#include <itkVoronoiSegmentationRGBImageFilter.h>

Inheritance diagram for itk::VoronoiSegmentationRGBImageFilter< TInputImage, TOutputImage >:

Collaboration diagram for itk::VoronoiSegmentationRGBImageFilter< TInputImage, TOutputImage >:

Detailed Description

template<class TInputImage, class TOutputImage>
class itk::VoronoiSegmentationRGBImageFilter< TInputImage, TOutputImage >

Segmentation of 2D RGB images using Voronoi Diagram. This is not a standard 3 channel image filter, it also investigates the HSV color space information. from RGBHSV, the user can specify or by giving a prior binary mask, the algorithm will decide which 3 channels out of the 6 channels will be used for homogeneity testing. the homogeneity testing requires all the three testing channels to have the similar mean and standard deviation value from the gold-standard in the sense that the difference will be under the tolerance value.

Input parameters are: (1) Image data, in the format: itkImage<itkVector<PixelType,3>, 2>. (2) Object statistics: mean and standard deviation (3) Tolerance level for the classifier. This level is usually set around the mean and standard deviation values.

These parameters can also be automatically set by providing a binary image prior.

Detailed information about this algorithm can be found in: " Semi-automated color segmentation of anatomical tissue," C. Imelinska, M. Downes, and W. Yuan Computerized Medical Imaging and Graphics, Vol.24, pp 173-180, 2000.

Definition at line 54 of file itkVoronoiSegmentationRGBImageFilter.h.

Public Types
typedef Superclass::BinaryObjectImage	BinaryObjectImage

typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::IndexList	IndexList

typedef Superclass::IndexType	IndexType

typedef Superclass::InputImagePointer	InputImagePointer

typedef Superclass::InputImageType	InputImageType

typedef Superclass::PixelType	PixelType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RegionType	RegionType

typedef Image< RGBHCVPixel >	RGBHCVImage

typedef Vector< float, 6 >	RGBHCVPixel

typedef VoronoiSegmentationRGBImageFilter	Self

typedef VoronoiSegmentationImageFilterBase < TInputImage, TOutputImage >	Superclass

Public Types inherited from itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage >
typedef Image< unsigned char, 2 >	BinaryObjectImage

typedef BinaryObjectImage::Pointer	BinaryObjectImagePointer

typedef VoronoiDiagram::CellAutoPointer	CellAutoPointer

typedef VoronoiDiagram::CellType	CellType

typedef SmartPointer< const Self >	ConstPointer

typedef VoronoiDiagram::VoronoiEdge	EdgeInfo

typedef VoronoiDiagram::VoronoiEdgeIterator	EdgeIterator

typedef std::vector< IndexType >	IndexList

typedef TInputImage::IndexType	IndexType

typedef TInputImage::ConstPointer	InputImageConstPointer

typedef TInputImage::Pointer	InputImagePointer

typedef TInputImage	InputImageType

typedef VoronoiDiagram::NeighborIdIterator	NeighborIdIterator

typedef TOutputImage	OutputImageType

typedef TOutputImage::PixelType	OutputPixelType

typedef TInputImage::PixelType	PixelType

typedef SmartPointer< Self >	Pointer

typedef CellType::PointIdIterator	PointIdIterator

typedef VoronoiDiagram::PointType	PointType

typedef std::deque< PointType >	PointTypeDeque

typedef std::vector< PointType >	PointTypeVector

typedef TInputImage::RegionType	RegionType

typedef VoronoiDiagram::SeedsIterator	SeedsIterator

typedef VoronoiDiagram::SeedsType	SeedsType

typedef VoronoiSegmentationImageFilterBase	Self

typedef TInputImage::SizeType	SizeType

typedef ImageToImageFilter < TInputImage, TOutputImage >	Superclass

typedef Image< unsigned char, 2 >	VDImage

typedef VDImage::Pointer	VDImagePointer

typedef VoronoiDiagram2D< double >	VoronoiDiagram

typedef VoronoiDiagram2DGenerator < double >	VoronoiDiagramGenerator

typedef VoronoiDiagram::Pointer	VoronoiPointer

Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const Self >	ConstPointer

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef InputImageType::PixelType	InputImagePixelType

typedef InputImageType::Pointer	InputImagePointer

typedef InputImageType::RegionType	InputImageRegionType

typedef TInputImage	InputImageType

typedef Superclass::OutputImagePixelType	OutputImagePixelType

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef SmartPointer< Self >	Pointer

typedef ImageToImageFilter	Self

typedef ImageSource< TOutputImage >	Superclass

Public Types inherited from itk::ImageSource< TOutputImage >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::DataObjectIdentifierType	DataObjectIdentifierType

typedef DataObject::Pointer	DataObjectPointer

typedef Superclass::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType

typedef OutputImageType::PixelType	OutputImagePixelType

typedef OutputImageType::Pointer	OutputImagePointer

typedef OutputImageType::RegionType	OutputImageRegionType

typedef TOutputImage	OutputImageType

typedef SmartPointer< Self >	Pointer

typedef ImageSource	Self

typedef ProcessObject	Superclass

Public Types inherited from itk::ProcessObject
typedef SmartPointer< const Self >	ConstPointer

typedef DataObject::DataObjectIdentifierType	DataObjectIdentifierType

typedef DataObject::Pointer	DataObjectPointer

typedef std::vector < DataObjectPointer >	DataObjectPointerArray

typedef DataObjectPointerArray::size_type	DataObjectPointerArraySizeType

typedef std::vector < DataObjectIdentifierType >	NameArray

typedef SmartPointer< Self >	Pointer

typedef ProcessObject	Self

typedef Object	Superclass

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual const char *	GetNameOfClass () const

void	GetTestMean (unsigned int x[3])

void	GetTestSTD (unsigned int x[3])

virtual void	SetInput (const InputImageType *input)

virtual void	SetInput (unsigned int, const InputImageType *image)

void	SetTestMean (unsigned int t1, unsigned int t2, unsigned int t3)

void	SetTestSTD (unsigned int t1, unsigned int t2, unsigned int t3)

void	TakeAPrior (const BinaryObjectImage *aprior)

	typedef (Concept::SameDimension< InputImageDimension, OutputImageDimension >) SameDimensionCheck

	typedef (Concept::Convertible< int, typename TOutputImage::PixelType >) IntConvertibleToOutputCheck


void	SetMeanPercentError (double x[6])

void	SetSTDPercentError (double x[6])

void	GetMeanPercentError (double x[6])

void	GetSTDPercentError (double x[6])

void	GetMean (double x[6])

void	GetSTD (double x[6])

void	SetMean (double x[6])

void	SetSTD (double x[6])

void	GetMeanTolerance (double x[6])

void	GetSTDTolerance (double x[6])


virtual void	SetMaxValueOfRGB (double _arg)

virtual double	GetMaxValueOfRGB () const

Public Member Functions inherited from itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage >
void	BeforeNextStep (void)

virtual ::itk::LightObject::Pointer	CreateAnother (void) const

void	DrawDiagram (VDImagePointer result, unsigned char incolor, unsigned char outcolor, unsigned char boundcolor)

virtual void	EnlargeOutputRequestedRegion (DataObject *output)

virtual void	GenerateInputRequestedRegion ()

virtual int	GetLastStepSeeds () const

virtual int	GetNumberOfSeedsToAdded () const

PointType	GetSeed (int SeedID)

VoronoiPointer	GetVoronoiDiagram (void)

virtual void	MakeSegmentBoundary (void)

virtual void	MakeSegmentObject (void)

void	RunSegment (void)

void	RunSegmentOneStep (void)

virtual void	TakeAPrior (const BinaryObjectImage *)

virtual void	SetNumberOfSeeds (int _arg)

virtual int	GetNumberOfSeeds () const

virtual void	SetMinRegion (int _arg)

virtual int	GetMinRegion () const

virtual void	SetSteps (int _arg)

virtual int	GetSteps () const

virtual void	SetUseBackgroundInAPrior (bool _arg)

virtual bool	GetUseBackgroundInAPrior () const

virtual void	SetOutputBoundary (bool _arg)

virtual bool	GetOutputBoundary () const

virtual void	SetInteractiveSegmentation (bool _arg)

virtual bool	GetInteractiveSegmentation () const

virtual void	InteractiveSegmentationOn ()

virtual void	InteractiveSegmentationOff ()

virtual void	SetMeanDeviation (double _arg)

virtual double	GetMeanDeviation () const

virtual void	SetSize (SizeType _arg)

virtual SizeType	GetSize () const

void	SetSeeds (int num, SeedsIterator begin)

void	SetSeeds (SeedsType &seeds)

Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual double	GetCoordinateTolerance ()

const InputImageType *	GetInput (void) const

const InputImageType *	GetInput (unsigned int idx) const

virtual void	PopBackInput ()

virtual void	PopFrontInput ()

virtual void	PushBackInput (const InputImageType *image)

virtual void	PushFrontInput (const InputImageType *image)

virtual void	SetCoordinateTolerance (double _arg)

virtual void	SetDirectionTolerance (double _arg)

virtual double	GetDirectionTolerance ()

Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageType *	GetOutput (unsigned int idx)

virtual void	GraftNthOutput (unsigned int idx, DataObject *output)

virtual void	GraftOutput (DataObject *output)

virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)

OutputImageType *	GetOutput (void)

const OutputImageType *	GetOutput (void) const

virtual ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx)

Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()

virtual void	AbortGenerateDataOn ()

virtual const bool &	GetAbortGenerateData ()

NameArray	GetInputNames () const

MultiThreader *	GetMultiThreader () const

DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const

DataObjectPointerArraySizeType	GetNumberOfInputs () const

DataObjectPointerArraySizeType	GetNumberOfOutputs () const

virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const

NameArray	GetOutputNames () const

virtual const float &	GetProgress ()

NameArray	GetRequiredInputNames () const

bool	HasInput (const DataObjectIdentifierType &key) const

bool	HasOutput (const DataObjectIdentifierType &key) const

virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)

virtual void	PrepareOutputs ()

virtual void	PropagateRequestedRegion (DataObject *output)

virtual void	ResetPipeline ()

virtual void	SetAbortGenerateData (bool _arg)

virtual void	SetProgress (float _arg)

virtual void	Update ()

virtual void	UpdateLargestPossibleRegion ()

virtual void	UpdateOutputData (DataObject *output)

virtual void	UpdateOutputInformation ()

void	UpdateProgress (float amount)

DataObjectPointerArray	GetInputs ()

DataObjectPointerArray	GetOutputs ()

DataObjectPointerArray	GetIndexedInputs ()

DataObjectPointerArray	GetIndexedOutputs ()

DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const

virtual void	SetReleaseDataFlag (bool flag)

virtual bool	GetReleaseDataFlag () const

void	ReleaseDataFlagOn ()

void	ReleaseDataFlagOff ()

virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)

virtual const bool &	GetReleaseDataBeforeUpdateFlag ()

virtual void	ReleaseDataBeforeUpdateFlagOn ()

virtual void	ReleaseDataBeforeUpdateFlagOff ()

virtual void	SetNumberOfThreads (ThreadIdType _arg)

virtual const ThreadIdType &	GetNumberOfThreads ()

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary (void)

const MetaDataDictionary &	GetMetaDataDictionary (void) const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

virtual void	Register () const

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetReferenceCount (int)

virtual void	UnRegister () const

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage >
static Pointer	New ()

Static Public Attributes

static const unsigned int	InputImageDimension = TInputImage::ImageDimension

static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Static Public Attributes inherited from itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage >
static const unsigned int	ImageDimension

Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int	InputImageDimension = TInputImage::ImageDimension

static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Protected Member Functions
void	PrintSelf (std::ostream &os, Indent indent) const

	VoronoiSegmentationRGBImageFilter ()

	~VoronoiSegmentationRGBImageFilter ()

Protected Member Functions inherited from itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage >
virtual void	ClassifyDiagram (void)

void	drawLine (PointType p1, PointType p2)

void	drawVDline (VDImagePointer result, PointType p1, PointType p2, unsigned char color)

void	FillPolygon (PointTypeDeque vertlist, OutputPixelType color=1)

virtual void	GenerateAddingSeeds (void)

void	GenerateData (void)

void	GetPixelIndexFromPolygon (PointTypeDeque VertList, IndexList *PixelPool)

virtual bool	TestHomogeneity (IndexList &)

	VoronoiSegmentationImageFilterBase ()

	~VoronoiSegmentationImageFilterBase ()

Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)

virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)

virtual void	VerifyInputInformation ()

void	PushBackInput (const DataObject *input)

void	PushFrontInput (const DataObject *input)

	ImageToImageFilter ()

	~ImageToImageFilter ()

Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void	AfterThreadedGenerateData ()

virtual void	AllocateOutputs ()

virtual void	BeforeThreadedGenerateData ()

	ImageSource ()

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)

virtual	~ImageSource ()

Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)

virtual void	AddOutput (DataObject *output)

bool	AddRequiredInputName (const DataObjectIdentifierType &)

virtual void	CacheInputReleaseDataFlags ()

virtual void	GenerateOutputInformation ()

virtual void	GenerateOutputRequestedRegion (DataObject *output)

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs ()

bool	IsIndexedInputName (const DataObjectIdentifierType &) const

bool	IsIndexedOutputName (const DataObjectIdentifierType &) const

bool	IsRequiredInputName (const DataObjectIdentifierType &) const

	itkLegacyMacro (virtual void RemoveInput(DataObject *input))

	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))

	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))

	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))

DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const

DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const

DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const

DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const

	ProcessObject ()

virtual void	PropagateResetPipeline ()

virtual void	ReleaseInputs ()

virtual void	RemoveInput (const DataObjectIdentifierType &key)

virtual void	RemoveInput (DataObjectPointerArraySizeType)

virtual void	RemoveOutput (const DataObjectIdentifierType &key)

virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)

bool	RemoveRequiredInputName (const DataObjectIdentifierType &)

virtual void	RestoreInputReleaseDataFlags ()

virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)

virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)

virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)

void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)

void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)

virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)

virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)

virtual void	SetPrimaryInput (DataObject *input)

virtual void	SetPrimaryOutput (DataObject *output)

void	SetRequiredInputNames (const NameArray &)

virtual void	VerifyPreconditions ()

	~ProcessObject ()

DataObject *	GetInput (const DataObjectIdentifierType &key)

const DataObject *	GetInput (const DataObjectIdentifierType &key) const

DataObject *	GetInput (DataObjectPointerArraySizeType)

const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const

DataObject *	GetPrimaryInput ()

const DataObject *	GetPrimaryInput () const

virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryInputName () const

DataObject *	GetOutput (const DataObjectIdentifierType &key)

const DataObject *	GetOutput (const DataObjectIdentifierType &key) const

virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryOutputName () const

DataObject *	GetOutput (DataObjectPointerArraySizeType idx)

const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const

DataObject *	GetPrimaryOutput ()

const DataObject *	GetPrimaryOutput () const

virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs ()

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Private Member Functions
void	operator= (const Self &)

virtual bool	TestHomogeneity (IndexList &Plist)

	VoronoiSegmentationRGBImageFilter (const Self &)

Private Attributes
double	m_MaxValueOfRGB

double	m_Mean [6]

double	m_MeanPercentError [6]

double	m_MeanTolerance [6]

double	m_STD [6]

double	m_STDPercentError [6]

double	m_STDTolerance [6]

unsigned int	m_TestMean [3]

unsigned int	m_TestSTD [3]

RGBHCVImage::Pointer	m_WorkingImage

Additional Inherited Members
Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension) >	InputToOutputRegionCopierType

typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) >	OutputToInputRegionCopierType

Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)

Protected Attributes inherited from itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage >
bool	m_InteractiveSegmentation

std::vector< unsigned char >	m_Label

int	m_LastStepSeeds

double	m_MeanDeviation

int	m_MinRegion

int	m_NumberOfBoundary

std::vector< int >	m_NumberOfPixels

int	m_NumberOfSeeds

int	m_NumberOfSeedsToAdded

bool	m_OutputBoundary

std::vector< PointType >	m_SeedsToAdded

SizeType	m_Size

int	m_Steps

bool	m_UseBackgroundInAPrior

VoronoiDiagramGenerator::Pointer	m_VDGenerator

VoronoiDiagram::Pointer	m_WorkingVD