic thresholding methods.implements two of these. Topological Stable State Thresholding works well on images with a large number of objects to be counted.
References:
1) Urish KL, August J, Huard J. "Unsupervised segmentation for myofiber counting in immunoflourescent images". Insight Journal. ISC/NA-MIC/MICCAI Workshop on Open-Source Software (2005) Dspace handle: http://hdl.handle.net/1926/48 2) Pikaz A, Averbuch, A. "Digital image thresholding based on topological stable-state". Pattern Recognition, 29(5): 829-843, 1996.
Questions: email Ken Urish at ken.urish(at)gmail.com Please cc the itk list serve for archival purposes.

Definition at line 74 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

Public Types

typedef SmartPointer< const SelfConstPointer
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef
InputImageType::ConstPointer 
InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef TInputImage InputImageType
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef TOutputImage OutputImageType
 
typedef TInputImage::PixelType PixelType
 
typedef SmartPointer< SelfPointer
 
typedef
ThresholdMaximumConnectedComponentsImageFilter 
Self
 
typedef ImageToImageFilter
< TInputImage, TOutputImage > 
Superclass
 
- Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
InputImageType::ConstPointer 
InputImageConstPointer
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef TInputImage InputImageType
 
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
 
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
 
typedef SmartPointer< SelfPointer
 
typedef ImageToImageFilter Self
 
typedef ImageSource< TOutputImage > Superclass
 
- Public Types inherited from itk::ImageSource< TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef
Superclass::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef TOutputImage OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef ImageSource Self
 
typedef ProcessObject Superclass
 
- Public Types inherited from itk::ProcessObject
typedef SmartPointer< const SelfConstPointer
 
typedef
DataObject::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
 
typedef
DataObjectPointerArray::size_type 
DataObjectPointerArraySizeType
 
typedef std::vector
< DataObjectIdentifierType
NameArray
 
typedef SmartPointer< SelfPointer
 
typedef ProcessObject Self
 
typedef Object Superclass
 
- Public Types inherited from itk::Object
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightObject Self
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual const char * GetNameOfClass () const
 
virtual SizeValueType GetNumberOfObjects () const
 
virtual PixelType GetThresholdValue () const
 
 typedef (Concept::Comparable< PixelType >) PixelTypeComparable
 
virtual void SetMinimumObjectSizeInPixels (unsigned int _arg)
 
virtual unsigned int GetMinimumObjectSizeInPixels () const
 
virtual void SetInsideValue (PixelType _arg)
 
virtual void SetOutsideValue (PixelType _arg)
 
virtual void SetUpperBoundary (PixelType _arg)
 
virtual PixelType GetInsideValue () const
 
virtual PixelType GetOutsideValue () const
 
virtual PixelType GetUpperBoundary () const
 
- Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual double GetCoordinateTolerance ()
 
const InputImageTypeGetInput (void) const
 
const InputImageTypeGetInput (unsigned int idx) const
 
virtual void PopBackInput ()
 
virtual void PopFrontInput ()
 
virtual void PushBackInput (const InputImageType *image)
 
virtual void PushFrontInput (const InputImageType *image)
 
virtual void SetCoordinateTolerance (double _arg)
 
virtual void SetInput (const InputImageType *image)
 
virtual void SetInput (unsigned int, const TInputImage *image)
 
virtual void SetDirectionTolerance (double _arg)
 
virtual double GetDirectionTolerance ()
 
- Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageTypeGetOutput (unsigned int idx)
 
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
 
virtual void GraftOutput (DataObject *output)
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
 
OutputImageTypeGetOutput (void)
 
const OutputImageTypeGetOutput (void) const
 
virtual
ProcessObject::DataObjectPointer 
MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx)
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData ()
 
NameArray GetInputNames () const
 
MultiThreader * GetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
virtual const float & GetProgress ()
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual DataObjectPointer MakeOutput (const DataObjectIdentifierType &)
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void SetProgress (float _arg)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float amount)
 
DataObjectPointerArray GetInputs ()
 
DataObjectPointerArray GetOutputs ()
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag ()
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfThreads (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfThreads ()
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary (void)
 
const MetaDataDictionaryGetMetaDataDictionary (void) const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int)
 
virtual void UnRegister () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 

Protected Member Functions

SizeValueType ComputeConnectedComponents (void)
 
void GenerateData (void)
 
void PrintSelf (std::ostream &os, Indent indent) const
 
 ThresholdMaximumConnectedComponentsImageFilter ()
 
 ~ThresholdMaximumConnectedComponentsImageFilter ()
 
- Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
 
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 
virtual void GenerateInputRequestedRegion ()
 
virtual void VerifyInputInformation ()
 
void PushBackInput (const DataObject *input)
 
void PushFrontInput (const DataObject *input)
 
 ImageToImageFilter ()
 
 ~ImageToImageFilter ()
 
- Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void AfterThreadedGenerateData ()
 
virtual void AllocateOutputs ()
 
virtual void BeforeThreadedGenerateData ()
 
 ImageSource ()
 
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
 
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
 
virtual ~ImageSource ()
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
virtual void AddOutput (DataObject *output)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateOutputInformation ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs ()
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
void SetRequiredInputNames (const NameArray &)
 
virtual void VerifyPreconditions ()
 
 ~ProcessObject ()
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
DataObjectGetInput (DataObjectPointerArraySizeType)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName () const
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName () const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs ()
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object ()
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Types

typedef
ConnectedComponentImageFilter
< OutputImageType,
FilterImageType
ConnectedFilterType
 
typedef FilterImageType::Pointer FilterImagePointer
 
typedef itk::Image
< FilterPixelType,
itkGetStaticConstMacro(ImageDimension) > 
FilterImageType
 
typedef unsigned int FilterPixelType
 
typedef
MinimumMaximumImageCalculator
< InputImageType
MinMaxCalculatorType
 
typedef
RelabelComponentImageFilter
< FilterImageType,
FilterImageType
RelabelFilterType
 
typedef
BinaryThresholdImageFilter
< InputImageType,
OutputImageType
ThresholdFilterType
 

Private Member Functions

void operator= (const Self &)
 
 ThresholdMaximumConnectedComponentsImageFilter (const Self &)
 

Private Attributes

ConnectedFilterType::Pointer m_ConnectedComponent
 
PixelType m_InsideValue
 
RelabelFilterType::Pointer m_LabeledComponent
 
PixelType m_LowerBoundary
 
unsigned int m_MinimumObjectSizeInPixels
 
MinMaxCalculatorType::Pointer m_MinMaxCalculator
 
SizeValueType m_NumberOfObjects
 
PixelType m_OutsideValue
 
ThresholdFilterType::Pointer m_ThresholdFilter
 
PixelType m_ThresholdValue
 
PixelType m_UpperBoundary
 

Static Private Attributes

static const unsigned int ImageDimension = TInputImage::ImageDimension
 

Additional Inherited Members

- Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int InputImageDimension = TInputImage::ImageDimension
 
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 
- Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(OutputImageDimension),
itkGetStaticConstMacro(InputImageDimension) > 
InputToOutputRegionCopierType
 
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(InputImageDimension),
itkGetStaticConstMacro(OutputImageDimension) > 
OutputToInputRegionCopierType
 
- Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static ITK_THREAD_RETURN_TYPE ThreaderCallback (void *arg)
 
- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 

Member Typedef Documentation

template<class TInputImage , class TOutputImage = TInputImage>
typedef ConnectedComponentImageFilter< OutputImageType, FilterImageType > itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::ConnectedFilterType
private
template<class TInputImage , class TOutputImage = TInputImage>
typedef SmartPointer< const Self > itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::ConstPointer
template<class TInputImage , class TOutputImage = TInputImage>
typedef FilterImageType::Pointer itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::FilterImagePointer
private
template<class TInputImage , class TOutputImage = TInputImage>
typedef itk::Image< FilterPixelType, itkGetStaticConstMacro(ImageDimension) > itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::FilterImageType
private
template<class TInputImage , class TOutputImage = TInputImage>
typedef unsigned int itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::FilterPixelType
private

Typedef for filter pixel type.

Definition at line 168 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

template<class TInputImage , class TOutputImage = TInputImage>
typedef InputImageType::PixelType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::InputImagePixelType
template<class TInputImage , class TOutputImage = TInputImage>
typedef InputImageType::ConstPointer itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::InputImagePointer
template<class TInputImage , class TOutputImage = TInputImage>
typedef InputImageType::RegionType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::InputImageRegionType
template<class TInputImage , class TOutputImage = TInputImage>
typedef TInputImage itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::InputImageType

Some additional typedefs.

Definition at line 138 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

template<class TInputImage , class TOutputImage = TInputImage>
typedef MinimumMaximumImageCalculator< InputImageType > itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::MinMaxCalculatorType
private
template<class TInputImage , class TOutputImage = TInputImage>
typedef OutputImageType::PixelType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::OutputImagePixelType
template<class TInputImage , class TOutputImage = TInputImage>
typedef OutputImageType::Pointer itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::OutputImagePointer
template<class TInputImage , class TOutputImage = TInputImage>
typedef OutputImageType::RegionType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::OutputImageRegionType
template<class TInputImage , class TOutputImage = TInputImage>
typedef TOutputImage itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::OutputImageType

Some additional typedefs.

Definition at line 147 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

template<class TInputImage , class TOutputImage = TInputImage>
typedef TInputImage::PixelType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::PixelType

Typedef to describe the type of pixel.

Definition at line 89 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

template<class TInputImage , class TOutputImage = TInputImage>
typedef SmartPointer< Self > itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::Pointer
template<class TInputImage , class TOutputImage = TInputImage>
typedef RelabelComponentImageFilter< FilterImageType, FilterImageType > itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::RelabelFilterType
private
template<class TInputImage , class TOutputImage = TInputImage>
typedef ThresholdMaximumConnectedComponentsImageFilter itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::Self

Standard class typedefs.

Definition at line 79 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

template<class TInputImage , class TOutputImage = TInputImage>
typedef ImageToImageFilter< TInputImage, TOutputImage > itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::Superclass
template<class TInputImage , class TOutputImage = TInputImage>
typedef BinaryThresholdImageFilter< InputImageType, OutputImageType > itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::ThresholdFilterType
private

Constructor & Destructor Documentation

template<class TInputImage , class TOutputImage = TInputImage>
itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::ThresholdMaximumConnectedComponentsImageFilter ( )
protected
template<class TInputImage , class TOutputImage = TInputImage>
itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::~ThresholdMaximumConnectedComponentsImageFilter ( )
inlineprotected
template<class TInputImage , class TOutputImage = TInputImage>
itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::ThresholdMaximumConnectedComponentsImageFilter ( const Self )
private

Member Function Documentation

template<class TInputImage , class TOutputImage = TInputImage>
SizeValueType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::ComputeConnectedComponents ( void  )
protected

Runs a series of filters that thresholds the image, dilates/erodes for edge enhancement, and counts the number of relabeled connected components

template<class TInputImage , class TOutputImage = TInputImage>
virtual::itk::LightObject::Pointer itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<class TInputImage , class TOutputImage = TInputImage>
void itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::GenerateData ( void  )
protectedvirtual

A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.

See Also
ThreadedGenerateData()

Reimplemented from itk::ImageSource< TOutputImage >.

template<class TInputImage , class TOutputImage = TInputImage>
virtual PixelType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::GetInsideValue ( ) const
virtual

The following Set/Get methods are for the binary threshold function. This class automatically calculates the lower threshold boundary. The upper threshold boundary, inside value, and outside value can be defined by the user, however the standard values are used as default if not set by the user. The default value of the: Inside value is the maximum pixel type intensity. Outside value is the minimum pixel type intensity. Upper threshold boundary is the maximum pixel type intensity.

template<class TInputImage , class TOutputImage = TInputImage>
virtual unsigned int itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::GetMinimumObjectSizeInPixels ( ) const
virtual

Set the minimum pixel area used to count objects on the image. Thus, only objects that have a pixel area greater than the minimum pixel area will be counted as an object in the optimization portion of this filter. Essentially, it eliminates noise from being counted as an object. The default value is zero.

template<class TInputImage , class TOutputImage = TInputImage>
virtual const char* itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage = TInputImage>
virtual SizeValueType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::GetNumberOfObjects ( ) const
virtual

Returns the number of objects in the image. This information is only valid after the filter has executed. Useful if your counting something

template<class TInputImage , class TOutputImage = TInputImage>
virtual PixelType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::GetOutsideValue ( ) const
virtual

The following Set/Get methods are for the binary threshold function. This class automatically calculates the lower threshold boundary. The upper threshold boundary, inside value, and outside value can be defined by the user, however the standard values are used as default if not set by the user. The default value of the: Inside value is the maximum pixel type intensity. Outside value is the minimum pixel type intensity. Upper threshold boundary is the maximum pixel type intensity.

template<class TInputImage , class TOutputImage = TInputImage>
virtual PixelType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::GetThresholdValue ( ) const
virtual

Returns the automatic threshold setpoint. This information is only valid after the filter has executed.

template<class TInputImage , class TOutputImage = TInputImage>
virtual PixelType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::GetUpperBoundary ( ) const
virtual

The following Set/Get methods are for the binary threshold function. This class automatically calculates the lower threshold boundary. The upper threshold boundary, inside value, and outside value can be defined by the user, however the standard values are used as default if not set by the user. The default value of the: Inside value is the maximum pixel type intensity. Outside value is the minimum pixel type intensity. Upper threshold boundary is the maximum pixel type intensity.

template<class TInputImage , class TOutputImage = TInputImage>
static Pointer itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::New ( )
static

Method for creation through the object factory.

template<class TInputImage , class TOutputImage = TInputImage>
void itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::operator= ( const Self )
private
template<class TInputImage , class TOutputImage = TInputImage>
void itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage = TInputImage>
virtual void itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::SetInsideValue ( PixelType  _arg)
virtual

The following Set/Get methods are for the binary threshold function. This class automatically calculates the lower threshold boundary. The upper threshold boundary, inside value, and outside value can be defined by the user, however the standard values are used as default if not set by the user. The default value of the: Inside value is the maximum pixel type intensity. Outside value is the minimum pixel type intensity. Upper threshold boundary is the maximum pixel type intensity.

template<class TInputImage , class TOutputImage = TInputImage>
virtual void itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::SetMinimumObjectSizeInPixels ( unsigned int  _arg)
virtual

Set the minimum pixel area used to count objects on the image. Thus, only objects that have a pixel area greater than the minimum pixel area will be counted as an object in the optimization portion of this filter. Essentially, it eliminates noise from being counted as an object. The default value is zero.

template<class TInputImage , class TOutputImage = TInputImage>
virtual void itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::SetOutsideValue ( PixelType  _arg)
virtual

The following Set/Get methods are for the binary threshold function. This class automatically calculates the lower threshold boundary. The upper threshold boundary, inside value, and outside value can be defined by the user, however the standard values are used as default if not set by the user. The default value of the: Inside value is the maximum pixel type intensity. Outside value is the minimum pixel type intensity. Upper threshold boundary is the maximum pixel type intensity.

template<class TInputImage , class TOutputImage = TInputImage>
virtual void itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::SetUpperBoundary ( PixelType  _arg)
virtual

The following Set/Get methods are for the binary threshold function. This class automatically calculates the lower threshold boundary. The upper threshold boundary, inside value, and outside value can be defined by the user, however the standard values are used as default if not set by the user. The default value of the: Inside value is the maximum pixel type intensity. Outside value is the minimum pixel type intensity. Upper threshold boundary is the maximum pixel type intensity.

template<class TInputImage , class TOutputImage = TInputImage>
itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::typedef ( Concept::Comparable< PixelType )

The pixel type must support comparison operators. This class requires PixelTypeComparable in the form of ( Concept::Comparable< PixelType > )

Member Data Documentation

template<class TInputImage , class TOutputImage = TInputImage>
const unsigned int itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::ImageDimension = TInputImage::ImageDimension
staticprivate
template<class TInputImage , class TOutputImage = TInputImage>
ConnectedFilterType::Pointer itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::m_ConnectedComponent
private
template<class TInputImage , class TOutputImage = TInputImage>
PixelType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::m_InsideValue
private
template<class TInputImage , class TOutputImage = TInputImage>
RelabelFilterType::Pointer itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::m_LabeledComponent
private
template<class TInputImage , class TOutputImage = TInputImage>
PixelType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::m_LowerBoundary
private
template<class TInputImage , class TOutputImage = TInputImage>
unsigned int itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::m_MinimumObjectSizeInPixels
private
template<class TInputImage , class TOutputImage = TInputImage>
MinMaxCalculatorType::Pointer itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::m_MinMaxCalculator
private
template<class TInputImage , class TOutputImage = TInputImage>
SizeValueType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::m_NumberOfObjects
private
template<class TInputImage , class TOutputImage = TInputImage>
PixelType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::m_OutsideValue
private
template<class TInputImage , class TOutputImage = TInputImage>
ThresholdFilterType::Pointer itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::m_ThresholdFilter
private
template<class TInputImage , class TOutputImage = TInputImage>
PixelType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::m_ThresholdValue
private
template<class TInputImage , class TOutputImage = TInputImage>
PixelType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::m_UpperBoundary
private

The documentation for this class was generated from the following file: