ITK  4.3.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Member Functions | Private Member Functions | Private Attributes | List of all members
itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform > Class Template Reference

#include <itkTimeVaryingVelocityFieldImageRegistrationMethodv4.h>

+ Inheritance diagram for itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >:
+ Collaboration diagram for itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >:

Detailed Description

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
class itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >

Interface method for the current registration framework using the time varying velocity field transform.

Output: The output is the updated transform which has been added to the composite transform.

This derived class from the ImageRegistrationMethodv4 class is specialized to handle time-varying velocity field transforms of which there are currently 2:

  1. TimeVaryingDisplacementFieldTransform
  2. GaussianSmoothingOnUpdateTimeVaryingDisplacementFieldTransform

The latter is derived from the former and performs an optional spatial and temporal smoothing on the update and total velocity fields. Integration of the velocity field is performed using 4th order Runge Kutta and is performed using the class itkTimeVaryingVelocityFieldIntegrationImageFilter.

Optimization occurs in an iterative fashion where for each sample time point, t, in the velocity field, we integrate the velocity field in the range [0, t] to yield the displacement field which warps fixed image to time point t. Simultaneously, we integrate the velocity field in the range [t, 1] to yield the displacement field transform which warps the moving image to time point t. The metric derivative for each time point of the velocity field calculated in this way produces the normalized update field (or gradient) of the velocity field to be added to the total field at each iteration after being multiplied by the learning rate and optionally smoothed. Mathematically, this can be described as

\[ v_{total} = G_1( v_{total} + \lambda * G_2( v_{update} ) ) \]

where

$ G_1 = $ gaussian smoothing on the total field $ G_2 = $ gaussian smoothing on the update field $ \lambda = $ learning rate $ v_{update} = $ the normalized velocity field where we normalize the velocity field at each time point separately by the max norm of the field at that time point. This is done due to a weakly necessary (but not sufficient) condition being that the velocity field have a constant norm for all time points.

Author
Nick Tustison
Brian Avants

Definition at line 93 of file itkTimeVaryingVelocityFieldImageRegistrationMethodv4.h.

Public Types

typedef
Superclass::CompositeTransformType 
CompositeTransformType
 
typedef SmartPointer< const SelfConstPointer
 
typedef
DecoratedOutputTransformType::Pointer 
DecoratedOutputTransformPointer
 
typedef
Superclass::DecoratedOutputTransformType 
DecoratedOutputTransformType
 
typedef
OutputTransformType::DerivativeType 
DerivativeType
 
typedef DerivativeType::ValueType DerivativeValueType
 
typedef
DisplacementFieldType::Pointer 
DisplacementFieldPointer
 
typedef
OutputTransformType::DisplacementFieldType 
DisplacementFieldType
 
typedef
TimeVaryingVelocityFieldType::PixelType 
DisplacementVectorType
 
typedef FixedImageType::Pointer FixedImagePointer
 
typedef TFixedImage FixedImageType
 
typedef ImageMetricType::Pointer ImageMetricPointer
 
typedef Superclass::ImageMetricType ImageMetricType
 
typedef
ImageMetricType::MeasureType 
MeasureType
 
typedef MovingImageType::Pointer MovingImagePointer
 
typedef TMovingImage MovingImageType
 
typedef Superclass::MultiMetricType MultiMetricType
 
typedef Array< SizeValueTypeNumberOfIterationsArrayType
 
typedef
OutputTransformType::Pointer 
OutputTransformPointer
 
typedef TOutputTransform OutputTransformType
 
typedef SmartPointer< SelfPointer
 
typedef
OutputTransformType::ScalarType 
RealType
 
typedef MovingImageType::RegionType RegionType
 
typedef
TimeVaryingVelocityFieldImageRegistrationMethodv4 
Self
 
typedef
ImageRegistrationMethodv4
< TFixedImage, TMovingImage,
TOutputTransform > 
Superclass
 
typedef
TimeVaryingVelocityFieldType::Pointer 
TimeVaryingVelocityFieldPointer
 
typedef
OutputTransformType::TimeVaryingVelocityFieldType 
TimeVaryingVelocityFieldType
 
typedef
ImageMetricType::VirtualImageType 
VirtualImageType
 
- Public Types inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >
typedef
CompositeTransformType::Pointer 
CompositeTransformPointer
 
typedef CompositeTransform
< RealType, ImageDimension
CompositeTransformType
 
typedef SmartPointer< const SelfConstPointer
 
typedef
ProcessObject::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
 
typedef
DecoratedOutputTransformType::Pointer 
DecoratedOutputTransformPointer
 
typedef DataObjectDecorator
< OutputTransformType
DecoratedOutputTransformType
 
typedef
OutputTransformType::DerivativeType 
DerivativeType
 
typedef DerivativeType::ValueType DerivativeValueType
 
typedef FixedImageType::Pointer FixedImagePointer
 
typedef std::vector
< FixedImagePointer
FixedImagesContainerType
 
typedef TFixedImage FixedImageType
 
typedef ImageToImageMetricv4
< FixedImageType,
MovingImageType
ImageMetricType
 
typedef
InitialTransformType::Pointer 
InitialTransformPointer
 
typedef Transform< RealType,
ImageDimension, ImageDimension
InitialTransformType
 
typedef MetricType::Pointer MetricPointer
 
typedef
ImageMetricType::FixedSampledPointSetType 
MetricSamplePointSetType
 
typedef Array< RealTypeMetricSamplingPercentageArrayType
 
enum  MetricSamplingStrategyType {
  NONE,
  REGULAR,
  RANDOM
}
 
typedef ObjectToObjectMetricBase MetricType
 
typedef MovingImageType::Pointer MovingImagePointer
 
typedef std::vector
< MovingImagePointer
MovingImagesContainerType
 
typedef TMovingImage MovingImageType
 
typedef
ObjectToObjectMultiMetricv4
< ImageDimension,
ImageDimension
MultiMetricType
 
typedef OptimizerType::Pointer OptimizerPointer
 
typedef ObjectToObjectOptimizerBase OptimizerType
 
typedef
OutputTransformType::Pointer 
OutputTransformPointer
 
typedef TOutputTransform OutputTransformType
 
typedef SmartPointer< SelfPointer
 
typedef
OutputTransformType::ScalarType 
RealType
 
typedef ImageRegistrationMethodv4 Self
 
typedef Array< SizeValueTypeShrinkFactorsArrayType
 
typedef Array< RealTypeSmoothingSigmasArrayType
 
typedef ProcessObject Superclass
 
typedef
TransformParametersAdaptorType::Pointer 
TransformParametersAdaptorPointer
 
typedef std::vector
< TransformParametersAdaptorPointer
TransformParametersAdaptorsContainerType
 
typedef
TransformParametersAdaptor
< OutputTransformType
TransformParametersAdaptorType
 
typedef
ImageMetricType::VirtualImageType 
VirtualImageType
 
- Public Types inherited from itk::ProcessObject
typedef SmartPointer< const SelfConstPointer
 
typedef
DataObject::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
 
typedef
DataObjectPointerArray::size_type 
DataObjectPointerArraySizeType
 
typedef std::vector
< DataObjectIdentifierType
NameArray
 
typedef SmartPointer< SelfPointer
 
typedef ProcessObject Self
 
typedef Object Superclass
 
- Public Types inherited from itk::Object
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightObject Self
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual const char * GetNameOfClass () const
 
virtual void SetLearningRate (RealType _arg)
 
virtual RealType GetLearningRate () const
 
virtual void SetNumberOfIterationsPerLevel (NumberOfIterationsArrayType _arg)
 
virtual NumberOfIterationsArrayType GetNumberOfIterationsPerLevel () const
 
virtual void SetConvergenceThreshold (RealType _arg)
 
virtual RealType GetConvergenceThreshold () const
 
virtual void SetConvergenceWindowSize (unsigned int _arg)
 
virtual unsigned int GetConvergenceWindowSize () const
 
- Public Member Functions inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >
virtual const RealTypeGetCurrentConvergenceValue ()
 
virtual const SizeValueTypeGetCurrentIteration ()
 
virtual SizeValueType GetCurrentLevel () const
 
virtual const RealTypeGetCurrentMetricValue ()
 
virtual const bool & GetIsConverged ()
 
virtual const
DecoratedOutputTransformType
GetOutput () const
 
virtual DataObjectPointer MakeOutput (DataObjectPointerArraySizeType)
 
void SetMetricSamplingPercentage (const RealType)
 
virtual void SetFixedImage (const FixedImageType *image)
 
virtual const FixedImageTypeGetFixedImage () const
 
virtual void SetFixedImage (SizeValueType, const FixedImageType *)
 
virtual const FixedImageTypeGetFixedImage (SizeValueType) const
 
virtual void SetMovingImage (const MovingImageType *image)
 
virtual const MovingImageTypeGetMovingImage () const
 
virtual void SetMovingImage (SizeValueType, const MovingImageType *)
 
virtual const MovingImageTypeGetMovingImage (SizeValueType) const
 
virtual void SetOptimizer (OptimizerType *_arg)
 
virtual OptimizerTypeGetOptimizer ()
 
virtual void SetMetric (MetricType *_arg)
 
virtual MetricTypeGetMetric ()
 
virtual void SetMetricSamplingStrategy (MetricSamplingStrategyType _arg)
 
virtual MetricSamplingStrategyType GetMetricSamplingStrategy () const
 
virtual void SetMetricSamplingPercentagePerLevel (MetricSamplingPercentageArrayType _arg)
 
virtual
MetricSamplingPercentageArrayType 
GetMetricSamplingPercentagePerLevel () const
 
virtual void SetFixedInitialTransform (InitialTransformType *_arg)
 
virtual const
InitialTransformType
GetFixedInitialTransform ()
 
virtual void SetMovingInitialTransform (InitialTransformType *_arg)
 
virtual const
InitialTransformType
GetMovingInitialTransform ()
 
void SetTransformParametersAdaptorsPerLevel (TransformParametersAdaptorsContainerType &)
 
const
TransformParametersAdaptorsContainerType
GetTransformParametersAdaptorsPerLevel () const
 
void SetNumberOfLevels (const SizeValueType)
 
virtual SizeValueType GetNumberOfLevels () const
 
virtual void SetShrinkFactorsPerLevel (ShrinkFactorsArrayType _arg)
 
virtual ShrinkFactorsArrayType GetShrinkFactorsPerLevel () const
 
virtual void SetSmoothingSigmasPerLevel (SmoothingSigmasArrayType _arg)
 
virtual SmoothingSigmasArrayType GetSmoothingSigmasPerLevel () const
 
virtual void SetSmoothingSigmasAreSpecifiedInPhysicalUnits (bool _arg)
 
virtual bool GetSmoothingSigmasAreSpecifiedInPhysicalUnits () const
 
virtual void SmoothingSigmasAreSpecifiedInPhysicalUnitsOn ()
 
virtual void SmoothingSigmasAreSpecifiedInPhysicalUnitsOff ()
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData ()
 
NameArray GetInputNames () const
 
MultiThreader * GetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
virtual const float & GetProgress ()
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual DataObjectPointer MakeOutput (const DataObjectIdentifierType &)
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void SetProgress (float _arg)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float amount)
 
DataObjectPointerArray GetInputs ()
 
DataObjectPointerArray GetOutputs ()
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag ()
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfThreads (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfThreads ()
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary (void)
 
const MetaDataDictionaryGetMetaDataDictionary (void) const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int)
 
virtual void UnRegister () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >
static Pointer New ()
 

Static Public Attributes

static const unsigned int ImageDimension = TFixedImage::ImageDimension
 
- Static Public Attributes inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >
static const unsigned int ImageDimension = TFixedImage::ImageDimension
 

Protected Member Functions

virtual void GenerateData ()
 
virtual void PrintSelf (std::ostream &os, Indent indent) const
 
virtual void StartOptimization ()
 
void ThreadedGenerateData (const RegionType &, ThreadIdType)
 
 TimeVaryingVelocityFieldImageRegistrationMethodv4 ()
 
virtual ~TimeVaryingVelocityFieldImageRegistrationMethodv4 ()
 
- Protected Member Functions inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >
 ImageRegistrationMethodv4 ()
 
virtual void InitializeRegistrationAtEachLevel (const SizeValueType)
 
virtual void SetMetricSamplePoints ()
 
virtual ~ImageRegistrationMethodv4 ()
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
virtual void AddOutput (DataObject *output)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateInputRequestedRegion ()
 
virtual void GenerateOutputInformation ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs ()
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
void SetRequiredInputNames (const NameArray &)
 
virtual void VerifyInputInformation ()
 
virtual void VerifyPreconditions ()
 
 ~ProcessObject ()
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
DataObjectGetInput (DataObjectPointerArraySizeType)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName () const
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName () const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs ()
 
virtual void PushBackInput (const DataObject *input)
 
virtual void PopBackInput ()
 
virtual void PushFrontInput (const DataObject *input)
 
virtual void PopFrontInput ()
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object ()
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Member Functions

void operator= (const Self &)
 
 TimeVaryingVelocityFieldImageRegistrationMethodv4 (const Self &)
 

Private Attributes

RealType m_ConvergenceThreshold
 
unsigned int m_ConvergenceWindowSize
 
RealType m_LearningRate
 
NumberOfIterationsArrayType m_NumberOfIterationsPerLevel
 

Additional Inherited Members

- Protected Types inherited from itk::LightObject
typedef int InternalReferenceCountType
 
- Protected Attributes inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >
CompositeTransformPointer m_CompositeTransform
 
RealType m_CurrentConvergenceValue
 
SizeValueType m_CurrentIteration
 
SizeValueType m_CurrentLevel
 
RealType m_CurrentMetricValue
 
InitialTransformPointer m_FixedInitialTransform
 
FixedImagesContainerType m_FixedSmoothImages
 
bool m_IsConverged
 
MetricPointer m_Metric
 
MetricSamplingPercentageArrayType m_MetricSamplingPercentagePerLevel
 
MetricSamplingStrategyType m_MetricSamplingStrategy
 
InitialTransformPointer m_MovingInitialTransform
 
MovingImagesContainerType m_MovingSmoothImages
 
SizeValueType m_NumberOfFixedImages
 
SizeValueType m_NumberOfLevels
 
SizeValueType m_NumberOfMovingImages
 
OptimizerPointer m_Optimizer
 
OutputTransformPointer m_OutputTransform
 
ShrinkFactorsArrayType m_ShrinkFactorsPerLevel
 
bool m_SmoothingSigmasAreSpecifiedInPhysicalUnits
 
SmoothingSigmasArrayType m_SmoothingSigmasPerLevel
 
TransformParametersAdaptorsContainerType m_TransformParametersAdaptorsPerLevel
 

Member Typedef Documentation

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef Superclass::CompositeTransformType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::CompositeTransformType
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef SmartPointer<const Self> itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::ConstPointer
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef DecoratedOutputTransformType::Pointer itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::DecoratedOutputTransformPointer
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef Superclass::DecoratedOutputTransformType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::DecoratedOutputTransformType
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef OutputTransformType::DerivativeType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::DerivativeType
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef DerivativeType::ValueType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::DerivativeValueType
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef DisplacementFieldType::Pointer itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::DisplacementFieldPointer
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef OutputTransformType::DisplacementFieldType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::DisplacementFieldType
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef TimeVaryingVelocityFieldType::PixelType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::DisplacementVectorType
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef FixedImageType::Pointer itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::FixedImagePointer
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef TFixedImage itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::FixedImageType

Input typedefs for the images and transforms.

Definition at line 110 of file itkTimeVaryingVelocityFieldImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef ImageMetricType::Pointer itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::ImageMetricPointer
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef Superclass::ImageMetricType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::ImageMetricType

Metric and transform typedefs

Definition at line 121 of file itkTimeVaryingVelocityFieldImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef ImageMetricType::MeasureType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::MeasureType
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef MovingImageType::Pointer itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::MovingImagePointer
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef TMovingImage itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::MovingImageType
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef Superclass::MultiMetricType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::MultiMetricType
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef Array<SizeValueType> itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::NumberOfIterationsArrayType
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef OutputTransformType::Pointer itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::OutputTransformPointer
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef TOutputTransform itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::OutputTransformType
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef SmartPointer<Self> itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::Pointer
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef OutputTransformType::ScalarType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::RealType
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef MovingImageType::RegionType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::RegionType
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef TimeVaryingVelocityFieldImageRegistrationMethodv4 itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::Self

Standard class typedefs.

Definition at line 98 of file itkTimeVaryingVelocityFieldImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef ImageRegistrationMethodv4<TFixedImage, TMovingImage, TOutputTransform> itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::Superclass
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef TimeVaryingVelocityFieldType::Pointer itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::TimeVaryingVelocityFieldPointer
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef OutputTransformType::TimeVaryingVelocityFieldType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::TimeVaryingVelocityFieldType
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
typedef ImageMetricType::VirtualImageType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::VirtualImageType

Constructor & Destructor Documentation

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::TimeVaryingVelocityFieldImageRegistrationMethodv4 ( )
protected
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
virtual itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::~TimeVaryingVelocityFieldImageRegistrationMethodv4 ( )
protectedvirtual
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::TimeVaryingVelocityFieldImageRegistrationMethodv4 ( const Self )
private

Member Function Documentation

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
virtual::itk::LightObject::Pointer itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
virtual void itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GenerateData ( )
protectedvirtual
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
virtual RealType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetConvergenceThreshold ( ) const
virtual

Set/Get the convergence threshold

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
virtual unsigned int itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetConvergenceWindowSize ( ) const
virtual

Set/Get the convergence window size

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
virtual RealType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetLearningRate ( ) const
virtual

Set/Get the learning rate.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
virtual const char* itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
virtual NumberOfIterationsArrayType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::GetNumberOfIterationsPerLevel ( ) const
virtual

Set/Get the number of iterations per level.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
static Pointer itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::New ( )
static

Method for creation through the object factory.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
void itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::operator= ( const Self )
private
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
virtual void itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
virtual void itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetConvergenceThreshold ( RealType  _arg)
virtual

Set/Get the convergence threshold

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
virtual void itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetConvergenceWindowSize ( unsigned int  _arg)
virtual

Set/Get the convergence window size

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
virtual void itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetLearningRate ( RealType  _arg)
virtual

Set/Get the learning rate.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
virtual void itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::SetNumberOfIterationsPerLevel ( NumberOfIterationsArrayType  _arg)
virtual

Set/Get the number of iterations per level.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
virtual void itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::StartOptimization ( )
protectedvirtual

Handle optimization internally

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
void itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::ThreadedGenerateData ( const RegionType ,
ThreadIdType   
)
protected

Multithreaded function which calculates the norm of the velocity field.

Member Data Documentation

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
const unsigned int itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::ImageDimension = TFixedImage::ImageDimension
static

ImageDimension constants

Definition at line 107 of file itkTimeVaryingVelocityFieldImageRegistrationMethodv4.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
RealType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_ConvergenceThreshold
private
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
unsigned int itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_ConvergenceWindowSize
private
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
RealType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_LearningRate
private
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = GaussianSmoothingOnUpdateTimeVaryingVelocityFieldTransform<double, TFixedImage::ImageDimension>>
NumberOfIterationsArrayType itk::TimeVaryingVelocityFieldImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform >::m_NumberOfIterationsPerLevel
private

The documentation for this class was generated from the following file: